© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Ophio5|2719 |
| Gene name | |
| Location | scaffold_22:15801..17760 |
| Strand | - |
| Gene length (bp) | 1959 |
| Transcript length (bp) | 1803 |
| Coding sequence length (bp) | 1800 |
| Protein length (aa) | 600 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF01544 | CorA | CorA-like Mg2+ transporter protein | 9.5E-23 | 366 | 559 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|Q9WZ31|CORA_THEMA | Magnesium transport protein CorA OS=Thermotoga maritima (strain ATCC 43589 / MSB8 / DSM 3109 / JCM 10099) GN=corA PE=1 SV=1 | 320 | 559 | 1.0E-18 |
| sp|O31543|YFJQ_BACSU | Putative metal ion transporter YfjQ OS=Bacillus subtilis (strain 168) GN=yfjQ PE=3 SV=1 | 284 | 570 | 1.0E-08 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0016020 | membrane | Yes |
| GO:0046873 | metal ion transmembrane transporter activity | Yes |
| GO:0030001 | metal ion transport | Yes |
| GO:0055085 | transmembrane transport | Yes |
| GO:0015075 | ion transmembrane transporter activity | No |
| GO:0008150 | biological_process | No |
| GO:0051234 | establishment of localization | No |
| GO:0006810 | transport | No |
| GO:0051179 | localization | No |
| GO:0003674 | molecular_function | No |
| GO:0005215 | transporter activity | No |
| GO:0022890 | inorganic cation transmembrane transporter activity | No |
| GO:0022857 | transmembrane transporter activity | No |
| GO:0110165 | cellular anatomical entity | No |
| GO:0009987 | cellular process | No |
| GO:0005575 | cellular_component | No |
| GO:0008324 | cation transmembrane transporter activity | No |
| GO:0006811 | ion transport | No |
| GO:0006812 | cation transport | No |
| GO:0015318 | inorganic molecular entity transmembrane transporter activity | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 22 | 0.45 |
| Domain # | Start | End | Length |
|---|---|---|---|
| 1 | 509 | 531 | 22 |
| 2 | 541 | 560 | 19 |
Expression values
| Label | Description | Expression (RPKM) | Confidence interval (low) | Confidence interval (high) |
|---|---|---|---|---|
| SC16a | Pure fungal culture | 14.46 | 6.54 | 22.38 |
| CcL | In ants, during behavior modification | 24.89 | 12.48 | 37.30 |
