Fungal Genomics

General Properties

Protein ID	Ophio5|2846
Gene name
Location	scaffold_229:5347..6064
Strand	+
Gene length (bp)	717
Transcript length (bp)	630
Coding sequence length (bp)	627
Protein length (aa)	209

Overview

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PFAM Domains

PFAM Domain ID	Short name	Long name	E-value	Start	End
PF10447	EXOSC1	Exosome component EXOSC1/CSL4	3.3E-14	116	156
PF14382	ECR1_N	Exosome complex exonuclease RRP4 N-terminal region	4.4E-11	12	47

Swissprot hits

Swissprot ID	Swissprot Description	Start	End	E-value
sp|Q9DAA6|EXOS1_MOUSE	Exosome complex component CSL4 OS=Mus musculus GN=Exosc1 PE=1 SV=1	11	207	8.0E-44
sp|Q9Y3B2|EXOS1_HUMAN	Exosome complex component CSL4 OS=Homo sapiens GN=EXOSC1 PE=1 SV=1	11	207	6.0E-43
sp|O59821|CSL4_SCHPO	Exosome complex component csl4 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=csl4 PE=3 SV=2	40	208	9.0E-42
sp|P53859|CSL4_YEAST	Exosome complex component CSL4 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=CSL4 PE=1 SV=1	1	208	1.0E-27

GO

GO Term	Description	Terminal node
GO:0003723	RNA binding	Yes
GO:0000178	exosome (RNase complex)	Yes
GO:0003676	nucleic acid binding	No
GO:0097159	organic cyclic compound binding	No
GO:0005488	binding	No
GO:0032991	protein-containing complex	No
GO:0005575	cellular_component	No
GO:1905354	exoribonuclease complex	No
GO:0003674	molecular_function	No
GO:1901363	heterocyclic compound binding	No
GO:1902494	catalytic complex	No

Deeploc

[Help with interpreting the results of Deeploc 2.0]

Localizations	Signals	Cytoplasm	Nucleus	Extracellular	Cell membrane	Mitochondrion	Plastid	Endoplasmic reticulum	Lysosome vacuole	Golgi apparatus	Peroxisome
Cytoplasm|Nucleus	Peroxisomal targeting signal	0.7547	0.5686	0.1313	0.0128	0.2813	0.0138	0.0978	0.0318	0.0179	0.0373

SignalP

(None)

Transmembrane Domains

(None)

Transcription Factor Class

(None)

CAZymes

(None)

Secondary Metabolism

(None)

Expression data

Analysis 1: Expression analysis during behavioral modification. Published in De Bekker et al., 2017.

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Orthologs

Orthofinder run ID	4
Orthogroup	274
Change Orthofinder run	4: Insect Pathogens

Species	Protein ID
Ophiocordyceps australis 1348a (Ghana)	OphauG2|7591
Ophiocordyceps australis 1348a (Ghana)	OphauG2|7592
Ophiocordyceps australis map64 (Brazil)	OphauB2|3646
Ophiocordyceps australis map64 (Brazil)	OphauB2|3647
Ophiocordyceps camponoti-floridani	Ophcf2|05045
Ophiocordyceps camponoti-floridani	Ophcf2|05046
Ophiocordyceps camponoti-rufipedis	Ophun1|1084
Ophiocordyceps kimflemingae	Ophio5|2846 (this protein)
Ophiocordyceps kimflemingae	Ophio5|2847
Ophiocordyceps subramaniannii	Hirsu2|2634
Ophiocordyceps subramaniannii	Hirsu2|3688

