Protein ID | Ophio5|2830 |
Gene name | |
Location | scaffold_227:24960..26796 |
Strand | - |
Gene length (bp) | 1836 |
Transcript length (bp) | 1836 |
Coding sequence length (bp) | 1833 |
Protein length (aa) | 611 |
PFAM Domain ID | Short name | Long name | E-value | Start | End |
---|---|---|---|---|---|
PF03068 | PAD | Protein-arginine deiminase (PAD) | 8.9E-121 | 198 | 605 |
Swissprot ID | Swissprot Description | Start | End | E-value |
---|---|---|---|---|
sp|Q9ULW8|PADI3_HUMAN | Protein-arginine deiminase type-3 OS=Homo sapiens GN=PADI3 PE=1 SV=2 | 199 | 605 | 3.0E-49 |
sp|P70708|PADI3_RAT | Protein-arginine deiminase type-3 OS=Rattus norvegicus GN=Padi3 PE=2 SV=1 | 199 | 605 | 8.0E-48 |
sp|Q9Z184|PADI3_MOUSE | Protein-arginine deiminase type-3 OS=Mus musculus GN=Padi3 PE=1 SV=2 | 199 | 605 | 3.0E-47 |
sp|O02849|PADI3_SHEEP | Protein-arginine deiminase type-3 OS=Ovis aries GN=PADI3 PE=1 SV=1 | 28 | 606 | 7.0E-47 |
sp|Q9UM07|PADI4_HUMAN | Protein-arginine deiminase type-4 OS=Homo sapiens GN=PADI4 PE=1 SV=2 | 200 | 605 | 3.0E-45 |
Swissprot ID | Swissprot Description | Start | End | E-value |
---|---|---|---|---|
sp|Q9ULW8|PADI3_HUMAN | Protein-arginine deiminase type-3 OS=Homo sapiens GN=PADI3 PE=1 SV=2 | 199 | 605 | 3.0E-49 |
sp|P70708|PADI3_RAT | Protein-arginine deiminase type-3 OS=Rattus norvegicus GN=Padi3 PE=2 SV=1 | 199 | 605 | 8.0E-48 |
sp|Q9Z184|PADI3_MOUSE | Protein-arginine deiminase type-3 OS=Mus musculus GN=Padi3 PE=1 SV=2 | 199 | 605 | 3.0E-47 |
sp|O02849|PADI3_SHEEP | Protein-arginine deiminase type-3 OS=Ovis aries GN=PADI3 PE=1 SV=1 | 28 | 606 | 7.0E-47 |
sp|Q9UM07|PADI4_HUMAN | Protein-arginine deiminase type-4 OS=Homo sapiens GN=PADI4 PE=1 SV=2 | 200 | 605 | 3.0E-45 |
sp|Q9ULC6|PADI1_HUMAN | Protein-arginine deiminase type-1 OS=Homo sapiens GN=PADI1 PE=2 SV=2 | 199 | 605 | 8.0E-44 |
sp|O88807|PADI4_RAT | Protein-arginine deiminase type-4 OS=Rattus norvegicus GN=Padi4 PE=2 SV=1 | 199 | 605 | 2.0E-43 |
sp|Q9Z183|PADI4_MOUSE | Protein-arginine deiminase type-4 OS=Mus musculus GN=Padi4 PE=2 SV=3 | 199 | 605 | 3.0E-43 |