| CcD | In ants, recently dead | 19.91 | 9.66 | 30.17 |
Differential expression
| Label1 | Label2 | Q-value | Significant difference |
|---|---|---|---|
| SC16a | CcL | 0.033403 | yes |
| SC16a | CcD | 0.233050 | no |
| CcL | CcD | 0.390297 | no |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Ophio5|2719 MEDQVQAAAASSSSTPGRLSGTAFPPGRMGSTASTIGHLSPGKKRSPLSDTDLRRSKSRRRGSLGIAAMFRTVDD CSELLLDDDSAPPGWQPGAEPGYDPELPDGGHASMPTLSARCNITVIDFSPDRMVQRHFDNEAFIAFLEKPQDKW ATCRWINVNGLSWDVIQAVGSKKGLHKLALEDVMNLRNRTKADWYPSHAYIVLTLLKLVHLVDRSDHSSSSDDAQ DTDPDPSLLRRLFRRGHRALRRRRDRTRSPTTPDTEPDGVRAAEKGAIDYGSLTTTTTTARSLPRSLHRFHASGS EARTSLMERESPLGPRNMAVAAEQVSIFLTGDNTAVSFFETSAADVERPIVTRLSTAGTILRASCDASLLVQALL DAIVDLALPLTTVYSDLLGDLELDVLTAPSIRQSRSLYLCIAEINKMLRFLQPVDGLVNALRDHRSPNRAGRQLG DPAAESVIVSSVTCTYLGDVLDHCIVICDALQQLKQSSEDLIGLIFNTISATQNESMRQLTTVTIIFLPLTFITG FFGQNFNNFPELHHGIWYFWACAVPTAVATVLILMHDMIYSWFVRLFRRKRILSLRRARAAPWPKRRRKLSTSRQ |
| Coding | >Ophio5|2719 ATGGAGGACCAAGTCCAAGCGGCGGCAGCGTCGTCGTCGTCTACGCCCGGACGCTTGAGCGGCACCGCTTTCCCC CCGGGACGCATGGGCAGCACCGCCTCGACAATCGGCCATCTATCACCTGGCAAGAAGCGCAGCCCGCTCTCCGAC ACGGATCTCCGACGATCCAAGTCCAGGAGAAGAGGGAGCCTCGGGATCGCTGCCATGTTCCGCACCGTCGACGAT TGCAGTGAGCTGCTGCTGGATGATGATTCCGCTCCGCCGGGCTGGCAGCCTGGTGCTGAACCGGGTTACGATCCT GAACTGCCGGATGGCGGTCATGCTTCGATGCCGACGCTCAGTGCTCGCTGTAACATCACCGTCATTGACTTTTCG CCTGATCGCATGGTGCAGCGACATTTCGATAATGAGGCTTTTATCGCCTTTCTCGAGAAGCCGCAGGACAAGTGG GCTACTTGTAGATGGATCAACGTCAATGGCTTGAGTTGGGATGTCATTCAGGCGGTTGGCTCGAAAAAGGGGCTT CACAAGCTTGCGCTCGAAGACGTCATGAACTTGCGAAACCGCACCAAAGCAGACTGGTATCCGAGCCACGCCTAC ATCGTCCTCACCCTCCTCAAGCTCGTCCACCTCGTCGACCGCTCCGACCACAGCTCCAGCTCCGACGACGCCCAA GACACTGACCCAGACCCAAGCCTCCTCCGACGGCTCTTTCGACGAGGTCATCGCGCTCTCCGCAGACGACGGGAC CGGACCCGCAGTCCAACCACCCCCGATACCGAGCCCGATGGCGTCCGGGCGGCGGAAAAGGGGGCAATCGATTAC GGCTCTCTCACGACGACGACGACGACGGCTAGGTCGTTGCCTAGGTCGTTGCATCGCTTTCATGCTTCGGGTAGT GAGGCCCGTACTTCACTCATGGAGCGCGAGTCGCCTCTCGGGCCCAGAAACATGGCCGTCGCCGCGGAGCAGGTC TCCATCTTCCTTACCGGCGACAACACGGCCGTCTCCTTCTTCGAGACGTCGGCTGCTGACGTGGAGAGGCCGATC GTTACGCGTCTGAGTACAGCGGGCACCATTCTTCGCGCATCGTGCGATGCCTCGCTTCTCGTTCAGGCCCTTCTC GATGCCATCGTCGACCTCGCCTTACCCCTGACGACCGTCTACTCCGACCTCCTGGGCGATCTCGAGCTCGACGTG CTGACGGCGCCCTCCATCCGGCAGAGTCGATCGCTCTATCTTTGCATCGCCGAGATCAACAAGATGCTACGCTTC