Protein ID | Ophio5|2866 |
Gene name | |
Location | scaffold_23:24185..24729 |
Strand | - |
Gene length (bp) | 544 |
Transcript length (bp) | 465 |
Coding sequence length (bp) | 462 |
Protein length (aa) | 154 |
PFAM Domain ID | Short name | Long name | E-value | Start | End |
---|---|---|---|---|---|
PF01284 | MARVEL | Membrane-associating domain | 6.8E-15 | 9 | 135 |
GO Term | Description | Terminal node |
---|---|---|
GO:0016020 | membrane | Yes |
GO:0110165 | cellular anatomical entity | No |
GO:0005575 | cellular_component | No |
Localizations | Signals | Cytoplasm | Nucleus | Extracellular | Cell membrane | Mitochondrion | Plastid | Endoplasmic reticulum | Lysosome vacuole | Golgi apparatus | Peroxisome |
---|---|---|---|---|---|---|---|---|---|---|---|
Cell membrane|Lysosome/Vacuole | Signal peptide|Transmembrane domain | 0.0738 | 0.0983 | 0.2142 | 0.6003 | 0.0913 | 0.0045 | 0.2881 | 0.8345 | 0.4234 | 0.0072 |
Domain # | Start | End | Length |
---|---|---|---|
1 | 7 | 29 | 22 |
2 | 44 | 66 | 22 |
3 | 78 | 100 | 22 |
4 | 120 | 142 | 22 |
Orthofinder run ID | 4 |
Orthogroup | 4307 |
Change Orthofinder run |
Type of sequence | Sequence |
---|---|
Locus | Download genbank file of locus
Download genbank file of locus (reverse complement)
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
Protein | >Ophio5|2866 MSALDRIVSLILRAAEIAFAVIVAAVTGYYLHNNSGSAWSLARFIYTEVVAGISILLGLLWLLPFASTFSHWPAD IFISLLWWASFALLVNLVGTSCGAIFDWQNVSPTGDECGRVKADIAFAFLSAVVWLASALVGLFWTGRHERRSMR RSRV |
Coding | >Ophio5|2866 ATGTCGGCGCTCGACCGAATCGTCAGCCTCATCCTGCGGGCGGCCGAAATCGCTTTCGCCGTCATCGTCGCCGCC GTCACGGGCTATTATCTACACAACAACAGCGGTAGCGCCTGGAGCCTGGCGCGCTTCATATATACTGAGGTGGTG GCGGGTATATCCATCCTACTCGGACTACTCTGGCTGCTCCCCTTTGCCAGTACGTTCTCGCACTGGCCGGCAGAC ATCTTCATCAGTTTGCTATGGTGGGCGTCGTTTGCGCTGCTCGTCAACCTCGTCGGCACATCTTGTGGCGCAATC TTCGATTGGCAAAATGTTTCTCCTACGGGTGATGAGTGTGGCCGAGTCAAGGCCGATATCGCCTTCGCGTTCTTG TCGGCTGTAGTGTGGTTGGCTTCTGCCTTGGTTGGATTGTTCTGGACCGGGCGTCACGAGAGGCGGTCCATGCGG CGAAGCAGGGTT |
Transcript | >Ophio5|2866 ATGTCGGCGCTCGACCGAATCGTCAGCCTCATCCTGCGGGCGGCCGAAATCGCTTTCGCCGTCATCGTCGCCGCC GTCACGGGCTATTATCTACACAACAACAGCGGTAGCGCCTGGAGCCTGGCGCGCTTCATATATACTGAGGTGGTG GCGGGTATATCCATCCTACTCGGACTACTCTGGCTGCTCCCCTTTGCCAGTACGTTCTCGCACTGGCCGGCAGAC ATCTTCATCAGTTTGCTATGGTGGGCGTCGTTTGCGCTGCTCGTCAACCTCGTCGGCACATCTTGTGGCGCAATC TTCGATTGGCAAAATGTTTCTCCTACGGGTGATGAGTGTGGCCGAGTCAAGGCCGATATCGCCTTCGCGTTCTTG TCGGCTGTAGTGTGGTTGGCTTCTGCCTTGGTTGGATTGTTCTGGACCGGGCGTCACGAGAGGCGGTCCATGCGG CGAAGCAGGGTTTAG |
Gene | >Ophio5|2866 ATGTCGGCGCTCGACCGAATCGTCAGCCTCATCCTGCGGGCGGCCGAAATCGCTTTCGCCGTCATCGTCGCCGCC GTCACGGGCTATTATCTACACAACAACAGCGGTAGCGCCTGGAGCCTGGCGCGCTTCATATATACTGAGGTGGTG GCGGGTATATCCATCCTACTCGGACTACTCTGGCTGCTCCCCTTTGCCAGTACGTTCTCGCACTGGCCGGCAGAC ATCTTCATCAGTTTGCTATGGTGGGCGTCGTTTGCGCTGCTCGTCAACGTGAGTTTCCCACACATTTCCGTATTT TTTCGAAGTTTACTGACGCGAGGGGGGGGTTGCGAAAAAAAAAAAAAAAAAGCTCGTCGGCACATCTTGTGGCGC AATCTTCGATTGGCAAAATGTTTCTCCTACGGGTGATGAGTGTGGCCGAGTCAAGGCCGATATCGCCTTCGCGTT CTTGTCGGCTGTAGTGTGGTTGGCTTCTGCCTTGGTTGGATTGTTCTGGACCGGGCGTCACGAGAGGCGGTCCAT GCGGCGAAGCAGGGTTTAG |