sp|O88806|PADI1_RAT | Protein-arginine deiminase type-1 OS=Rattus norvegicus GN=Padi1 PE=2 SV=1 | 199 | 605 | 9.0E-41 |
sp|P20717|PADI2_RAT | Protein-arginine deiminase type-2 OS=Rattus norvegicus GN=Padi2 PE=1 SV=1 | 199 | 605 | 1.0E-40 |
sp|Q9Y2J8|PADI2_HUMAN | Protein-arginine deiminase type-2 OS=Homo sapiens GN=PADI2 PE=1 SV=2 | 199 | 605 | 4.0E-40 |
sp|Q08642|PADI2_MOUSE | Protein-arginine deiminase type-2 OS=Mus musculus GN=Padi2 PE=1 SV=2 | 199 | 605 | 5.0E-40 |
sp|Q9Z185|PADI1_MOUSE | Protein-arginine deiminase type-1 OS=Mus musculus GN=Padi1 PE=1 SV=1 | 199 | 605 | 1.0E-38 |
sp|Q6TGC4|PADI6_HUMAN | Protein-arginine deiminase type-6 OS=Homo sapiens GN=PADI6 PE=1 SV=3 | 260 | 605 | 5.0E-30 |
sp|Q8K3V4|PADI6_MOUSE | Protein-arginine deiminase type-6 OS=Mus musculus GN=Padi6 PE=1 SV=2 | 260 | 605 | 3.0E-27 |
GO Term | Description | Terminal node |
---|---|---|
GO:0004668 | protein-arginine deiminase activity | Yes |
GO:0005509 | calcium ion binding | Yes |
GO:0005737 | cytoplasm | Yes |
GO:0016787 | hydrolase activity | No |
GO:0016813 | hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amidines | No |
GO:0046872 | metal ion binding | No |
GO:0016810 | hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds | No |
GO:0005488 | binding | No |
GO:0110165 | cellular anatomical entity | No |
GO:0003824 | catalytic activity | No |
GO:0005575 | cellular_component | No |
GO:0003674 | molecular_function | No |
GO:0043169 | cation binding | No |
GO:0043167 | ion binding | No |
SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
---|---|---|
Yes | 1 - 20 | 0.45 |
Expression values
Label | Description | Expression (RPKM) | Confidence interval (low) | Confidence interval (high) |
---|---|---|---|---|
SC16a | Pure fungal culture | 0.58 | 0.0 | 1.21 |
CcL | In ants, during behavior modification | 0.29 | 0.0 | 0.75 |
CcD | In ants, recently dead | 0.00 | 0.0 | 0.00 |
Differential expression
Label1 | Label2 | Q-value | Significant difference |
---|---|---|---|
SC16a | CcL | 1.0 | no |
SC16a | CcD | 1.0 | no |
CcL | CcD | 1.0 | no |
Type of sequence | Sequence |
---|---|
Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
