© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Ophio5|2842 |
| Gene name | |
| Location | scaffold_228:20403..21238 |
| Strand | + |
| Gene length (bp) | 835 |
| Transcript length (bp) | 780 |
| Coding sequence length (bp) | 777 |
| Protein length (aa) | 259 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF08551 | DUF1751 | Eukaryotic integral membrane protein (DUF1751) | 7.1E-05 | 45 | 110 |
| PF01694 | Rhomboid | Rhomboid family | 6.3E-05 | 44 | 192 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|Q9UTK7|DSC2_SCHPO | DSC E3 ubiquitin ligase complex subunit 2 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=dsc2 PE=1 SV=1 | 4 | 206 | 3.0E-26 |
| sp|Q8RXQ2|RBL18_ARATH | Rhomboid-like protein 18 OS=Arabidopsis thaliana GN=RBL18 PE=2 SV=1 | 3 | 192 | 3.0E-12 |
| sp|Q08232|YO073_YEAST | Uncharacterized membrane protein YOL073C OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=YOL073C PE=1 SV=1 | 4 | 206 | 3.0E-12 |
| sp|Q9LET3|RBL20_ARATH | Rhomboid-like protein 20 OS=Arabidopsis thaliana GN=RBL20 PE=2 SV=1 | 3 | 196 | 4.0E-12 |
| sp|Q8R1K1|UBAC2_MOUSE | Ubiquitin-associated domain-containing protein 2 OS=Mus musculus GN=Ubac2 PE=1 SV=1 | 33 | 169 | 1.0E-10 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|Q9UTK7|DSC2_SCHPO | DSC E3 ubiquitin ligase complex subunit 2 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=dsc2 PE=1 SV=1 | 4 | 206 | 3.0E-26 |
| sp|Q8RXQ2|RBL18_ARATH | Rhomboid-like protein 18 OS=Arabidopsis thaliana GN=RBL18 PE=2 SV=1 | 3 | 192 | 3.0E-12 |
| sp|Q08232|YO073_YEAST | Uncharacterized membrane protein YOL073C OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=YOL073C PE=1 SV=1 | 4 | 206 | 3.0E-12 |
| sp|Q9LET3|RBL20_ARATH | Rhomboid-like protein 20 OS=Arabidopsis thaliana GN=RBL20 PE=2 SV=1 | 3 | 196 | 4.0E-12 |
| sp|Q8R1K1|UBAC2_MOUSE | Ubiquitin-associated domain-containing protein 2 OS=Mus musculus GN=Ubac2 PE=1 SV=1 | 33 | 169 | 1.0E-10 |
| sp|Q8NBM4|UBAC2_HUMAN | Ubiquitin-associated domain-containing protein 2 OS=Homo sapiens GN=UBAC2 PE=1 SV=1 | 45 | 169 | 2.0E-10 |
| sp|Q4R910|UBAC2_MACFA | Ubiquitin-associated domain-containing protein 2 OS=Macaca fascicularis GN=UBAC2 PE=2 SV=1 | 45 | 169 | 2.0E-10 |
| sp|Q5ZJQ8|UBAC2_CHICK | Ubiquitin-associated domain-containing protein 2 OS=Gallus gallus GN=UBAC2 PE=2 SV=1 | 45 | 169 | 4.0E-10 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0006890 | retrograde vesicle-mediated transport, Golgi to endoplasmic reticulum | Yes |
| GO:0016021 | integral component of membrane | Yes |
| GO:0004252 | serine-type endopeptidase activity | Yes |
| GO:0008233 | peptidase activity | No |
| GO:0017171 | serine hydrolase activity | No |
| GO:0008150 | biological_process | No |
| GO:0008236 | serine-type peptidase activity | No |
| GO:0031224 | intrinsic component of membrane | No |
| GO:0051234 | establishment of localization | No |
| GO:0006810 | transport | No |
| GO:0051179 | localization | No |
| GO:0003674 | molecular_function | No |
| GO:0004175 | endopeptidase activity | No |
| GO:0140096 | catalytic activity, acting on a protein | No |
| GO:0110165 | cellular anatomical entity | No |
| GO:0016787 | hydrolase activity | No |