Sequences

Type of sequence	Sequence
Locus	Download genbank file of locus Download genbank file of locus (reverse complement) The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein	>Ophio5|2846 MAAHDQVPSSALPGDRLGPLSKYAPGPGTHVYDGHVVSSLLGRVAVTPATRSAGPTKRLNKITGSVDAEPATISV SRHGRQREVLPDVSSEVLARVVRLMPKQAIVVIQQVGDTVLQTEWQGVIRVQDVRATEKDKVKMHEAFKPGDIVR ARVISLGDQANYYLSTASNELGVIMATSEAGNDMVPISWKEYQDPETGLTEPRKVAKPN
Coding	>Ophio5|2846 ATGGCCGCCCACGATCAAGTCCCCTCGTCCGCCCTCCCCGGTGACCGCCTGGGCCCTCTCTCCAAGTACGCTCCA GGCCCAGGCACCCACGTCTACGACGGTCATGTCGTGTCGTCGCTACTGGGCCGCGTCGCCGTGACGCCAGCGACA CGCTCAGCCGGTCCCACGAAGCGCCTCAACAAAATTACCGGCTCTGTCGACGCCGAGCCGGCCACCATCTCCGTG TCGAGACATGGCCGGCAGCGCGAGGTGCTACCGGATGTGTCGAGCGAGGTGCTGGCGCGCGTGGTGCGCCTTATG CCCAAGCAGGCCATCGTCGTCATCCAGCAGGTTGGCGATACGGTGCTGCAGACGGAATGGCAGGGCGTCATTCGC GTGCAGGACGTGCGGGCTACGGAGAAAGACAAGGTTAAGATGCACGAGGCCTTTAAGCCGGGCGACATTGTCCGC GCACGGGTGATTTCCCTCGGCGATCAGGCCAACTATTACCTGTCGACGGCGTCCAACGAATTGGGAGTCATCATG GCCACCAGCGAGGCTGGCAACGACATGGTGCCCATCAGCTGGAAGGAATACCAGGACCCCGAGACGGGCCTGACG GAGCCGAGAAAAGTGGCCAAGCCGAAT
Transcript	>Ophio5|2846 ATGGCCGCCCACGATCAAGTCCCCTCGTCCGCCCTCCCCGGTGACCGCCTGGGCCCTCTCTCCAAGTACGCTCCA GGCCCAGGCACCCACGTCTACGACGGTCATGTCGTGTCGTCGCTACTGGGCCGCGTCGCCGTGACGCCAGCGACA CGCTCAGCCGGTCCCACGAAGCGCCTCAACAAAATTACCGGCTCTGTCGACGCCGAGCCGGCCACCATCTCCGTG TCGAGACATGGCCGGCAGCGCGAGGTGCTACCGGATGTGTCGAGCGAGGTGCTGGCGCGCGTGGTGCGCCTTATG CCCAAGCAGGCCATCGTCGTCATCCAGCAGGTTGGCGATACGGTGCTGCAGACGGAATGGCAGGGCGTCATTCGC GTGCAGGACGTGCGGGCTACGGAGAAAGACAAGGTTAAGATGCACGAGGCCTTTAAGCCGGGCGACATTGTCCGC GCACGGGTGATTTCCCTCGGCGATCAGGCCAACTATTACCTGTCGACGGCGTCCAACGAATTGGGAGTCATCATG GCCACCAGCGAGGCTGGCAACGACATGGTGCCCATCAGCTGGAAGGAATACCAGGACCCCGAGACGGGCCTGACG GAGCCGAGAAAAGTGGCCAAGCCGAATTAG
Gene	>Ophio5|2846 ATGGCCGCCCACGATCAAGTCCCCTCGTCCGCCCTCCCCGGTGACCGCCTGGGCCCTCTCTCCAAGTACGCTCCA GGCCCAGGCACCCACGTCTACGACGGTCATGTCGTGTCGTCGCTACTGGGCCGCGTCGCCGTGACGCCAGCGACA CGCTCAGCCGGTCCCACGAAGCGCCTCAACAAAATTACCGGCTCTGTCGACGCCGAGCCGGCCACCATCTCCGTG TCGAGACATGGCCGGCAGCGCGAGGTGCTACCGGATGTGTCGAGCGAGGTGCTGGCGCGCGTGGTGCGCCTTATG CCCAAGCAGGCCATCGTCGTCATCCAGCAGGTTGGCGATACGGTGCTGCAGACGGAATGGCAGGGCGTCATTCGC GTGCAGGACGTGCGGGCTACGGAGAAAGACAAGGTTAAGATGCACGAGGCCTTTAAGCCGGGCGACATTGTCCGC GCACGGGTGGTTAGTCTTCTTTTTTCCTCCTTTCGCCTCTCTTTGTACTTTTTTTTTTTCGTCCTTTACCCTCCT AACGTGAGACGCGCCGCGCAGATTTCCCTCGGCGATCAGGCCAACTATTACCTGTCGACGGCGTCCAACGAATTG GGAGTCATCATGGCCACCAGCGAGGCTGGCAACGACATGGTGCCCATCAGCTGGAAGGAATACCAGGACCCCGAG ACGGGCCTGACGGAGCCGAGAAAAGTGGCCAAGCCGAATTAG