© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Ophio5|2783 |
| Gene name | |
| Location | scaffold_224:2256..2952 |
| Strand | + |
| Gene length (bp) | 696 |
| Transcript length (bp) | 696 |
| Coding sequence length (bp) | 693 |
| Protein length (aa) | 231 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF08510 | PIG-P | PIG-P | 9.9E-54 | 85 | 223 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|O13904|MUG84_SCHPO | Meiotically up-regulated gene 84 protein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=mug84 PE=1 SV=3 | 33 | 196 | 2.0E-37 |
| sp|Q9JHG1|PIGP_MOUSE | Phosphatidylinositol N-acetylglucosaminyltransferase subunit P OS=Mus musculus GN=Pigp PE=2 SV=1 | 83 | 228 | 4.0E-14 |
| sp|Q5R946|PIGP_PONAB | Phosphatidylinositol N-acetylglucosaminyltransferase subunit P OS=Pongo abelii GN=PIGP PE=2 SV=1 | 83 | 228 | 9.0E-14 |
| sp|P57054|PIGP_HUMAN | Phosphatidylinositol N-acetylglucosaminyltransferase subunit P OS=Homo sapiens GN=PIGP PE=1 SV=3 | 83 | 228 | 2.0E-13 |
| sp|O64792|PIGP_ARATH | Phosphatidylinositol N-acetylglucosaminyltransferase subunit P OS=Arabidopsis thaliana GN=At1g61280 PE=2 SV=1 | 85 | 150 | 2.0E-09 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|O13904|MUG84_SCHPO | Meiotically up-regulated gene 84 protein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=mug84 PE=1 SV=3 | 33 | 196 | 2.0E-37 |
| sp|Q9JHG1|PIGP_MOUSE | Phosphatidylinositol N-acetylglucosaminyltransferase subunit P OS=Mus musculus GN=Pigp PE=2 SV=1 | 83 | 228 | 4.0E-14 |
| sp|Q5R946|PIGP_PONAB | Phosphatidylinositol N-acetylglucosaminyltransferase subunit P OS=Pongo abelii GN=PIGP PE=2 SV=1 | 83 | 228 | 9.0E-14 |
| sp|P57054|PIGP_HUMAN | Phosphatidylinositol N-acetylglucosaminyltransferase subunit P OS=Homo sapiens GN=PIGP PE=1 SV=3 | 83 | 228 | 2.0E-13 |
| sp|O64792|PIGP_ARATH | Phosphatidylinositol N-acetylglucosaminyltransferase subunit P OS=Arabidopsis thaliana GN=At1g61280 PE=2 SV=1 | 85 | 150 | 2.0E-09 |
| sp|Q04082|GPI19_YEAST | Phosphatidylinositol N-acetylglucosaminyltransferase subunit GPI19 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=GPI19 PE=1 SV=1 | 85 | 176 | 3.0E-08 |
| sp|Q756D4|GPI19_ASHGO | Phosphatidylinositol N-acetylglucosaminyltransferase subunit GPI19 OS=Ashbya gossypii (strain ATCC 10895 / CBS 109.51 / FGSC 9923 / NRRL Y-1056) GN=GPI19 PE=3 SV=1 | 123 | 230 | 1.0E-06 |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 29 | 0.45 |
| Domain # | Start | End | Length |
|---|---|---|---|
| 1 | 88 | 107 | 19 |
| 2 | 127 | 149 | 22 |
Expression values
| Label | Description | Expression (RPKM) | Confidence interval (low) | Confidence interval (high) |
|---|---|---|---|---|
| SC16a | Pure fungal culture | 22.29 | 8.12 | 36.46 |
| CcL | In ants, during behavior modification | 15.95 | 5.06 | 26.84 |