| GO:0005575 | cellular_component | No |
| GO:0016192 | vesicle-mediated transport | No |
| GO:0048193 | Golgi vesicle transport | No |
| GO:0003824 | catalytic activity | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 20 | 0.5 |
| Domain # | Start | End | Length |
|---|---|---|---|
| 1 | 13 | 35 | 22 |
| 2 | 50 | 72 | 22 |
| 3 | 84 | 106 | 22 |
| 4 | 111 | 133 | 22 |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Ophio5|2842 MTFTNAPVTRLAVLGLVSGSIVTSMFDVKHYFYILIDTHLWRYRQVWRLLAYQLCYVNSAEVLFAAMSVYNLRVV ERMWGSRKYASFLFVSYLLTALIGPLVMVVLRWLSAGLFNYMPAGPTPIIFAVLAQFYAMVPHTYKYRVATDNDT LSGLTLSDKSYQYVVAFHLSLLQWPGSVAGAAVGWLLGHAWRGGVLPASLVTWRLPGWVMGLSAQGRSAEFEGLR RRLEGENRATAVSTAVQDQPGGSQVDRRRTGGGP |
| Coding | >Ophio5|2842 ATGACCTTTACCAACGCGCCCGTGACCCGGCTGGCGGTCCTGGGTCTCGTGTCCGGCTCCATCGTGACCAGCATG TTCGACGTGAAGCATTACTTCTACATCCTCATCGACACCCACCTCTGGCGCTATCGTCAGGTATGGCGACTCCTG GCATACCAGCTCTGCTACGTCAACTCGGCCGAAGTGCTGTTCGCCGCCATGTCCGTCTATAACCTCCGCGTCGTC GAGCGCATGTGGGGTTCGAGAAAATACGCGTCTTTCCTCTTCGTCTCTTACCTGCTGACGGCCTTGATCGGCCCA CTTGTCATGGTGGTGCTGCGATGGCTCTCGGCCGGCCTGTTCAACTACATGCCCGCCGGTCCGACACCCATCATC TTCGCCGTTCTCGCCCAGTTTTATGCCATGGTTCCGCACACGTACAAGTACCGCGTGGCAACGGACAACGACACT TTGTCCGGACTGACCTTGTCGGACAAGTCGTACCAATACGTCGTCGCCTTTCATCTGTCGCTGCTGCAGTGGCCC GGGTCCGTCGCCGGCGCTGCCGTGGGCTGGCTCCTCGGTCACGCGTGGCGCGGCGGAGTCCTGCCCGCGTCGCTC GTGACGTGGCGGCTGCCGGGCTGGGTGATGGGACTGAGCGCGCAGGGGCGCAGCGCCGAGTTCGAGGGTCTGCGT CGCCGGCTCGAGGGCGAGAACCGGGCGACGGCCGTCTCTACAGCTGTGCAGGACCAGCCAGGAGGGAGCCAGGTC GACAGGAGGCGGACAGGAGGCGGACCA |
| Transcript | >Ophio5|2842 ATGACCTTTACCAACGCGCCCGTGACCCGGCTGGCGGTCCTGGGTCTCGTGTCCGGCTCCATCGTGACCAGCATG TTCGACGTGAAGCATTACTTCTACATCCTCATCGACACCCACCTCTGGCGCTATCGTCAGGTATGGCGACTCCTG GCATACCAGCTCTGCTACGTCAACTCGGCCGAAGTGCTGTTCGCCGCCATGTCCGTCTATAACCTCCGCGTCGTC GAGCGCATGTGGGGTTCGAGAAAATACGCGTCTTTCCTCTTCGTCTCTTACCTGCTGACGGCCTTGATCGGCCCA CTTGTCATGGTGGTGCTGCGATGGCTCTCGGCCGGCCTGTTCAACTACATGCCCGCCGGTCCGACACCCATCATC TTCGCCGTTCTCGCCCAGTTTTATGCCATGGTTCCGCACACGTACAAGTACCGCGTGGCAACGGACAACGACACT TTGTCCGGACTGACCTTGTCGGACAAGTCGTACCAATACGTCGTCGCCTTTCATCTGTCGCTGCTGCAGTGGCCC GGGTCCGTCGCCGGCGCTGCCGTGGGCTGGCTCCTCGGTCACGCGTGGCGCGGCGGAGTCCTGCCCGCGTCGCTC GTGACGTGGCGGCTGCCGGGCTGGGTGATGGGACTGAGCGCGCAGGGGCGCAGCGCCGAGTTCGAGGGTCTGCGT CGCCGGCTCGAGGGCGAGAACCGGGCGACGGCCGTCTCTACAGCTGTGCAGGACCAGCCAGGAGGGAGCCAGGTC GACAGGAGGCGGACAGGAGGCGGACCATGA |
| Gene | >Ophio5|2842 ATGACCTTTACCAACGCGCCCGTGACCCGGCTGGCGGTCCTGGGTCTCGTGTCCGGCTCCATCGTGACCAGCATG TTCGACGTGAAGCATTACTTCTACATCCTCATCGACACCCACCTCTGGCGCTATCGTCAGGTATGGCGACTCCTG GCATACCAGCTCTGCTACGTCAACTCGGCCGAAGTGCTGTTCGCCGCCATGTCCGTCTATAACCTCCGCGTCGTC GAGCGCATGTGGGGTTCGAGAAAATACGCGGTGAGCTGGCATGTGAGCGCCAGGTGGCACGCGCACCAGACTGAC GATTGCTCAGTCTTTCCTCTTCGTCTCTTACCTGCTGACGGCCTTGATCGGCCCACTTGTCATGGTGGTGCTGCG ATGGCTCTCGGCCGGCCTGTTCAACTACATGCCCGCCGGTCCGACACCCATCATCTTCGCCGTTCTCGCCCAGTT TTATGCCATGGTTCCGCACACGTACAAGTACCGCGTGGCAACGGACAACGACACTTTGTCCGGACTGACCTTGTC GGACAAGTCGTACCAATACGTCGTCGCCTTTCATCTGTCGCTGCTGCAGTGGCCCGGGTCCGTCGCCGGCGCTGC CGTGGGCTGGCTCCTCGGTCACGCGTGGCGCGGCGGAGTCCTGCCCGCGTCGCTCGTGACGTGGCGGCTGCCGGG CTGGGTGATGGGACTGAGCGCGCAGGGGCGCAGCGCCGAGTTCGAGGGTCTGCGTCGCCGGCTCGAGGGCGAGAA CCGGGCGACGGCCGTCTCTACAGCTGTGCAGGACCAGCCAGGAGGGAGCCAGGTCGACAGGAGGCGGACAGGAGG CGGACCATGA |