Fungal Genomics

at Utrecht University

General Properties

Protein IDOphio5|27
Gene name
Locationscaffold_1:63626..64415
Strand+
Gene length (bp)789
Transcript length (bp)726
Coding sequence length (bp)723
Protein length (aa) 241

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PFAM Domains

(None)

Swissprot hits

(None)

GO

(None)

SignalP

[Help with interpreting these statistics]
SignalP signal predicted Location
(based on Ymax)
D score
(significance: > 0.45)
Yes 1 - 21 0.45

Transmembrane Domains

(None)

Transcription Factor Class

(None)

Expression data

Analysis 1: Expression analysis during behavioral modification. Published in De Bekker et al., 2017.

Expression values

Label Description Expression (RPKM) Confidence interval (low) Confidence interval (high)
SC16a Pure fungal culture 0.18 0.0 0.63
CcL In ants, during behavior modification 2.48 0.0 5.09
CcD In ants, recently dead 0.91 0.0 2.11

Differential expression

Label1 Label2 Q-value Significant difference
SC16a CcL 0.370736 no
SC16a CcD 1.000000 no
CcL CcD 0.110467 no

Sequences

Type of sequenceSequence
Locus Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein >Ophio5|27
MVRLAAAAALAFAVTAHAAAVDVRSIGAVGANHLDVRGLVLEKRRKGKEEKVAPAAPAAPAAAAPAAAAPAAAAP
AAAAPNPVGENPVAPSSSGAPGDITNQMQQLVKQLEDSKSQDQKTRDQQIGQSLTDEKQMLSDDQQKQGQAIDEK
IRKMSTLTGDDAQKLSDEIRQDIQNFESGLTDEQKQKAQATDQLIADAKNGLTDDQKNIIAQIDQLQSQLPAQGQ
APAQAPAEAAPPPAAK
Coding >Ophio5|27
ATGGTTCGCCTTGCTGCCGCCGCCGCTCTGGCTTTTGCCGTTACCGCTCACGCGGCCGCCGTTGACGTGAGAAGC
ATTGGTGCCGTTGGCGCCAATCATCTCGATGTCCGCGGTCTAGTTCTCGAGAAGAGAAGGAAGGGCAAAGAAGAG
AAAGTAGCCCCTGCGGCCCCGGCTGCTCCGGCTGCTGCTGCTCCGGCTGCTGCTGCTCCGGCTGCTGCGGCCCCG
GCTGCTGCTGCCCCGAACCCAGTGGGCGAGAATCCGGTCGCGCCGAGCTCGTCAGGGGCACCCGGTGACATCACC
AATCAGATGCAGCAGCTGGTGAAGCAGCTGGAGGACTCCAAATCCCAAGACCAGAAGACCAGGGATCAGCAGATT
GGCCAGAGTCTTACCGATGAAAAGCAGATGCTCTCAGACGACCAGCAAAAGCAGGGCCAGGCCATCGACGAGAAG
ATTCGGAAAATGAGTACCTTGACGGGCGATGACGCTCAGAAACTCAGTGACGAAATCAGACAAGACATTCAGAAC
TTTGAGAGCGGACTCACCGACGAGCAGAAGCAAAAGGCACAGGCAACCGACCAGCTGATCGCAGATGCCAAGAAT
GGCCTCACTGATGATCAGAAGAACATCATTGCCCAGATTGACCAGCTACAGAGTCAGCTACCTGCTCAGGGTCAG
GCTCCGGCACAGGCTCCGGCTGAGGCCGCACCACCGCCCGCGGCGAAG
Transcript >Ophio5|27
ATGGTTCGCCTTGCTGCCGCCGCCGCTCTGGCTTTTGCCGTTACCGCTCACGCGGCCGCCGTTGACGTGAGAAGC
ATTGGTGCCGTTGGCGCCAATCATCTCGATGTCCGCGGTCTAGTTCTCGAGAAGAGAAGGAAGGGCAAAGAAGAG
AAAGTAGCCCCTGCGGCCCCGGCTGCTCCGGCTGCTGCTGCTCCGGCTGCTGCTGCTCCGGCTGCTGCGGCCCCG
GCTGCTGCTGCCCCGAACCCAGTGGGCGAGAATCCGGTCGCGCCGAGCTCGTCAGGGGCACCCGGTGACATCACC
AATCAGATGCAGCAGCTGGTGAAGCAGCTGGAGGACTCCAAATCCCAAGACCAGAAGACCAGGGATCAGCAGATT
GGCCAGAGTCTTACCGATGAAAAGCAGATGCTCTCAGACGACCAGCAAAAGCAGGGCCAGGCCATCGACGAGAAG
ATTCGGAAAATGAGTACCTTGACGGGCGATGACGCTCAGAAACTCAGTGACGAAATCAGACAAGACATTCAGAAC
TTTGAGAGCGGACTCACCGACGAGCAGAAGCAAAAGGCACAGGCAACCGACCAGCTGATCGCAGATGCCAAGAAT
GGCCTCACTGATGATCAGAAGAACATCATTGCCCAGATTGACCAGCTACAGAGTCAGCTACCTGCTCAGGGTCAG
GCTCCGGCACAGGCTCCGGCTGAGGCCGCACCACCGCCCGCGGCGAAGTAG
Gene >Ophio5|27
ATGGTTCGCCTTGCTGCCGCCGCCGCTCTGGCTTGTACGTTGTCCATGACCACCTCTTTGCCCCCCGCCTCATCG
CCCAGCTAACTCTTGTCGTCAGTTGCCGTTACCGCTCACGCGGCCGCCGTTGACGTGAGAAGCATTGGTGCCGTT
GGCGCCAATCATCTCGATGTCCGCGGTCTAGTTCTCGAGAAGAGAAGGAAGGGCAAAGAAGAGAAAGTAGCCCCT
GCGGCCCCGGCTGCTCCGGCTGCTGCTGCTCCGGCTGCTGCTGCTCCGGCTGCTGCGGCCCCGGCTGCTGCTGCC
CCGAACCCAGTGGGCGAGAATCCGGTCGCGCCGAGCTCGTCAGGGGCACCCGGTGACATCACCAATCAGATGCAG
CAGCTGGTGAAGCAGCTGGAGGACTCCAAATCCCAAGACCAGAAGACCAGGGATCAGCAGATTGGCCAGAGTCTT
ACCGATGAAAAGCAGATGCTCTCAGACGACCAGCAAAAGCAGGGCCAGGCCATCGACGAGAAGATTCGGAAAATG
AGTACCTTGACGGGCGATGACGCTCAGAAACTCAGTGACGAAATCAGACAAGACATTCAGAACTTTGAGAGCGGA
CTCACCGACGAGCAGAAGCAAAAGGCACAGGCAACCGACCAGCTGATCGCAGATGCCAAGAATGGCCTCACTGAT
GATCAGAAGAACATCATTGCCCAGATTGACCAGCTACAGAGTCAGCTACCTGCTCAGGGTCAGGCTCCGGCACAG
GCTCCGGCTGAGGCCGCACCACCGCCCGCGGCGAAGTAG

© 2022 - Robin Ohm - Utrecht University - The Netherlands

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