© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Ophio5|2678 |
| Gene name | |
| Location | scaffold_217:9226..10578 |
| Strand | - |
| Gene length (bp) | 1352 |
| Transcript length (bp) | 1083 |
| Coding sequence length (bp) | 1080 |
| Protein length (aa) | 360 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF01758 | SBF | Sodium Bile acid symporter family | 1.7E-34 | 86 | 262 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|Q8NQC8|ACR3_CORGL | Arsenical-resistance protein Acr3 OS=Corynebacterium glutamicum (strain ATCC 13032 / DSM 20300 / JCM 1318 / LMG 3730 / NCIMB 10025) GN=acr3 PE=1 SV=2 | 25 | 356 | 2.0E-89 |
| sp|P45946|ARSB_BACSU | Arsenite resistance protein ArsB OS=Bacillus subtilis (strain 168) GN=arsB PE=3 SV=2 | 39 | 347 | 1.0E-72 |
| sp|Q06598|ARR3_YEAST | Arsenical-resistance protein 3 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=ARR3 PE=1 SV=1 | 18 | 360 | 3.0E-70 |
| sp|P74311|Y944_SYNY3 | Uncharacterized transporter slr0944 OS=Synechocystis sp. (strain PCC 6803 / Kazusa) GN=slr0944 PE=3 SV=1 | 32 | 347 | 1.0E-40 |
| sp|A6TP80|ACR3_ALKMQ | Arsenical-resistance protein Acr3 OS=Alkaliphilus metalliredigens (strain QYMF) GN=acr3 PE=1 SV=1 | 39 | 332 | 2.0E-29 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0016020 | membrane | Yes |
| GO:0110165 | cellular anatomical entity | No |
| GO:0005575 | cellular_component | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 19 | 0.5 |
| Domain # | Start | End | Length |
|---|---|---|---|
| 1 | 47 | 66 | 19 |
| 2 | 76 | 98 | 22 |
| 3 | 118 | 140 | 22 |
| 4 | 160 | 182 | 22 |
| 5 | 195 | 217 | 22 |
| 6 | 232 | 254 | 22 |
| 7 | 267 | 289 | 22 |
| 8 | 328 | 350 | 22 |
Expression values
| Label | Description | Expression (RPKM) | Confidence interval (low) | Confidence interval (high) |
|---|---|---|---|---|
| SC16a | Pure fungal culture | 2.67 | 0.37 | 4.96 |
| CcL | In ants, during behavior modification | 12.17 | 3.60 | 20.73 |
| CcD | In ants, recently dead | 8.94 | 2.90 | 14.99 |
Differential expression
| Label1 | Label2 | Q-value | Significant difference |
|---|---|---|---|
| SC16a | CcL | 0.000535 | yes |
| SC16a | CcD | 0.002047 | yes |
| CcL | CcD | 0.393068 | no |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Ophio5|2678 MHPAGLSTVLEEVGSSRADGENPENSASNRARVSQSAFKHLGLLDRFLPLCIFLAMAIGIILANLVPEAGPSLQR GRFVGVSVPIAVGLLVMMYPILCRVRYESLHQLLSRRTMWKQIAFSLFVNWIVAPFLMLALAWAFLPDKSALRTG LILVGLGRCIAMVLIWNGMVLFAPLAVFFLRVISGELGTTLGIPYEVVATSVAVFLGIPLGAAVVTRFVLRAVAG GDWYQRVFLRFASPWSLIGLLYTILILFASQGRQVVHQIVSVLRVAAPLMVYFVLIFFLTLCISRLLGFKFPFLV AQSFTAASNNLELAIAVAIATFDPDSDQALASTVGPLIEVPVLMGLVYAVRCMATRWRWN |