Protein | >Ophio5|2830 MATFLRLTFLTAIIHSIHAAILQPHIRADTNRDGIVDVDGSSDSYDKTSWTPERGAIFLANIGDKTLRCFTQDAN GNPLSENELALCNDAAGHLLLAPEYAAPLRTLPIDVSADATARIYATARAATERVRIFVLDDVSKPASTSSWRLV DPEFSFNSTQLKSGIFLGLDGREPVIDAEVWDGSVTVCFDVRDGAERVSDKVALKMAPVLTHHHLQTVETLISVS TGDTDQRFISQLDEARAAAGLKSPLLLINGTDDIWAQDFIEPAYTSMPGPDGPISLRIILRSPQSSRSAGRKVFE QFRGPGIGGIQPLSGIGSGFGKRHINSLGNLETIPPYTSKDGVEYKAGRTIMGKHFGDMPAKSILGFLHGQRLQP PLLLETGWLLVGHVDEFVQFVPYENDLGFTIAIADTRSAVRLMQELEKDGHGGVLACTYPANDIDMADVSDAGIG VTISDLASNQTFLDGNAYAQKYMDANLEMLLAEIPLSPEDVIRVPTLFRTIDYLYPMGTDGTPRWKDPPPKGEKQ VAAFNPEAINGIVIGKHYVSPKTFGPVVDGVDVLARATEAAYARAGMTVHYVDDFKSHHLSTGEVHCGSNTLRQT DLIWWARGMKQ |
Coding | >Ophio5|2830 ATGGCAACCTTTCTACGCCTCACGTTCTTGACAGCCATCATCCATTCCATCCACGCGGCAATTTTGCAACCTCAT ATTCGCGCGGACACCAACAGGGATGGAATCGTCGACGTCGACGGTTCCTCGGACTCGTACGACAAGACATCCTGG ACCCCAGAGCGTGGAGCCATCTTCCTAGCGAATATCGGTGACAAGACTCTACGTTGCTTCACCCAGGACGCGAAT GGGAATCCCCTGAGCGAAAATGAATTGGCATTATGCAACGATGCGGCGGGTCATCTTCTCCTTGCTCCGGAATAC GCGGCGCCCCTTCGAACACTCCCTATCGACGTGTCGGCCGATGCCACGGCTCGGATTTACGCTACAGCTCGAGCG GCGACGGAACGCGTTCGAATCTTTGTCCTCGATGACGTTTCCAAGCCGGCATCGACTTCGTCCTGGCGTCTCGTC GATCCCGAGTTCTCCTTCAACTCGACCCAACTCAAGTCTGGTATCTTTCTCGGCTTGGACGGTAGAGAGCCTGTG ATAGACGCTGAAGTTTGGGACGGTTCTGTCACTGTGTGTTTTGACGTCAGGGATGGCGCAGAGCGTGTCTCGGAC AAGGTAGCTCTGAAGATGGCGCCGGTGCTCACCCATCATCACCTCCAAACAGTCGAGACCTTGATCAGTGTCTCT ACAGGGGACACTGACCAACGTTTCATCAGCCAATTGGACGAAGCCAGGGCTGCGGCCGGTCTCAAAAGCCCCCTA CTGCTCATCAACGGAACAGACGATATCTGGGCCCAGGACTTTATAGAGCCGGCCTACACAAGCATGCCCGGGCCA GACGGTCCCATCTCGCTCCGTATAATACTTCGCTCACCACAGTCTAGCCGATCAGCAGGACGCAAGGTATTTGAG CAGTTTCGCGGCCCGGGCATCGGAGGAATCCAACCCCTTAGCGGAATCGGATCTGGATTTGGCAAGCGTCACATC AACAGCCTCGGAAACCTCGAGACGATTCCTCCCTACACCTCAAAGGATGGCGTCGAGTACAAGGCTGGCCGCACC ATCATGGGCAAGCACTTTGGTGATATGCCTGCAAAGTCGATACTCGGCTTTCTACACGGACAGCGTCTGCAGCCT CCTTTGCTACTCGAGACCGGCTGGCTCCTCGTCGGCCACGTAGACGAGTTCGTTCAGTTCGTCCCCTACGAAAAC GATCTAGGCTTCACCATTGCCATTGCAGATACCAGGTCGGCAGTGCGTCTTATGCAGGAACTAGAGAAAGACGGC CACGGCGGCGTCCTTGCCTGCACCTACCCAGCCAACGACATCGACATGGCCGACGTCAGCGACGCGGGCATAGGC GTAACCATATCAGACCTCGCGAGCAACCAGACATTTCTAGATGGCAACGCCTACGCGCAGAAATACATGGACGCG