© 2023 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Ophio5|2834 |
| Gene name | |
| Location | scaffold_228:4153..5098 |
| Strand | - |
| Gene length (bp) | 945 |
| Transcript length (bp) | 828 |
| Coding sequence length (bp) | 825 |
| Protein length (aa) | 275 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF00887 | ACBP | Acyl CoA binding protein | 1.5E-23 | 6 | 94 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|C4R8D7|ATG37_PICPG | Autophagy-related protein 37 OS=Komagataella pastoris (strain GS115 / ATCC 20864) GN=PAS_chr4_0602 PE=1 SV=1 | 1 | 149 | 8.0E-32 |
| sp|Q20507|ACBP3_CAEEL | Acyl-CoA-binding protein homolog 3 OS=Caenorhabditis elegans GN=acbp-3 PE=3 SV=2 | 4 | 107 | 2.0E-09 |
| sp|P0C8L7|ACBP_HYPDU | Putative acyl-CoA-binding protein OS=Hypsibius dujardini PE=3 SV=1 | 4 | 100 | 5.0E-08 |
| sp|Q3SZF0|ACBD7_BOVIN | Acyl-CoA-binding domain-containing protein 7 OS=Bos taurus GN=ACBD7 PE=3 SV=1 | 25 | 102 | 7.0E-06 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0000062 | fatty-acyl-CoA binding | Yes |
| GO:1901265 | nucleoside phosphate binding | No |
| GO:0017076 | purine nucleotide binding | No |
| GO:0120227 | acyl-CoA binding | No |
| GO:1901363 | heterocyclic compound binding | No |
| GO:1901567 | fatty acid derivative binding | No |
| GO:0003674 | molecular_function | No |
| GO:0032553 | ribonucleotide binding | No |
| GO:0032555 | purine ribonucleotide binding | No |
| GO:0000166 | nucleotide binding | No |
| GO:0030554 | adenyl nucleotide binding | No |
| GO:0097367 | carbohydrate derivative binding | No |
| GO:0005488 | binding | No |
| GO:0097159 | organic cyclic compound binding | No |
| GO:0036094 | small molecule binding | No |
| GO:0032559 | adenyl ribonucleotide binding | No |
| GO:0033218 | amide binding | No |
| GO:1901681 | sulfur compound binding | No |
| Localizations | Signals | Cytoplasm | Nucleus | Extracellular | Cell membrane | Mitochondrion | Plastid | Endoplasmic reticulum | Lysosome vacuole | Golgi apparatus | Peroxisome |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Endoplasmic reticulum | Peroxisomal targeting signal | 0.1568 | 0.3169 | 0.1067 | 0.1108 | 0.4448 | 0.104 | 0.7308 | 0.1594 | 0.2267 | 0.6919 |
| Domain # | Start | End | Length |
|---|---|---|---|
| 1 | 222 | 244 | 22 |
| Orthofinder run ID | 4 |
| Orthogroup | 3038 |
| Change Orthofinder run |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
Download genbank file of locus (reverse complement)
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Ophio5|2834 MADSVDRVFVHALNTVKKIPKTGASRPPPSDRLRLYGLYKQAMEGDVDGVMEQPAPTPALTAEELQRERDKWHAW NSQKGLGRTEAKRRYVEALIQTMHRYATTTDATELVAELEFVWNQIRHNSSGSSDYSPPTAAARLQQDGPMNVLT PMSEQGEAEMRSHRQMELHGSGAAEQSGRWQRTIDRAVTNLSAEVAALREQIATGREWKSKKERSFSAWLRWMAW KVIKHIVADCVVVALVLLWMRRRRDTRLEDLVRAVLKLAREYARKVLPSR |
