Fungal Genomics

at Utrecht University

General Properties

Protein IDOphio5|2866
Gene name
Locationscaffold_23:24185..24729
Strand-
Gene length (bp)544
Transcript length (bp)465
Coding sequence length (bp)462
Protein length (aa) 154

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PFAM Domains

PFAM Domain ID Short name Long name E-value Start End
PF01284 MARVEL Membrane-associating domain 6.8E-15 9 135

Swissprot hits

(None)

GO

GO Term Description Terminal node
GO:0016020 membrane Yes
GO:0110165 cellular anatomical entity No
GO:0005575 cellular_component No

SignalP

[Help with interpreting these statistics]
SignalP signal predicted Location
(based on Ymax)
D score
(significance: > 0.45)
No 1 - 21 0.5

Transmembrane Domains

Domain # Start End Length
1 7 29 22
2 44 66 22
3 78 100 22
4 120 142 22

Transcription Factor Class

(None)

Expression data

Analysis 1: Expression analysis during behavioral modification. Published in De Bekker et al., 2017.

Click here for more information

Sequences

Type of sequenceSequence
Locus Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein >Ophio5|2866
MSALDRIVSLILRAAEIAFAVIVAAVTGYYLHNNSGSAWSLARFIYTEVVAGISILLGLLWLLPFASTFSHWPAD
IFISLLWWASFALLVNLVGTSCGAIFDWQNVSPTGDECGRVKADIAFAFLSAVVWLASALVGLFWTGRHERRSMR
RSRV
Coding >Ophio5|2866
ATGTCGGCGCTCGACCGAATCGTCAGCCTCATCCTGCGGGCGGCCGAAATCGCTTTCGCCGTCATCGTCGCCGCC
GTCACGGGCTATTATCTACACAACAACAGCGGTAGCGCCTGGAGCCTGGCGCGCTTCATATATACTGAGGTGGTG
GCGGGTATATCCATCCTACTCGGACTACTCTGGCTGCTCCCCTTTGCCAGTACGTTCTCGCACTGGCCGGCAGAC
ATCTTCATCAGTTTGCTATGGTGGGCGTCGTTTGCGCTGCTCGTCAACCTCGTCGGCACATCTTGTGGCGCAATC
TTCGATTGGCAAAATGTTTCTCCTACGGGTGATGAGTGTGGCCGAGTCAAGGCCGATATCGCCTTCGCGTTCTTG
TCGGCTGTAGTGTGGTTGGCTTCTGCCTTGGTTGGATTGTTCTGGACCGGGCGTCACGAGAGGCGGTCCATGCGG
CGAAGCAGGGTT
Transcript >Ophio5|2866
ATGTCGGCGCTCGACCGAATCGTCAGCCTCATCCTGCGGGCGGCCGAAATCGCTTTCGCCGTCATCGTCGCCGCC
GTCACGGGCTATTATCTACACAACAACAGCGGTAGCGCCTGGAGCCTGGCGCGCTTCATATATACTGAGGTGGTG
GCGGGTATATCCATCCTACTCGGACTACTCTGGCTGCTCCCCTTTGCCAGTACGTTCTCGCACTGGCCGGCAGAC
ATCTTCATCAGTTTGCTATGGTGGGCGTCGTTTGCGCTGCTCGTCAACCTCGTCGGCACATCTTGTGGCGCAATC
TTCGATTGGCAAAATGTTTCTCCTACGGGTGATGAGTGTGGCCGAGTCAAGGCCGATATCGCCTTCGCGTTCTTG
TCGGCTGTAGTGTGGTTGGCTTCTGCCTTGGTTGGATTGTTCTGGACCGGGCGTCACGAGAGGCGGTCCATGCGG
CGAAGCAGGGTTTAG
Gene >Ophio5|2866
ATGTCGGCGCTCGACCGAATCGTCAGCCTCATCCTGCGGGCGGCCGAAATCGCTTTCGCCGTCATCGTCGCCGCC
GTCACGGGCTATTATCTACACAACAACAGCGGTAGCGCCTGGAGCCTGGCGCGCTTCATATATACTGAGGTGGTG
GCGGGTATATCCATCCTACTCGGACTACTCTGGCTGCTCCCCTTTGCCAGTACGTTCTCGCACTGGCCGGCAGAC
ATCTTCATCAGTTTGCTATGGTGGGCGTCGTTTGCGCTGCTCGTCAACGTGAGTTTCCCACACATTTCCGTATTT
TTTCGAAGTTTACTGACGCGAGGGGGGGGTTGCGAAAAAAAAAAAAAAAAAGCTCGTCGGCACATCTTGTGGCGC
AATCTTCGATTGGCAAAATGTTTCTCCTACGGGTGATGAGTGTGGCCGAGTCAAGGCCGATATCGCCTTCGCGTT
CTTGTCGGCTGTAGTGTGGTTGGCTTCTGCCTTGGTTGGATTGTTCTGGACCGGGCGTCACGAGAGGCGGTCCAT
GCGGCGAAGCAGGGTTTAG

© 2022 - Robin Ohm - Utrecht University - The Netherlands

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