CTCCAGCCCGTCGACGGTCTGGTAAACGCCCTGCGCGATCATCGGTCGCCGAACCGTGCCGGTCGTCAGCTCGGT GATCCGGCCGCCGAGAGTGTCATCGTCTCCTCTGTCACCTGCACCTATCTGGGCGACGTCCTCGATCACTGCATC GTCATCTGCGATGCCCTGCAGCAGCTGAAGCAGTCGAGCGAGGATCTCATCGGCCTCATCTTCAACACCATTTCC GCCACCCAGAACGAGTCGATGCGCCAGCTCACCACCGTCACCATCATCTTCCTGCCCCTGACCTTCATCACCGGC TTCTTTGGCCAGAACTTCAACAACTTTCCCGAGCTGCACCACGGCATCTGGTACTTCTGGGCCTGTGCCGTGCCG ACGGCCGTGGCCACCGTGCTGATCCTCATGCACGACATGATATACTCGTGGTTTGTCCGTCTGTTCCGCCGCAAG AGGATTCTTAGTCTTCGCCGGGCCAGGGCCGCGCCGTGGCCCAAGAGGAGGCGCAAACTCAGCACATCTCGCCAG |
| Transcript | >Ophio5|2719 ATGGAGGACCAAGTCCAAGCGGCGGCAGCGTCGTCGTCGTCTACGCCCGGACGCTTGAGCGGCACCGCTTTCCCC CCGGGACGCATGGGCAGCACCGCCTCGACAATCGGCCATCTATCACCTGGCAAGAAGCGCAGCCCGCTCTCCGAC ACGGATCTCCGACGATCCAAGTCCAGGAGAAGAGGGAGCCTCGGGATCGCTGCCATGTTCCGCACCGTCGACGAT TGCAGTGAGCTGCTGCTGGATGATGATTCCGCTCCGCCGGGCTGGCAGCCTGGTGCTGAACCGGGTTACGATCCT GAACTGCCGGATGGCGGTCATGCTTCGATGCCGACGCTCAGTGCTCGCTGTAACATCACCGTCATTGACTTTTCG CCTGATCGCATGGTGCAGCGACATTTCGATAATGAGGCTTTTATCGCCTTTCTCGAGAAGCCGCAGGACAAGTGG GCTACTTGTAGATGGATCAACGTCAATGGCTTGAGTTGGGATGTCATTCAGGCGGTTGGCTCGAAAAAGGGGCTT CACAAGCTTGCGCTCGAAGACGTCATGAACTTGCGAAACCGCACCAAAGCAGACTGGTATCCGAGCCACGCCTAC ATCGTCCTCACCCTCCTCAAGCTCGTCCACCTCGTCGACCGCTCCGACCACAGCTCCAGCTCCGACGACGCCCAA GACACTGACCCAGACCCAAGCCTCCTCCGACGGCTCTTTCGACGAGGTCATCGCGCTCTCCGCAGACGACGGGAC CGGACCCGCAGTCCAACCACCCCCGATACCGAGCCCGATGGCGTCCGGGCGGCGGAAAAGGGGGCAATCGATTAC GGCTCTCTCACGACGACGACGACGACGGCTAGGTCGTTGCCTAGGTCGTTGCATCGCTTTCATGCTTCGGGTAGT GAGGCCCGTACTTCACTCATGGAGCGCGAGTCGCCTCTCGGGCCCAGAAACATGGCCGTCGCCGCGGAGCAGGTC TCCATCTTCCTTACCGGCGACAACACGGCCGTCTCCTTCTTCGAGACGTCGGCTGCTGACGTGGAGAGGCCGATC GTTACGCGTCTGAGTACAGCGGGCACCATTCTTCGCGCATCGTGCGATGCCTCGCTTCTCGTTCAGGCCCTTCTC GATGCCATCGTCGACCTCGCCTTACCCCTGACGACCGTCTACTCCGACCTCCTGGGCGATCTCGAGCTCGACGTG CTGACGGCGCCCTCCATCCGGCAGAGTCGATCGCTCTATCTTTGCATCGCCGAGATCAACAAGATGCTACGCTTC CTCCAGCCCGTCGACGGTCTGGTAAACGCCCTGCGCGATCATCGGTCGCCGAACCGTGCCGGTCGTCAGCTCGGT GATCCGGCCGCCGAGAGTGTCATCGTCTCCTCTGTCACCTGCACCTATCTGGGCGACGTCCTCGATCACTGCATC GTCATCTGCGATGCCCTGCAGCAGCTGAAGCAGTCGAGCGAGGATCTCATCGGCCTCATCTTCAACACCATTTCC GCCACCCAGAACGAGTCGATGCGCCAGCTCACCACCGTCACCATCATCTTCCTGCCCCTGACCTTCATCACCGGC TTCTTTGGCCAGAACTTCAACAACTTTCCCGAGCTGCACCACGGCATCTGGTACTTCTGGGCCTGTGCCGTGCCG ACGGCCGTGGCCACCGTGCTGATCCTCATGCACGACATGATATACTCGTGGTTTGTCCGTCTGTTCCGCCGCAAG AGGATTCTTAGTCTTCGCCGGGCCAGGGCCGCGCCGTGGCCCAAGAGGAGGCGCAAACTCAGCACATCTCGCCAG TGA |
