© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Ophio5|2720 |
| Gene name | |
| Location | scaffold_22:20290..22567 |
| Strand | + |
| Gene length (bp) | 2277 |
| Transcript length (bp) | 2136 |
| Coding sequence length (bp) | 2133 |
| Protein length (aa) | 711 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF00628 | PHD | PHD-finger | 4.7E-08 | 635 | 683 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|A8MW92|P20L1_HUMAN | PHD finger protein 20-like protein 1 OS=Homo sapiens GN=PHF20L1 PE=1 SV=2 | 627 | 681 | 8.0E-09 |
| sp|Q4V9H5|P20L1_RAT | PHD finger protein 20-like protein 1 OS=Rattus norvegicus GN=Phf20l1 PE=1 SV=2 | 627 | 681 | 1.0E-08 |
| sp|Q8CCJ9|P20L1_MOUSE | PHD finger protein 20-like protein 1 OS=Mus musculus GN=Phf20l1 PE=1 SV=2 | 627 | 681 | 2.0E-08 |
| sp|Q10362|SET3_SCHPO | SET domain-containing protein 3 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=set3 PE=1 SV=1 | 634 | 681 | 8.0E-08 |
| sp|Q9BVI0|PHF20_HUMAN | PHD finger protein 20 OS=Homo sapiens GN=PHF20 PE=1 SV=2 | 634 | 683 | 3.0E-07 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|A8MW92|P20L1_HUMAN | PHD finger protein 20-like protein 1 OS=Homo sapiens GN=PHF20L1 PE=1 SV=2 | 627 | 681 | 8.0E-09 |
| sp|Q4V9H5|P20L1_RAT | PHD finger protein 20-like protein 1 OS=Rattus norvegicus GN=Phf20l1 PE=1 SV=2 | 627 | 681 | 1.0E-08 |
| sp|Q8CCJ9|P20L1_MOUSE | PHD finger protein 20-like protein 1 OS=Mus musculus GN=Phf20l1 PE=1 SV=2 | 627 | 681 | 2.0E-08 |
| sp|Q10362|SET3_SCHPO | SET domain-containing protein 3 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=set3 PE=1 SV=1 | 634 | 681 | 8.0E-08 |
| sp|Q9BVI0|PHF20_HUMAN | PHD finger protein 20 OS=Homo sapiens GN=PHF20 PE=1 SV=2 | 634 | 683 | 3.0E-07 |
| sp|Q8BLG0|PHF20_MOUSE | PHD finger protein 20 OS=Mus musculus GN=Phf20 PE=1 SV=2 | 634 | 683 | 3.0E-07 |
| sp|Q08923|CTI6_YEAST | Histone deacetylase complex subunit CTI6 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=CTI6 PE=1 SV=1 | 634 | 681 | 1.0E-06 |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 14 | 0.45 |
