Fungal Genomics

at Utrecht University

General Properties

Protein IDOphio5|2711
Gene name
Locationscaffold_22:385..1422
Strand+
Gene length (bp)1037
Transcript length (bp)942
Coding sequence length (bp)939
Protein length (aa) 313

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PFAM Domains

(None)

Swissprot hits

(None)

GO

(None)

SignalP

[Help with interpreting these statistics]
SignalP signal predicted Location
(based on Ymax)
D score
(significance: > 0.45)
No 1 - 70 0.45

Transmembrane Domains

Domain # Start End Length
1 155 177 22

Transcription Factor Class

(None)

Expression data

Analysis 1: Expression analysis during behavioral modification. Published in De Bekker et al., 2017.

Expression values

Label Description Expression (RPKM) Confidence interval (low) Confidence interval (high)
SC16a Pure fungal culture 0.75 0.0 1.73
CcL In ants, during behavior modification 0.36 0.0 1.00
CcD In ants, recently dead 0.17 0.0 0.62

Differential expression

Label1 Label2 Q-value Significant difference
SC16a CcL 1.0 no
SC16a CcD 1.0 no
CcL CcD 1.0 no

Sequences

Type of sequenceSequence
Locus Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein >Ophio5|2711
MACLHQAQFCDASRRCGPLASFVDAAAGAATLFNSTPQVAMPENLVKPEGPTASRFVWFIVSIVQGASSLASSVS
SLQSATLQSKQYLYGGVVLDVLRHQWKSDVAHWYASMLASIQETFVSTASKPTDPDLEQYLVRPKNPYAQEMCDN
QFASFSLFGLYLTYLIGLFIIASSHAVEPILAILARRRRKNGHAAYTYLEWTANETLQLQRAAYQGIRSGTWTGF
TKEVPKTKKGETLLHLTSLHTRTNGCGAEPASKATDGPQPPYSEHQRAPSCRGDVNSEPGEPIETESGLEISMTG
STATIRDEPTPRQ
Coding >Ophio5|2711
ATGGCCTGTCTTCACCAAGCCCAGTTCTGCGACGCCTCTCGCCGCTGTGGACCGCTGGCTAGTTTCGTAGATGCC
GCTGCCGGCGCCGCCACGCTCTTCAACTCGACGCCCCAAGTGGCCATGCCGGAGAACCTTGTCAAGCCGGAAGGG
CCCACAGCCAGCCGCTTCGTCTGGTTCATCGTCTCCATCGTACAGGGCGCTTCCTCGTTGGCCTCGAGCGTCTCC
AGCCTCCAGAGCGCCACTCTGCAGTCCAAGCAGTATCTGTATGGGGGCGTCGTCCTCGACGTCTTGCGCCATCAA
TGGAAGAGCGATGTGGCCCATTGGTATGCGTCGATGCTGGCATCTATCCAGGAGACGTTCGTTTCCACGGCATCC
AAGCCGACGGATCCAGATCTCGAGCAATATCTCGTCCGTCCAAAGAATCCTTACGCTCAGGAAATGTGTGACAAC
CAGTTCGCATCATTCAGCCTCTTTGGGCTCTACCTGACCTATCTAATCGGACTTTTCATCATAGCATCTTCACAC
GCTGTCGAGCCCATCTTGGCCATCTTGGCACGCCGCCGTAGGAAGAACGGCCATGCAGCTTATACCTATCTGGAG
TGGACCGCAAACGAGACGCTTCAGCTGCAACGGGCCGCTTACCAGGGCATCCGATCAGGCACCTGGACGGGCTTT
ACCAAAGAGGTTCCCAAGACCAAAAAGGGCGAGACTCTGTTGCATCTCACCAGTCTTCACACACGTACAAATGGC