| Gene | >Ophio5|2719 ATGGAGGACCAAGTCCAAGCGGCGGCAGCGTCGTCGTCGTCTACGCCCGGACGCTTGAGCGGCACCGCTTTCCCC CCGGGACGCATGGGCAGCACCGCCTCGACAATCGGCCATCTATCACCTGGCAAGAAGCGCAGCCCGCTCTCCGAC ACGGATCTCCGACGATCCAAGTCCAGGAGAAGAGGGAGCCTCGGGATCGCTGCCATGTTCCGCACCGTCGACGAT TGCAGTGAGCTGCTGCTGGATGATGATTCCGCTCCGCCGGGCTGGCAGCCTGGTGCTGAACCGGGTTACGATCCT GAACTGCCGGATGGCGGTCATGCTTCGATGCCGACGCTCAGTGCTCGCTGTAACATCACCGTCATTGACTTTTCG CCTGATCGCATGGTGCAGCGACATTTCGATAATGAGGCTTTTATCGCCTTTCTCGAGAAGCCGCAGGACAAGTGG GCTACTTGTAGATGGATCAACGTCAATGGCTTGAGTTGGGATGTCATTCAGGCGGTTGGCTCGAAAAAGGGGCTT CACAAGCTTGCGCTCGAAGACGTCATGAACTTGCGAAACCGCACCAAAGCAGACTGGTTCGTGCCAAGATGGGAC CGAAATCGAATCGTCTCTTGTTCTCTAACCAAAAAGAAATATATATTTATATATATATTTACATGGCAGGTATCC GAGCCACGCCTACATCGTCCTCACCCTCCTCAAGCTCGTCCACCTCGTCGACCGCTCCGACCACAGCTCCAGCTC CGACGACGCCCAAGACACTGACCCAGACCCAAGCCTCCTCCGACGGCTCTTTCGACGAGGTCATCGCGCTCTCCG CAGACGACGGGACCGGACCCGCAGTCCAACCACCCCCGATACCGAGCCCGATGGCGTCCGGGCGGCGGAAAAGGG GGCAATCGATTACGGCTCTCTCACGACGACGACGACGACGGCTAGGTCGTTGCCTAGGTCGTTGCATCGCTTTCA TGCTTCGGGTAGTGAGGCCCGTACTTCACTCATGGAGCGCGAGTCGCCTCTCGGGCCCAGAAACATGGCCGTCGC CGCGGAGCAGGTCTCCATCTTCCTTACCGGCGACAACACGGCCGTCTCCTTCTTCGAGACGTCGGCTGCTGACGT GGAGAGGCCGATCGTTACGCGTCTGAGTACAGCGGGCACCATTCTTCGCGCATCGTGCGATGCCTCGCTTCTCGT TCAGGCCCTTCTCGATGCCATCGTCGACCTCGCCTTACCCCTGACGACCGTCTACTCCGACCTCCTGGGCGATCT CGAGCTCGACGTGCTGACGGCGCCCTCCATCCGGCAGAGTCGATCGCTCTATCTTTGCATCGCCGAGATCAACAA GATGCTACGCTTCCTCCAGCCCGTCGACGGTCTGGTAAACGCCCTGCGCGATCATCGGTCGCCGAACCGTGCCGG TCGTCAGCTCGGTGATCCGGCCGCCGAGAGTGTCATCGTCTCCTCTGTCACCTGCACCTATCTGGGCGACGTCCT CGATCACTGCATCGTCATCTGCGATGCCCTGCAGCAGCTGAAGCAGTCGAGCGAGGATCTCATCGGCCTCATCTT CAACACCATTTCCGCCACCCAGAACGAGTCGATGCGCCAGCTCACCACCGTCACCATCATCTTCCTGCCCCTGAC CTTCATCACCGGCTTCTTTGGCCAGAACTTCAACAACTTTCCCGAGCTGCACCACGGCATCTGGTACTTGTAAGT TGACCCTACCCCTGCCCCCTGCCCTCCATCTCTTCTCGGTCCCTGACCCCCTGACCCCCTAGCTGGGCCTGTGCC GTGCCGACGGCCGTGGCCACCGTGCTGATCCTCATGCACGACATGATATACTCGTGGTTTGTCCGTCTGTTCCGC CGCAAGAGGATTCTTAGTCTTCGCCGGGCCAGGGCCGCGCCGTGGCCCAAGAGGAGGCGCAAACTCAGCACATCT CGCCAGTGA |