Expression values
| Label | Description | Expression (RPKM) | Confidence interval (low) | Confidence interval (high) |
|---|---|---|---|---|
| SC16a | Pure fungal culture | 197.01 | 91.80 | 302.22 |
| CcL | In ants, during behavior modification | 227.83 | 87.83 | 367.84 |
| CcD | In ants, recently dead | 119.01 | 60.42 | 177.60 |
Differential expression
| Label1 | Label2 | Q-value | Significant difference |
|---|---|---|---|
| SC16a | CcL | 0.656787 | no |
| SC16a | CcD | 0.043531 | yes |
| CcL | CcD | 0.019504 | yes |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Ophio5|2720 MSEHHLSASFGDPIAQPQTPRQTPTLVTFPSPSFDTPKPYQGSFVEPGGLTPRFAEEYSVFNSTPGNLRGSQGPF AEFLPPIASTFSRGHKRLLSAESHPFDVPPHASHLATNVEKSEPTCHLPLSPPGQPPPSVSTGGIQPSPDLARSS SLKKCRKHSDARPSQVLSPPPSSNKGGRKLAPKLTMLSDHPFCQTDLVDPAQHDMSAVLMGHSGDLFGYPLSAPA SASSNYWDPSMSMPMDLEFNAAVHGVMHPSAPSSHRHTGSFDWNADITMFQDVSAPVQSQDNAQSPRQERVLAPK PAASAPTANPVTLEDPFGIMNPGDGVDPGLLFGRPHTSALDSGFGSSSQPRPAERAAPSFAKPMPGELRRANSAQ GPRSAKLTDRASIGSPIKSKARPGLSRSCSETRGRRAVGRTMQPAPMETNLSHGVLPAGCRPTGRCSPPKTVPRV SSLASIPETSPQYRPRTSVRFTIDSRGRARAETTVVGEGPISDKRLHRSRSAAASRSWDSSDDDSSDDEPIIIPS RNSSFNASYALPDPCKPVGSIFHTSCRSGSDRSRSNSATGPESEAETVVNDKGGDAMRELRKVVEDRQKRSRRMV SGRPQGLISTNMASFPGGIISPTSLADSSQGNGVRCVCEDTSTDEADGFMLQCESCEMWLHGKCINVTKRSMPRV YICCFCANTGRRCRDNGLGIAGLLSPLANKSYRTFR |
| Coding | >Ophio5|2720 ATGAGCGAGCATCATCTCTCTGCCAGCTTTGGAGATCCAATAGCCCAGCCTCAAACGCCGAGACAAACTCCCACC TTGGTCACCTTCCCGAGTCCGAGTTTTGACACGCCCAAGCCCTATCAGGGCTCCTTCGTCGAGCCCGGTGGCCTG ACCCCGAGATTCGCCGAGGAATACTCCGTTTTCAATTCAACTCCAGGGAACCTCCGAGGCTCTCAGGGTCCGTTT GCCGAGTTCCTCCCGCCCATAGCCTCGACTTTTTCGAGAGGCCATAAGCGGCTGCTATCTGCCGAGAGCCATCCC TTCGACGTCCCCCCGCATGCGAGCCACCTGGCGACCAACGTGGAAAAGTCCGAACCGACCTGCCACTTGCCGCTT TCGCCACCCGGGCAGCCGCCGCCGTCAGTGTCTACTGGTGGTATCCAACCGAGCCCCGACCTGGCCCGAAGCTCG TCGTTGAAAAAGTGCCGCAAGCACTCCGACGCCCGACCATCCCAGGTCCTGTCGCCGCCGCCGTCGTCCAACAAG GGAGGGCGCAAGCTCGCCCCCAAACTCACCATGCTCTCCGACCACCCCTTTTGCCAGACGGACCTTGTCGACCCC