© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Ophio5|278 |
| Gene name | |
| Location | scaffold_106:15633..16313 |
| Strand | - |
| Gene length (bp) | 680 |
| Transcript length (bp) | 597 |
| Coding sequence length (bp) | 594 |
| Protein length (aa) | 198 |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 18 | 0.5 |
| Domain # | Start | End | Length |
|---|---|---|---|
| 1 | 5 | 27 | 22 |
| 2 | 84 | 106 | 22 |
| 3 | 119 | 141 | 22 |
| 4 | 156 | 178 | 22 |
Expression values
| Label | Description | Expression (RPKM) | Confidence interval (low) | Confidence interval (high) |
|---|---|---|---|---|
| SC16a | Pure fungal culture | 97.07 | 49.40 | 144.75 |
| CcL | In ants, during behavior modification | 107.90 | 55.85 | 159.95 |
| CcD | In ants, recently dead | 93.70 | 47.36 | 140.03 |
Differential expression
| Label1 | Label2 | Q-value | Significant difference |
|---|---|---|---|
| SC16a | CcL | 0.710231 | no |
| SC16a | CcD | 0.910426 | no |
| CcL | CcD | 0.600994 | no |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Ophio5|278 MTRVSIYASALTGFVAATAMLIASIATPNWISYSVTTAKGDHVGKNIGLHKSCSNLGTPHCHEYPTADMCENGLR SFCSLWRTISFMASLATILCLGCLTSFLVVMRGGKYKRETGWPFVTGMLSVVAVVELVLVSMMAYLLNYDSQFSV PGWHLAFSWYLATFSAVICVLSAAGLVASAYLMPPEGGYESLADPVDG |
| Coding | >Ophio5|278 ATGACTCGCGTGTCCATCTACGCATCGGCCCTCACCGGCTTTGTGGCCGCCACGGCGATGCTCATCGCCTCCATT GCCACCCCTAACTGGATATCGTATTCGGTAACGACGGCGAAGGGCGATCATGTGGGGAAGAACATCGGCCTCCAT AAGAGCTGCTCGAATCTCGGCACGCCGCATTGTCACGAGTATCCGACGGCGGACATGTGCGAGAACGGGTTGAGA AGTTTTTGCTCCCTGTGGCGTACCATAAGCTTCATGGCGTCTCTCGCTACCATTCTGTGCCTGGGCTGCCTGACG AGCTTCCTCGTCGTCATGCGCGGTGGCAAGTATAAGCGCGAGACGGGCTGGCCCTTTGTCACCGGCATGCTGTCC GTCGTTGCCGTTGTCGAGCTGGTGCTCGTGTCCATGATGGCTTACCTCTTGAACTACGACAGCCAGTTCAGCGTC CCCGGCTGGCACCTCGCCTTTTCGTGGTATCTCGCCACGTTTAGCGCCGTCATCTGCGTCCTTTCCGCCGCCGGA CTGGTGGCTTCGGCCTATCTCATGCCGCCCGAGGGGGGTTACGAGTCGCTGGCGGATCCTGTCGACGGC |
| Transcript | >Ophio5|278 ATGACTCGCGTGTCCATCTACGCATCGGCCCTCACCGGCTTTGTGGCCGCCACGGCGATGCTCATCGCCTCCATT GCCACCCCTAACTGGATATCGTATTCGGTAACGACGGCGAAGGGCGATCATGTGGGGAAGAACATCGGCCTCCAT AAGAGCTGCTCGAATCTCGGCACGCCGCATTGTCACGAGTATCCGACGGCGGACATGTGCGAGAACGGGTTGAGA AGTTTTTGCTCCCTGTGGCGTACCATAAGCTTCATGGCGTCTCTCGCTACCATTCTGTGCCTGGGCTGCCTGACG AGCTTCCTCGTCGTCATGCGCGGTGGCAAGTATAAGCGCGAGACGGGCTGGCCCTTTGTCACCGGCATGCTGTCC GTCGTTGCCGTTGTCGAGCTGGTGCTCGTGTCCATGATGGCTTACCTCTTGAACTACGACAGCCAGTTCAGCGTC CCCGGCTGGCACCTCGCCTTTTCGTGGTATCTCGCCACGTTTAGCGCCGTCATCTGCGTCCTTTCCGCCGCCGGA CTGGTGGCTTCGGCCTATCTCATGCCGCCCGAGGGGGGTTACGAGTCGCTGGCGGATCCTGTCGACGGCTAG |
| Gene | >Ophio5|278 ATGACTCGCGTGTCCATCTACGCATCGGCCCTCACCGGCTTTGTGGCCGGTACGTATCTAATGCCTCTCTCTCTC TCTCTCTTCCGCCGACGCCGGCCATGTCATGCCTCAGCTGACGGGGTCGCCATGCAGCCACGGCGATGCTCATCG CCTCCATTGCCACCCCTAACTGGATATCGTATTCGGTAACGACGGCGAAGGGCGATCATGTGGGGAAGAACATCG GCCTCCATAAGAGCTGCTCGAATCTCGGCACGCCGCATTGTCACGAGTATCCGACGGCGGACATGTGCGAGAACG GGTTGAGAAGTTTTTGCTCCCTGTGGCGTACCATAAGCTTCATGGCGTCTCTCGCTACCATTCTGTGCCTGGGCT GCCTGACGAGCTTCCTCGTCGTCATGCGCGGTGGCAAGTATAAGCGCGAGACGGGCTGGCCCTTTGTCACCGGCA TGCTGTCCGTCGTTGCCGTTGTCGAGCTGGTGCTCGTGTCCATGATGGCTTACCTCTTGAACTACGACAGCCAGT TCAGCGTCCCCGGCTGGCACCTCGCCTTTTCGTGGTATCTCGCCACGTTTAGCGCCGTCATCTGCGTCCTTTCCG CCGCCGGACTGGTGGCTTCGGCCTATCTCATGCCGCCCGAGGGGGGTTACGAGTCGCTGGCGGATCCTGTCGACG GCTAG |