| CcD | In ants, recently dead | 22.55 | 8.30 | 36.80 |
Differential expression
| Label1 | Label2 | Q-value | Significant difference |
|---|---|---|---|
| SC16a | CcL | 0.319004 | no |
| SC16a | CcD | 0.976907 | no |
| CcL | CcD | 0.304204 | no |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Ophio5|2783 MSASSEEKDEYLSDNQSSDSSGHEWPARPLSQTYFAPPFYGRPPTPLPPSPSLTSLLRPSRPTTPDASDDDNMAP VPRASPQVPTYEYYGFVLYLFSSLTFLLWLLWSYLPAPFLHGLGIYYYPNRWWALAIPAFLTMTLCYIYVALASY NTEILTLPMASVETVVDGAGKLAVIDAKGRLRGSSKRERKCDSNGRLRWREVWNEGTDAVMDIPLAGVCEVLYGD GREEAA |
| Coding | >Ophio5|2783 ATGTCGGCCTCATCGGAGGAGAAAGACGAGTATCTCTCGGATAACCAGTCCTCCGACTCGTCTGGTCACGAGTGG CCGGCTCGGCCCCTGTCGCAAACGTACTTCGCGCCGCCCTTCTACGGCCGCCCGCCGACGCCGCTGCCTCCTTCG CCGTCGCTGACGTCGCTCCTTCGACCGTCGCGCCCGACGACGCCAGACGCCTCGGACGATGACAACATGGCGCCG GTGCCCCGCGCGTCGCCCCAGGTGCCGACATATGAATACTACGGTTTCGTGCTGTACTTGTTCAGTAGCCTGACG TTTCTACTATGGCTCCTCTGGAGCTATCTACCGGCGCCCTTTCTGCATGGCCTGGGTATCTACTATTATCCGAAT CGGTGGTGGGCGCTGGCCATTCCTGCCTTTCTCACCATGACACTGTGCTACATCTATGTGGCGCTGGCTTCGTAC AACACGGAGATTCTTACGCTGCCCATGGCCAGCGTGGAGACGGTCGTCGACGGCGCAGGGAAGCTGGCCGTCATC GACGCCAAGGGCCGGCTACGTGGCAGCAGCAAGAGAGAGAGGAAGTGTGACAGCAACGGGCGCCTGAGGTGGAGG GAGGTCTGGAACGAGGGAACCGATGCCGTCATGGACATACCCTTGGCCGGAGTGTGTGAGGTCCTCTACGGAGAC GGGCGCGAGGAAGCCGCC |
| Transcript | >Ophio5|2783 ATGTCGGCCTCATCGGAGGAGAAAGACGAGTATCTCTCGGATAACCAGTCCTCCGACTCGTCTGGTCACGAGTGG CCGGCTCGGCCCCTGTCGCAAACGTACTTCGCGCCGCCCTTCTACGGCCGCCCGCCGACGCCGCTGCCTCCTTCG CCGTCGCTGACGTCGCTCCTTCGACCGTCGCGCCCGACGACGCCAGACGCCTCGGACGATGACAACATGGCGCCG GTGCCCCGCGCGTCGCCCCAGGTGCCGACATATGAATACTACGGTTTCGTGCTGTACTTGTTCAGTAGCCTGACG TTTCTACTATGGCTCCTCTGGAGCTATCTACCGGCGCCCTTTCTGCATGGCCTGGGTATCTACTATTATCCGAAT CGGTGGTGGGCGCTGGCCATTCCTGCCTTTCTCACCATGACACTGTGCTACATCTATGTGGCGCTGGCTTCGTAC AACACGGAGATTCTTACGCTGCCCATGGCCAGCGTGGAGACGGTCGTCGACGGCGCAGGGAAGCTGGCCGTCATC GACGCCAAGGGCCGGCTACGTGGCAGCAGCAAGAGAGAGAGGAAGTGTGACAGCAACGGGCGCCTGAGGTGGAGG GAGGTCTGGAACGAGGGAACCGATGCCGTCATGGACATACCCTTGGCCGGAGTGTGTGAGGTCCTCTACGGAGAC GGGCGCGAGGAAGCCGCCTGA |
| Gene | >Ophio5|2783 ATGTCGGCCTCATCGGAGGAGAAAGACGAGTATCTCTCGGATAACCAGTCCTCCGACTCGTCTGGTCACGAGTGG CCGGCTCGGCCCCTGTCGCAAACGTACTTCGCGCCGCCCTTCTACGGCCGCCCGCCGACGCCGCTGCCTCCTTCG CCGTCGCTGACGTCGCTCCTTCGACCGTCGCGCCCGACGACGCCAGACGCCTCGGACGATGACAACATGGCGCCG GTGCCCCGCGCGTCGCCCCAGGTGCCGACATATGAATACTACGGTTTCGTGCTGTACTTGTTCAGTAGCCTGACG TTTCTACTATGGCTCCTCTGGAGCTATCTACCGGCGCCCTTTCTGCATGGCCTGGGTATCTACTATTATCCGAAT CGGTGGTGGGCGCTGGCCATTCCTGCCTTTCTCACCATGACACTGTGCTACATCTATGTGGCGCTGGCTTCGTAC AACACGGAGATTCTTACGCTGCCCATGGCCAGCGTGGAGACGGTCGTCGACGGCGCAGGGAAGCTGGCCGTCATC GACGCCAAGGGCCGGCTACGTGGCAGCAGCAAGAGAGAGAGGAAGTGTGACAGCAACGGGCGCCTGAGGTGGAGG GAGGTCTGGAACGAGGGAACCGATGCCGTCATGGACATACCCTTGGCCGGAGTGTGTGAGGTCCTCTACGGAGAC GGGCGCGAGGAAGCCGCCTGA |