AACCTGGAGATGCTACTGGCCGAAATCCCTCTCTCCCCAGAGGACGTTATTCGTGTGCCTACCCTCTTCCGCACC ATCGACTACCTATACCCGATGGGCACCGACGGGACTCCGCGGTGGAAGGACCCGCCTCCCAAAGGCGAGAAGCAA GTGGCGGCCTTCAACCCAGAGGCCATCAACGGCATCGTCATCGGCAAGCACTACGTGAGCCCCAAGACGTTTGGA CCGGTTGTCGACGGGGTGGATGTGCTTGCGAGAGCGACCGAGGCGGCGTACGCAAGGGCCGGGATGACGGTTCAC TATGTTGATGATTTCAAGAGTCATCATCTGTCCACTGGCGAGGTTCATTGTGGGAGTAATACGCTGCGGCAGACT GACTTGATTTGGTGGGCAAGGGGGATGAAGCAG |
Transcript | >Ophio5|2830 ATGGCAACCTTTCTACGCCTCACGTTCTTGACAGCCATCATCCATTCCATCCACGCGGCAATTTTGCAACCTCAT ATTCGCGCGGACACCAACAGGGATGGAATCGTCGACGTCGACGGTTCCTCGGACTCGTACGACAAGACATCCTGG ACCCCAGAGCGTGGAGCCATCTTCCTAGCGAATATCGGTGACAAGACTCTACGTTGCTTCACCCAGGACGCGAAT GGGAATCCCCTGAGCGAAAATGAATTGGCATTATGCAACGATGCGGCGGGTCATCTTCTCCTTGCTCCGGAATAC GCGGCGCCCCTTCGAACACTCCCTATCGACGTGTCGGCCGATGCCACGGCTCGGATTTACGCTACAGCTCGAGCG GCGACGGAACGCGTTCGAATCTTTGTCCTCGATGACGTTTCCAAGCCGGCATCGACTTCGTCCTGGCGTCTCGTC GATCCCGAGTTCTCCTTCAACTCGACCCAACTCAAGTCTGGTATCTTTCTCGGCTTGGACGGTAGAGAGCCTGTG ATAGACGCTGAAGTTTGGGACGGTTCTGTCACTGTGTGTTTTGACGTCAGGGATGGCGCAGAGCGTGTCTCGGAC AAGGTAGCTCTGAAGATGGCGCCGGTGCTCACCCATCATCACCTCCAAACAGTCGAGACCTTGATCAGTGTCTCT ACAGGGGACACTGACCAACGTTTCATCAGCCAATTGGACGAAGCCAGGGCTGCGGCCGGTCTCAAAAGCCCCCTA CTGCTCATCAACGGAACAGACGATATCTGGGCCCAGGACTTTATAGAGCCGGCCTACACAAGCATGCCCGGGCCA GACGGTCCCATCTCGCTCCGTATAATACTTCGCTCACCACAGTCTAGCCGATCAGCAGGACGCAAGGTATTTGAG CAGTTTCGCGGCCCGGGCATCGGAGGAATCCAACCCCTTAGCGGAATCGGATCTGGATTTGGCAAGCGTCACATC AACAGCCTCGGAAACCTCGAGACGATTCCTCCCTACACCTCAAAGGATGGCGTCGAGTACAAGGCTGGCCGCACC ATCATGGGCAAGCACTTTGGTGATATGCCTGCAAAGTCGATACTCGGCTTTCTACACGGACAGCGTCTGCAGCCT CCTTTGCTACTCGAGACCGGCTGGCTCCTCGTCGGCCACGTAGACGAGTTCGTTCAGTTCGTCCCCTACGAAAAC GATCTAGGCTTCACCATTGCCATTGCAGATACCAGGTCGGCAGTGCGTCTTATGCAGGAACTAGAGAAAGACGGC CACGGCGGCGTCCTTGCCTGCACCTACCCAGCCAACGACATCGACATGGCCGACGTCAGCGACGCGGGCATAGGC GTAACCATATCAGACCTCGCGAGCAACCAGACATTTCTAGATGGCAACGCCTACGCGCAGAAATACATGGACGCG AACCTGGAGATGCTACTGGCCGAAATCCCTCTCTCCCCAGAGGACGTTATTCGTGTGCCTACCCTCTTCCGCACC ATCGACTACCTATACCCGATGGGCACCGACGGGACTCCGCGGTGGAAGGACCCGCCTCCCAAAGGCGAGAAGCAA GTGGCGGCCTTCAACCCAGAGGCCATCAACGGCATCGTCATCGGCAAGCACTACGTGAGCCCCAAGACGTTTGGA CCGGTTGTCGACGGGGTGGATGTGCTTGCGAGAGCGACCGAGGCGGCGTACGCAAGGGCCGGGATGACGGTTCAC TATGTTGATGATTTCAAGAGTCATCATCTGTCCACTGGCGAGGTTCATTGTGGGAGTAATACGCTGCGGCAGACT GACTTGATTTGGTGGGCAAGGGGGATGAAGCAGTAG |