GCACAGCACGACATGTCTGCTGTCCTGATGGGCCACTCGGGCGACCTGTTCGGATATCCCTTGTCTGCCCCGGCG TCTGCGTCGTCTAATTACTGGGACCCGTCCATGTCCATGCCCATGGACCTCGAATTCAATGCCGCCGTGCACGGC GTCATGCATCCTTCAGCCCCGTCGTCACACCGCCACACGGGATCCTTTGATTGGAACGCCGATATTACCATGTTC CAAGACGTTTCCGCTCCGGTGCAGAGCCAGGATAACGCTCAGTCGCCTCGGCAAGAGAGGGTCCTCGCGCCGAAG CCGGCCGCGTCGGCCCCCACGGCGAATCCCGTCACGCTCGAGGACCCGTTCGGCATAATGAATCCCGGGGACGGC GTCGATCCGGGACTGCTATTTGGTCGCCCCCACACGTCGGCGCTGGACTCGGGCTTCGGCTCCTCGTCCCAGCCC AGGCCCGCCGAGAGGGCGGCGCCTTCGTTTGCCAAGCCGATGCCTGGTGAGCTGAGGAGGGCCAATAGCGCCCAG GGGCCGAGAAGTGCCAAACTGACGGACCGGGCATCGATCGGGTCGCCCATCAAGTCGAAGGCGCGCCCTGGGCTC AGCCGAAGCTGCAGCGAGACTCGGGGCAGGAGGGCCGTCGGGCGCACGATGCAACCCGCCCCGATGGAGACGAAT CTCAGCCACGGTGTCCTCCCGGCTGGCTGTCGGCCGACGGGGAGGTGCTCCCCGCCCAAGACGGTGCCGCGAGTG TCGAGCCTAGCATCGATCCCGGAGACGTCGCCTCAGTACCGGCCCCGCACGTCGGTCCGGTTCACCATCGACTCG CGTGGGCGGGCCAGGGCTGAGACAACAGTCGTCGGTGAGGGACCCATCTCAGACAAGCGTCTTCACCGCAGCAGA AGCGCGGCGGCCAGTCGGAGCTGGGATTCGTCGGATGACGATTCGTCGGACGATGAGCCCATAATCATCCCCAGC CGCAACAGCTCGTTCAATGCGTCGTACGCGCTGCCGGATCCTTGCAAGCCGGTGGGCTCCATCTTCCACACGTCA TGCCGCAGCGGCAGCGACCGCAGCAGGAGCAACTCGGCGACCGGGCCCGAGAGCGAGGCGGAGACGGTGGTCAAC GACAAGGGGGGCGACGCGATGAGGGAGCTCCGCAAGGTGGTCGAGGACCGACAAAAGCGGTCACGGCGGATGGTG AGCGGGCGGCCTCAGGGGCTCATTTCGACGAACATGGCCAGTTTCCCGGGCGGCATCATCTCACCGACGAGCCTG GCGGACTCGAGCCAGGGCAACGGAGTGCGGTGCGTGTGCGAGGACACGTCGACCGACGAAGCGGACGGCTTCATG CTCCAATGCGAGTCGTGTGAGATGTGGCTTCACGGCAAATGCATCAACGTGACGAAGCGGTCGATGCCGCGCGTG TACATCTGCTGCTTCTGCGCCAACACGGGTCGAAGATGCCGCGACAACGGGCTGGGCATAGCGGGACTGCTGTCG CCGCTGGCGAACAAGTCGTACCGAACCTTTCGG |
| Transcript | >Ophio5|2720 ATGAGCGAGCATCATCTCTCTGCCAGCTTTGGAGATCCAATAGCCCAGCCTCAAACGCCGAGACAAACTCCCACC TTGGTCACCTTCCCGAGTCCGAGTTTTGACACGCCCAAGCCCTATCAGGGCTCCTTCGTCGAGCCCGGTGGCCTG ACCCCGAGATTCGCCGAGGAATACTCCGTTTTCAATTCAACTCCAGGGAACCTCCGAGGCTCTCAGGGTCCGTTT GCCGAGTTCCTCCCGCCCATAGCCTCGACTTTTTCGAGAGGCCATAAGCGGCTGCTATCTGCCGAGAGCCATCCC TTCGACGTCCCCCCGCATGCGAGCCACCTGGCGACCAACGTGGAAAAGTCCGAACCGACCTGCCACTTGCCGCTT TCGCCACCCGGGCAGCCGCCGCCGTCAGTGTCTACTGGTGGTATCCAACCGAGCCCCGACCTGGCCCGAAGCTCG