© 2022 - Robin Ohm - Utrecht University - The Netherlands
Built with Python Django and Wagtail
| Protein ID | Ophio5|27 |
| Gene name | |
| Location | scaffold_1:63626..64415 |
| Strand | + |
| Gene length (bp) | 789 |
| Transcript length (bp) | 726 |
| Coding sequence length (bp) | 723 |
| Protein length (aa) | 241 |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| Yes | 1 - 21 | 0.45 |
Expression values
| Label | Description | Expression (RPKM) | Confidence interval (low) | Confidence interval (high) |
|---|---|---|---|---|
| SC16a | Pure fungal culture | 0.18 | 0.0 | 0.63 |
| CcL | In ants, during behavior modification | 2.48 | 0.0 | 5.09 |
| CcD | In ants, recently dead | 0.91 | 0.0 | 2.11 |
Differential expression
| Label1 | Label2 | Q-value | Significant difference |
|---|---|---|---|
| SC16a | CcL | 0.370736 | no |
| SC16a | CcD | 1.000000 | no |
| CcL | CcD | 0.110467 | no |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Ophio5|27 MVRLAAAAALAFAVTAHAAAVDVRSIGAVGANHLDVRGLVLEKRRKGKEEKVAPAAPAAPAAAAPAAAAPAAAAP AAAAPNPVGENPVAPSSSGAPGDITNQMQQLVKQLEDSKSQDQKTRDQQIGQSLTDEKQMLSDDQQKQGQAIDEK IRKMSTLTGDDAQKLSDEIRQDIQNFESGLTDEQKQKAQATDQLIADAKNGLTDDQKNIIAQIDQLQSQLPAQGQ APAQAPAEAAPPPAAK |
| Coding | >Ophio5|27 ATGGTTCGCCTTGCTGCCGCCGCCGCTCTGGCTTTTGCCGTTACCGCTCACGCGGCCGCCGTTGACGTGAGAAGC ATTGGTGCCGTTGGCGCCAATCATCTCGATGTCCGCGGTCTAGTTCTCGAGAAGAGAAGGAAGGGCAAAGAAGAG AAAGTAGCCCCTGCGGCCCCGGCTGCTCCGGCTGCTGCTGCTCCGGCTGCTGCTGCTCCGGCTGCTGCGGCCCCG GCTGCTGCTGCCCCGAACCCAGTGGGCGAGAATCCGGTCGCGCCGAGCTCGTCAGGGGCACCCGGTGACATCACC AATCAGATGCAGCAGCTGGTGAAGCAGCTGGAGGACTCCAAATCCCAAGACCAGAAGACCAGGGATCAGCAGATT GGCCAGAGTCTTACCGATGAAAAGCAGATGCTCTCAGACGACCAGCAAAAGCAGGGCCAGGCCATCGACGAGAAG ATTCGGAAAATGAGTACCTTGACGGGCGATGACGCTCAGAAACTCAGTGACGAAATCAGACAAGACATTCAGAAC TTTGAGAGCGGACTCACCGACGAGCAGAAGCAAAAGGCACAGGCAACCGACCAGCTGATCGCAGATGCCAAGAAT GGCCTCACTGATGATCAGAAGAACATCATTGCCCAGATTGACCAGCTACAGAGTCAGCTACCTGCTCAGGGTCAG GCTCCGGCACAGGCTCCGGCTGAGGCCGCACCACCGCCCGCGGCGAAG |
| Transcript | >Ophio5|27 ATGGTTCGCCTTGCTGCCGCCGCCGCTCTGGCTTTTGCCGTTACCGCTCACGCGGCCGCCGTTGACGTGAGAAGC ATTGGTGCCGTTGGCGCCAATCATCTCGATGTCCGCGGTCTAGTTCTCGAGAAGAGAAGGAAGGGCAAAGAAGAG AAAGTAGCCCCTGCGGCCCCGGCTGCTCCGGCTGCTGCTGCTCCGGCTGCTGCTGCTCCGGCTGCTGCGGCCCCG GCTGCTGCTGCCCCGAACCCAGTGGGCGAGAATCCGGTCGCGCCGAGCTCGTCAGGGGCACCCGGTGACATCACC AATCAGATGCAGCAGCTGGTGAAGCAGCTGGAGGACTCCAAATCCCAAGACCAGAAGACCAGGGATCAGCAGATT GGCCAGAGTCTTACCGATGAAAAGCAGATGCTCTCAGACGACCAGCAAAAGCAGGGCCAGGCCATCGACGAGAAG ATTCGGAAAATGAGTACCTTGACGGGCGATGACGCTCAGAAACTCAGTGACGAAATCAGACAAGACATTCAGAAC TTTGAGAGCGGACTCACCGACGAGCAGAAGCAAAAGGCACAGGCAACCGACCAGCTGATCGCAGATGCCAAGAAT GGCCTCACTGATGATCAGAAGAACATCATTGCCCAGATTGACCAGCTACAGAGTCAGCTACCTGCTCAGGGTCAG GCTCCGGCACAGGCTCCGGCTGAGGCCGCACCACCGCCCGCGGCGAAGTAG |
| Gene | >Ophio5|27 ATGGTTCGCCTTGCTGCCGCCGCCGCTCTGGCTTGTACGTTGTCCATGACCACCTCTTTGCCCCCCGCCTCATCG CCCAGCTAACTCTTGTCGTCAGTTGCCGTTACCGCTCACGCGGCCGCCGTTGACGTGAGAAGCATTGGTGCCGTT GGCGCCAATCATCTCGATGTCCGCGGTCTAGTTCTCGAGAAGAGAAGGAAGGGCAAAGAAGAGAAAGTAGCCCCT GCGGCCCCGGCTGCTCCGGCTGCTGCTGCTCCGGCTGCTGCTGCTCCGGCTGCTGCGGCCCCGGCTGCTGCTGCC CCGAACCCAGTGGGCGAGAATCCGGTCGCGCCGAGCTCGTCAGGGGCACCCGGTGACATCACCAATCAGATGCAG CAGCTGGTGAAGCAGCTGGAGGACTCCAAATCCCAAGACCAGAAGACCAGGGATCAGCAGATTGGCCAGAGTCTT ACCGATGAAAAGCAGATGCTCTCAGACGACCAGCAAAAGCAGGGCCAGGCCATCGACGAGAAGATTCGGAAAATG AGTACCTTGACGGGCGATGACGCTCAGAAACTCAGTGACGAAATCAGACAAGACATTCAGAACTTTGAGAGCGGA CTCACCGACGAGCAGAAGCAAAAGGCACAGGCAACCGACCAGCTGATCGCAGATGCCAAGAATGGCCTCACTGAT GATCAGAAGAACATCATTGCCCAGATTGACCAGCTACAGAGTCAGCTACCTGCTCAGGGTCAGGCTCCGGCACAG GCTCCGGCTGAGGCCGCACCACCGCCCGCGGCGAAGTAG |