| Coding | >Ophio5|2834 ATGGCCGACTCCGTGGATCGAGTCTTCGTTCACGCTCTCAACACCGTCAAGAAGATACCCAAGACGGGCGCGTCG CGGCCGCCGCCGTCAGACCGCCTGCGCCTCTATGGGCTCTACAAACAGGCCATGGAGGGCGACGTCGACGGTGTC ATGGAGCAGCCTGCGCCGACGCCCGCGCTGACGGCTGAAGAGTTGCAGCGGGAGCGAGACAAGTGGCATGCCTGG AACTCCCAGAAGGGTCTTGGCCGTACCGAGGCCAAGCGGAGATATGTCGAAGCCCTCATTCAGACCATGCACCGC TACGCCACCACTACGGATGCTACCGAGCTCGTGGCTGAGCTCGAGTTCGTCTGGAACCAGATCAGGCACAACTCG TCCGGCTCGTCCGACTACTCACCGCCGACGGCAGCCGCGAGACTCCAGCAGGACGGTCCGATGAACGTGCTGACG CCCATGAGCGAGCAGGGCGAGGCCGAGATGCGGTCACATCGGCAGATGGAGCTCCACGGCTCCGGGGCGGCCGAG CAGAGCGGTCGCTGGCAAAGAACCATAGACCGCGCCGTCACCAACCTGTCCGCCGAGGTAGCGGCGCTGCGGGAG CAGATCGCGACAGGGAGGGAGTGGAAGTCGAAAAAGGAGCGCAGCTTCTCGGCTTGGCTCAGGTGGATGGCGTGG AAAGTCATCAAGCACATCGTCGCTGACTGCGTCGTCGTCGCCCTCGTTCTGCTTTGGATGCGGAGACGAAGAGAT ACGCGGCTGGAGGACCTCGTGAGGGCGGTGCTCAAGCTGGCCCGGGAATATGCTCGAAAGGTTCTCCCGTCCAGA |
| Transcript | >Ophio5|2834 ATGGCCGACTCCGTGGATCGAGTCTTCGTTCACGCTCTCAACACCGTCAAGAAGATACCCAAGACGGGCGCGTCG CGGCCGCCGCCGTCAGACCGCCTGCGCCTCTATGGGCTCTACAAACAGGCCATGGAGGGCGACGTCGACGGTGTC ATGGAGCAGCCTGCGCCGACGCCCGCGCTGACGGCTGAAGAGTTGCAGCGGGAGCGAGACAAGTGGCATGCCTGG AACTCCCAGAAGGGTCTTGGCCGTACCGAGGCCAAGCGGAGATATGTCGAAGCCCTCATTCAGACCATGCACCGC TACGCCACCACTACGGATGCTACCGAGCTCGTGGCTGAGCTCGAGTTCGTCTGGAACCAGATCAGGCACAACTCG TCCGGCTCGTCCGACTACTCACCGCCGACGGCAGCCGCGAGACTCCAGCAGGACGGTCCGATGAACGTGCTGACG CCCATGAGCGAGCAGGGCGAGGCCGAGATGCGGTCACATCGGCAGATGGAGCTCCACGGCTCCGGGGCGGCCGAG CAGAGCGGTCGCTGGCAAAGAACCATAGACCGCGCCGTCACCAACCTGTCCGCCGAGGTAGCGGCGCTGCGGGAG CAGATCGCGACAGGGAGGGAGTGGAAGTCGAAAAAGGAGCGCAGCTTCTCGGCTTGGCTCAGGTGGATGGCGTGG AAAGTCATCAAGCACATCGTCGCTGACTGCGTCGTCGTCGCCCTCGTTCTGCTTTGGATGCGGAGACGAAGAGAT ACGCGGCTGGAGGACCTCGTGAGGGCGGTGCTCAAGCTGGCCCGGGAATATGCTCGAAAGGTTCTCCCGTCCAGA TGA |
| Gene | >Ophio5|2834 ATGGCCGACTCCGTGGGTGCGTCGCCGGCTGGCCGGCCTGTGTGTCGAGTTGACTTTTGCGCTGACGGGTGCAGA TCGAGTCTTCGTTCACGCTCTCAACACCGTCAAGAAGATACCCAAGACGGGCGCGTCGCGGCCGCCGCCGTCAGA CCGCCTGCGCCTCTATGGGCTCTACAAACAGGCCATGGAGGGCGACGTCGACGGTGTCATGGAGCAGCCTGCGCC GACGCCCGCGCTGACGGCTGAAGAGTTGCAGCGGGAGCGAGACAAGTGGCATGCCTGGAACTCCCAGAAGGGTCT TGGCCGTACCGAGGCCAAGCGGAGATATGTCGAAGCCCTCATTCAGACCATGCACCGCTACGCCACCACTACGTC GGTCACAAAGTCCAACCCCTTACCACCATCCCGTTTTGCTGACGCGAGGCGTCCAGGGATGCTACCGAGCTCGTG GCTGAGCTCGAGTTCGTCTGGAACCAGATCAGGCACAACTCGTCCGGCTCGTCCGACTACTCACCGCCGACGGCA GCCGCGAGACTCCAGCAGGACGGTCCGATGAACGTGCTGACGCCCATGAGCGAGCAGGGCGAGGCCGAGATGCGG TCACATCGGCAGATGGAGCTCCACGGCTCCGGGGCGGCCGAGCAGAGCGGTCGCTGGCAAAGAACCATAGACCGC GCCGTCACCAACCTGTCCGCCGAGGTAGCGGCGCTGCGGGAGCAGATCGCGACAGGGAGGGAGTGGAAGTCGAAA AAGGAGCGCAGCTTCTCGGCTTGGCTCAGGTGGATGGCGTGGAAAGTCATCAAGCACATCGTCGCTGACTGCGTC GTCGTCGCCCTCGTTCTGCTTTGGATGCGGAGACGAAGAGATACGCGGCTGGAGGACCTCGTGAGGGCGGTGCTC AAGCTGGCCCGGGAATATGCTCGAAAGGTTCTCCCGTCCAGATGA |