TCGTTGAAAAAGTGCCGCAAGCACTCCGACGCCCGACCATCCCAGGTCCTGTCGCCGCCGCCGTCGTCCAACAAG GGAGGGCGCAAGCTCGCCCCCAAACTCACCATGCTCTCCGACCACCCCTTTTGCCAGACGGACCTTGTCGACCCC GCACAGCACGACATGTCTGCTGTCCTGATGGGCCACTCGGGCGACCTGTTCGGATATCCCTTGTCTGCCCCGGCG TCTGCGTCGTCTAATTACTGGGACCCGTCCATGTCCATGCCCATGGACCTCGAATTCAATGCCGCCGTGCACGGC GTCATGCATCCTTCAGCCCCGTCGTCACACCGCCACACGGGATCCTTTGATTGGAACGCCGATATTACCATGTTC CAAGACGTTTCCGCTCCGGTGCAGAGCCAGGATAACGCTCAGTCGCCTCGGCAAGAGAGGGTCCTCGCGCCGAAG CCGGCCGCGTCGGCCCCCACGGCGAATCCCGTCACGCTCGAGGACCCGTTCGGCATAATGAATCCCGGGGACGGC GTCGATCCGGGACTGCTATTTGGTCGCCCCCACACGTCGGCGCTGGACTCGGGCTTCGGCTCCTCGTCCCAGCCC AGGCCCGCCGAGAGGGCGGCGCCTTCGTTTGCCAAGCCGATGCCTGGTGAGCTGAGGAGGGCCAATAGCGCCCAG GGGCCGAGAAGTGCCAAACTGACGGACCGGGCATCGATCGGGTCGCCCATCAAGTCGAAGGCGCGCCCTGGGCTC AGCCGAAGCTGCAGCGAGACTCGGGGCAGGAGGGCCGTCGGGCGCACGATGCAACCCGCCCCGATGGAGACGAAT CTCAGCCACGGTGTCCTCCCGGCTGGCTGTCGGCCGACGGGGAGGTGCTCCCCGCCCAAGACGGTGCCGCGAGTG TCGAGCCTAGCATCGATCCCGGAGACGTCGCCTCAGTACCGGCCCCGCACGTCGGTCCGGTTCACCATCGACTCG CGTGGGCGGGCCAGGGCTGAGACAACAGTCGTCGGTGAGGGACCCATCTCAGACAAGCGTCTTCACCGCAGCAGA AGCGCGGCGGCCAGTCGGAGCTGGGATTCGTCGGATGACGATTCGTCGGACGATGAGCCCATAATCATCCCCAGC CGCAACAGCTCGTTCAATGCGTCGTACGCGCTGCCGGATCCTTGCAAGCCGGTGGGCTCCATCTTCCACACGTCA TGCCGCAGCGGCAGCGACCGCAGCAGGAGCAACTCGGCGACCGGGCCCGAGAGCGAGGCGGAGACGGTGGTCAAC GACAAGGGGGGCGACGCGATGAGGGAGCTCCGCAAGGTGGTCGAGGACCGACAAAAGCGGTCACGGCGGATGGTG AGCGGGCGGCCTCAGGGGCTCATTTCGACGAACATGGCCAGTTTCCCGGGCGGCATCATCTCACCGACGAGCCTG GCGGACTCGAGCCAGGGCAACGGAGTGCGGTGCGTGTGCGAGGACACGTCGACCGACGAAGCGGACGGCTTCATG CTCCAATGCGAGTCGTGTGAGATGTGGCTTCACGGCAAATGCATCAACGTGACGAAGCGGTCGATGCCGCGCGTG TACATCTGCTGCTTCTGCGCCAACACGGGTCGAAGATGCCGCGACAACGGGCTGGGCATAGCGGGACTGCTGTCG CCGCTGGCGAACAAGTCGTACCGAACCTTTCGGTAG |
| Gene | >Ophio5|2720 ATGAGCGAGCATCATCTCTCTGCCAGGCAAGTCTTCTCTCTGTCCTTTCCCTATCCCCTTCCCCGGCCTCCTCCC CGGCTGACCTGTTTCTCCTGTCCGTTAGCTTTGGAGATCCAATAGCCCAGCCTCAAACGCCGAGACAAACTCCCA CCTTGGTCACCTTCCCGAGTCCGAGTTTTGACACGCCCAAGCCCTATCAGGGCTCCTTCGTCGAGCCCGGTGGCC TGACCCCGAGATTCGCCGAGGAATACTCCGTTTTCAATTCAACTCCAGGGAACCTCCGAGGCTCTCAGGGTCCGT