TGTGGCGCCGAGCCAGCCTCCAAGGCTACCGATGGTCCCCAACCTCCATACTCTGAACACCAGCGAGCTCCTTCG
TGTCGTGGAGACGTGAATTCGGAACCAGGAGAGCCCATCGAGACGGAAAGCGGGCTCGAAATTTCCATGACCGGC
AGTACAGCCACTATAAGAGATGAGCCTACGCCACGGCAG
Transcript >Ophio5|2711
ATGGCCTGTCTTCACCAAGCCCAGTTCTGCGACGCCTCTCGCCGCTGTGGACCGCTGGCTAGTTTCGTAGATGCC
GCTGCCGGCGCCGCCACGCTCTTCAACTCGACGCCCCAAGTGGCCATGCCGGAGAACCTTGTCAAGCCGGAAGGG
CCCACAGCCAGCCGCTTCGTCTGGTTCATCGTCTCCATCGTACAGGGCGCTTCCTCGTTGGCCTCGAGCGTCTCC
AGCCTCCAGAGCGCCACTCTGCAGTCCAAGCAGTATCTGTATGGGGGCGTCGTCCTCGACGTCTTGCGCCATCAA
TGGAAGAGCGATGTGGCCCATTGGTATGCGTCGATGCTGGCATCTATCCAGGAGACGTTCGTTTCCACGGCATCC
AAGCCGACGGATCCAGATCTCGAGCAATATCTCGTCCGTCCAAAGAATCCTTACGCTCAGGAAATGTGTGACAAC
CAGTTCGCATCATTCAGCCTCTTTGGGCTCTACCTGACCTATCTAATCGGACTTTTCATCATAGCATCTTCACAC
GCTGTCGAGCCCATCTTGGCCATCTTGGCACGCCGCCGTAGGAAGAACGGCCATGCAGCTTATACCTATCTGGAG
TGGACCGCAAACGAGACGCTTCAGCTGCAACGGGCCGCTTACCAGGGCATCCGATCAGGCACCTGGACGGGCTTT
ACCAAAGAGGTTCCCAAGACCAAAAAGGGCGAGACTCTGTTGCATCTCACCAGTCTTCACACACGTACAAATGGC
TGTGGCGCCGAGCCAGCCTCCAAGGCTACCGATGGTCCCCAACCTCCATACTCTGAACACCAGCGAGCTCCTTCG
TGTCGTGGAGACGTGAATTCGGAACCAGGAGAGCCCATCGAGACGGAAAGCGGGCTCGAAATTTCCATGACCGGC
AGTACAGCCACTATAAGAGATGAGCCTACGCCACGGCAGTAG
Gene >Ophio5|2711
ATGGCCTGTCTTCACCAAGCCCAGTTCTGCGACGCCTCTCGCCGCTGTGGACCGCTGGCTAGTTTCGTAGATGCC
GCTGCCGGCGCCGCCACGCTCTTCAACTCGACGCCCCAAGTGGCCATGCCGGAGAACCTTGTCAAGCCGGAAGGG
CCCACAGCCAGCCGCTTCGTCTGGTTCATCGTCTCCATCGTACAGGGCGCTTCCTCGTTGGCCTCGAGCGTCTCC
AGCCTCCAGAGCGCCACTCTGCAGTCCAAGCAGTATCTGTATGGGGGCGTCGTCCTCGACGTCTTGCGCCATCAA
TGGAAGAGCGATGTGGCCCATTGGTATGCGTCGATGCTGGCATCTATCCAGGAGACGTTCGTTTCCACGGCATCC
AAGCCGACGGATCCAGATCTCGAGCAATATCTCGTCCGTCCAAAGAATCCTTACGCTCAGGAAATGTGTGACAAC
CAGGTAGGCTTTTACCTTGTTGGGTCTTATCGTCGTCTAATAGCCACCGTTACTGATCAAAAGACCCCGTCTTGA
TGCAGAAAATCCTCAGCTCCCAGTTCGCATCATTCAGCCTCTTTGGGCTCTACCTGACCTATCTAATCGGACTTT
TCATCATAGCATCTTCACACGCTGTCGAGCCCATCTTGGCCATCTTGGCACGCCGCCGTAGGAAGAACGGCCATG
CAGCTTATACCTATCTGGAGTGGACCGCAAACGAGACGCTTCAGCTGCAACGGGCCGCTTACCAGGGCATCCGAT
CAGGCACCTGGACGGGCTTTACCAAAGAGGTTCCCAAGACCAAAAAGGGCGAGACTCTGTTGCATCTCACCAGTC
TTCACACACGTACAAATGGCTGTGGCGCCGAGCCAGCCTCCAAGGCTACCGATGGTCCCCAACCTCCATACTCTG
AACACCAGCGAGCTCCTTCGTGTCGTGGAGACGTGAATTCGGAACCAGGAGAGCCCATCGAGACGGAAAGCGGGC
TCGAAATTTCCATGACCGGCAGTACAGCCACTATAAGAGATGAGCCTACGCCACGGCAGTAG

© 2022 - Robin Ohm - Utrecht University - The Netherlands

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