Gene | >Ophio5|2830 ATGGCAACCTTTCTACGCCTCACGTTCTTGACAGCCATCATCCATTCCATCCACGCGGCAATTTTGCAACCTCAT ATTCGCGCGGACACCAACAGGGATGGAATCGTCGACGTCGACGGTTCCTCGGACTCGTACGACAAGACATCCTGG ACCCCAGAGCGTGGAGCCATCTTCCTAGCGAATATCGGTGACAAGACTCTACGTTGCTTCACCCAGGACGCGAAT GGGAATCCCCTGAGCGAAAATGAATTGGCATTATGCAACGATGCGGCGGGTCATCTTCTCCTTGCTCCGGAATAC GCGGCGCCCCTTCGAACACTCCCTATCGACGTGTCGGCCGATGCCACGGCTCGGATTTACGCTACAGCTCGAGCG GCGACGGAACGCGTTCGAATCTTTGTCCTCGATGACGTTTCCAAGCCGGCATCGACTTCGTCCTGGCGTCTCGTC GATCCCGAGTTCTCCTTCAACTCGACCCAACTCAAGTCTGGTATCTTTCTCGGCTTGGACGGTAGAGAGCCTGTG ATAGACGCTGAAGTTTGGGACGGTTCTGTCACTGTGTGTTTTGACGTCAGGGATGGCGCAGAGCGTGTCTCGGAC AAGGTAGCTCTGAAGATGGCGCCGGTGCTCACCCATCATCACCTCCAAACAGTCGAGACCTTGATCAGTGTCTCT ACAGGGGACACTGACCAACGTTTCATCAGCCAATTGGACGAAGCCAGGGCTGCGGCCGGTCTCAAAAGCCCCCTA CTGCTCATCAACGGAACAGACGATATCTGGGCCCAGGACTTTATAGAGCCGGCCTACACAAGCATGCCCGGGCCA GACGGTCCCATCTCGCTCCGTATAATACTTCGCTCACCACAGTCTAGCCGATCAGCAGGACGCAAGGTATTTGAG CAGTTTCGCGGCCCGGGCATCGGAGGAATCCAACCCCTTAGCGGAATCGGATCTGGATTTGGCAAGCGTCACATC AACAGCCTCGGAAACCTCGAGACGATTCCTCCCTACACCTCAAAGGATGGCGTCGAGTACAAGGCTGGCCGCACC ATCATGGGCAAGCACTTTGGTGATATGCCTGCAAAGTCGATACTCGGCTTTCTACACGGACAGCGTCTGCAGCCT CCTTTGCTACTCGAGACCGGCTGGCTCCTCGTCGGCCACGTAGACGAGTTCGTTCAGTTCGTCCCCTACGAAAAC GATCTAGGCTTCACCATTGCCATTGCAGATACCAGGTCGGCAGTGCGTCTTATGCAGGAACTAGAGAAAGACGGC CACGGCGGCGTCCTTGCCTGCACCTACCCAGCCAACGACATCGACATGGCCGACGTCAGCGACGCGGGCATAGGC GTAACCATATCAGACCTCGCGAGCAACCAGACATTTCTAGATGGCAACGCCTACGCGCAGAAATACATGGACGCG AACCTGGAGATGCTACTGGCCGAAATCCCTCTCTCCCCAGAGGACGTTATTCGTGTGCCTACCCTCTTCCGCACC ATCGACTACCTATACCCGATGGGCACCGACGGGACTCCGCGGTGGAAGGACCCGCCTCCCAAAGGCGAGAAGCAA GTGGCGGCCTTCAACCCAGAGGCCATCAACGGCATCGTCATCGGCAAGCACTACGTGAGCCCCAAGACGTTTGGA CCGGTTGTCGACGGGGTGGATGTGCTTGCGAGAGCGACCGAGGCGGCGTACGCAAGGGCCGGGATGACGGTTCAC TATGTTGATGATTTCAAGAGTCATCATCTGTCCACTGGCGAGGTTCATTGTGGGAGTAATACGCTGCGGCAGACT GACTTGATTTGGTGGGCAAGGGGGATGAAGCAGTAG |