TTGCCGAGTTCCTCCCGCCCATAGCCTCGACTTTTTCGAGAGGCCATAAGCGGCTGCTATCTGCCGAGAGCCATC CCTTCGACGTCCCCCCGCATGCGAGCCACCTGGCGACCAACGTGGAAAAGTCCGAACCGACCTGCCACTTGCCGC TTTCGCCACCCGGGCAGCCGCCGCCGTCAGTGTCTACTGGTGGTATCCAACCGAGCCCCGACCTGGCCCGAAGCT CGTCGTTGAAAAAGTGCCGCAAGCACTCCGACGCCCGACCATCCCAGGTCCTGTCGCCGCCGCCGTCGTCCAACA AGGGAGGGCGCAAGCTCGCCCCCAAACTCACCATGCTCTCCGACCACCCCTTTTGCCAGACGGACCTTGTCGACC CCGCACAGCACGACATGTCTGCTGTCCTGATGGGCCACTCGGGCGACCTGTTCGGATATCCCTTGTCTGCCCCGG CGTCTGCGTCGTCTAATTACTGGGACCCGTCCATGTCCATGCCCATGGACCTCGAATTCAATGCCGCCGTGCACG GCGTCATGCATCCTTCAGCCCCGTCGTCACACCGCCACACGGGATCCTTTGATTGGAACGCCGATATTACCATGT TCCAAGACGTTTCCGCTCCGGTGCAGAGCCAGGATAACGCTCAGTCGCCTCGGCAAGAGAGGGTCCTCGCGCCGA AGCCGGCCGCGTCGGCCCCCACGGCGAATCCCGTCACGCTCGAGGACCCGTTCGGCATAATGAATCCCGGGGACG GCGTCGATCCGGGACTGCTATTTGGTCGCCCCCACACGTCGGCGCTGGACTCGGGCTTCGGCTCCTCGTCCCAGC CCAGGCCCGCCGAGAGGGCGGCGCCTTCGTTTGCCAAGCCGATGCCTGGTGAGCTGAGGAGGGCCAATAGCGCCC AGGGGCCGAGAAGTGCCAAACTGACGGACCGGGCATCGATCGGGTCGCCCATCAAGTCGAAGGCGCGCCCTGGGC TCAGCCGAAGCTGCAGCGAGACTCGGGGCAGGAGGGCCGTCGGGCGCACGATGCAACCCGCCCCGATGGAGACGA ATCTCAGCCACGGTGTCCTCCCGGCTGGCTGTCGGCCGACGGGGAGGTGCTCCCCGCCCAAGACGGTGCCGCGAG TGTCGAGCCTAGCATCGATCCCGGAGACGTCGCCTCAGTACCGGCCCCGCACGTCGGTCCGGTTCACCATCGACT CGCGTGGGCGGGCCAGGGCTGAGACAACAGTCGTCGGTGAGGGACCCATCTCAGACAAGCGTCTTCACCGCAGCA GAAGCGCGGCGGCCAGTCGGAGCTGGGATTCGTCGGATGACGATTCGTCGGACGATGAGCCCATAATCATCCCCA GCCGCAACAGCTCGTTCAATGCGTCGTACGCGCTGCCGGATCCTTGCAAGCCGGTGGGCTCCATCTTCCACACGT CATGCCGCAGCGGCAGCGACCGCAGCAGGAGCAACTCGGCGACCGGGCCCGAGAGCGAGGCGGAGACGGTGGTCA ACGACAAGGGGGGCGACGCGATGAGGGAGCTCCGCAAGGTGGTCGAGGACCGACAAAAGCGGTCACGGCGGATGG TGAGCGGGCGGCCTCAGGGGCTCATTTCGACGAACATGGCCAGTTTCCCGGGCGGCATCATCTCACCGACGAGCC TGGCGGACTCGAGCCAGGGCAACGGAGTGCGGTGCGTGTGCGAGGACACGTCGACCGACGAAGCGGACGGCTTCA TGCTCCAATGGTGCGTTCCCACACCACCCCCAGGCTGGCCGGGGGAATGCGGCTGACGCCGGGGACGGGAGCAGC GAGTCGTGTGAGATGTGGCTTCACGGCAAATGCATCAACGTGACGAAGCGGTCGATGCCGCGCGTGTACATCTGC TGCTTCTGCGCCAACACGGGTCGAAGATGCCGCGACAACGGGCTGGGCATAGCGGGACTGCTGTCGCCGCTGGCG AACAAGTCGTACCGAACCTTTCGGTAG |