| Coding | >Ophio5|2678 ATGCACCCCGCTGGCCTCTCTACGGTGCTGGAGGAAGTAGGCAGCAGCCGAGCAGACGGAGAGAATCCGGAAAAC TCGGCAAGCAATAGAGCCCGCGTGTCACAGTCTGCGTTCAAGCACTTGGGTCTTCTCGACCGTTTTCTGCCGCTG TGCATCTTCTTAGCCATGGCCATCGGCATCATTCTCGCCAACTTGGTCCCGGAAGCGGGCCCTTCCCTGCAGAGG GGTCGATTCGTCGGAGTCTCGGTGCCCATTGCCGTTGGTCTGCTCGTCATGATGTATCCGATCCTATGCAGGGTG CGCTATGAATCGCTGCACCAACTCCTTTCGCGGAGGACAATGTGGAAGCAGATAGCCTTCAGTCTATTCGTCAAC TGGATCGTTGCCCCTTTTCTCATGCTTGCCCTGGCCTGGGCATTTCTTCCGGACAAGAGTGCCCTTCGCACCGGA CTTATACTCGTCGGACTGGGAAGGTGTATTGCCATGGTGCTTATCTGGAACGGGATGGTGCTTTTTGCCCCGCTT GCTGTCTTCTTCCTCCGCGTCATCAGCGGCGAGTTGGGTACTACGCTTGGCATCCCCTACGAGGTTGTCGCCACC AGTGTAGCAGTCTTTCTCGGCATCCCATTGGGGGCGGCCGTTGTGACGCGGTTTGTGCTCCGCGCGGTGGCAGGA GGTGATTGGTATCAGCGCGTCTTCCTCCGCTTCGCGTCGCCGTGGTCGCTCATTGGCCTGCTGTACACCATTCTC ATTCTCTTCGCCTCCCAAGGCCGCCAGGTTGTACACCAGATCGTATCGGTGCTTCGAGTCGCTGCGCCGCTGATG GTGTACTTTGTGCTTATATTCTTTCTGACCCTTTGCATCAGCCGCCTTCTCGGCTTCAAGTTTCCTTTTCTCGTG GCACAGAGTTTCACCGCTGCCAGCAATAACTTGGAACTGGCTATCGCGGTGGCCATAGCGACCTTCGACCCCGAT AGCGACCAGGCACTGGCATCTACCGTCGGTCCGCTGATTGAGGTTCCCGTGCTGATGGGCTTGGTATACGCCGTT CGATGCATGGCAACTAGGTGGCGGTGGAAT |
| Transcript | >Ophio5|2678 ATGCACCCCGCTGGCCTCTCTACGGTGCTGGAGGAAGTAGGCAGCAGCCGAGCAGACGGAGAGAATCCGGAAAAC TCGGCAAGCAATAGAGCCCGCGTGTCACAGTCTGCGTTCAAGCACTTGGGTCTTCTCGACCGTTTTCTGCCGCTG TGCATCTTCTTAGCCATGGCCATCGGCATCATTCTCGCCAACTTGGTCCCGGAAGCGGGCCCTTCCCTGCAGAGG GGTCGATTCGTCGGAGTCTCGGTGCCCATTGCCGTTGGTCTGCTCGTCATGATGTATCCGATCCTATGCAGGGTG CGCTATGAATCGCTGCACCAACTCCTTTCGCGGAGGACAATGTGGAAGCAGATAGCCTTCAGTCTATTCGTCAAC TGGATCGTTGCCCCTTTTCTCATGCTTGCCCTGGCCTGGGCATTTCTTCCGGACAAGAGTGCCCTTCGCACCGGA CTTATACTCGTCGGACTGGGAAGGTGTATTGCCATGGTGCTTATCTGGAACGGGATGGTGCTTTTTGCCCCGCTT GCTGTCTTCTTCCTCCGCGTCATCAGCGGCGAGTTGGGTACTACGCTTGGCATCCCCTACGAGGTTGTCGCCACC AGTGTAGCAGTCTTTCTCGGCATCCCATTGGGGGCGGCCGTTGTGACGCGGTTTGTGCTCCGCGCGGTGGCAGGA GGTGATTGGTATCAGCGCGTCTTCCTCCGCTTCGCGTCGCCGTGGTCGCTCATTGGCCTGCTGTACACCATTCTC ATTCTCTTCGCCTCCCAAGGCCGCCAGGTTGTACACCAGATCGTATCGGTGCTTCGAGTCGCTGCGCCGCTGATG GTGTACTTTGTGCTTATATTCTTTCTGACCCTTTGCATCAGCCGCCTTCTCGGCTTCAAGTTTCCTTTTCTCGTG GCACAGAGTTTCACCGCTGCCAGCAATAACTTGGAACTGGCTATCGCGGTGGCCATAGCGACCTTCGACCCCGAT AGCGACCAGGCACTGGCATCTACCGTCGGTCCGCTGATTGAGGTTCCCGTGCTGATGGGCTTGGTATACGCCGTT CGATGCATGGCAACTAGGTGGCGGTGGAATTAG |
| Gene | >Ophio5|2678 ATGCACCCCGCTGGCCTCTCTACGGTGCTGGAGGAAGTAGGCAGCAGCCGAGCAGACGGAGAGAATCCGGAAAAC TCGGCAAGCAATAGAGCCCGCGTGTCACAGTCTGCGTTCAAGCACTTGGGTCTTCTCGACCGTTTTCTGCCGCTG TGCATCTTCTTAGCCATGGCCATCGGCATCATTCTCGCCAACTTGGTCCCGGAAGCGGGCCCTTCCCTGCAGAGG GGTCGATTCGTCGGAGTCTCGGTGCCCATTGGCAAGTTACTGCATCTCGACATCAGAAGGCCTGAAAGGTCTCGC GGAAAAAAGCACGTGTAGGCTAATCCAGTCGTCGTTGATTGCAGCCGTTGGTCTGCTCGTCATGATGTATCCGAT CCTATGCAGGGTGCGCTATGAATCGCTGCACCAACTCCTTTCGCGGAGGACAATGTGGAAGCAGATAGCCTTCAG TCTATTCGTCAACTGGATCGTTGCCCCTTTTCTCATGGTGCGTTGTCCGGACAGTGGCACGGTAGAACCTCGCCG CTCACATTTTGTCCACCTAGCTTGCCCTGGCCTGGGCATTTCTTCCGGACAAGAGTGCCCTTCGCACCGGACTTA TACTCGTCGGACTGGGAAGGTGTATTGCCATGGTTCGTCATCGTCTCCCCTTGTCTGCTCGCCCGTAGTGGAACT ACCAAGGCCGACATAGGAGTGGTGATCTAGGTGCTTATCTGGAACGGGGTGATGACGAATATTGTGCCATTCTCG TGGCCATCAACTCGGTCCTGCAGATGGTGCTTTTTGCCCCGCTTGCTGTCTTCTTCCTCCGCGTCATCAGCGGCG AGTTGGGTACTACGCTTGGCATCCCCTACGAGGTTGTCGCCACCAGTGTAGCAGTCTTTCTCGGCATCCCATTGG GGGCGGCCGTTGTGACGCGGTTTGTGCTCCGCGCGGTGGCAGGAGGTGATTGGTATCAGCGCGTCTTCCTCCGCT TCGCGTCGCCGTGGTCGCTCATTGGCCTGCTGTACACCATTCTCATTCTCTTCGCCTCCCAAGGCCGCCAGGTTG TACACCAGATCGTATCGGTGCTTCGAGTCGCTGCGCCGCTGATGGTGTACTTTGTGCTTATATTCTTTCTGACCC TTTGCATCAGCCGCCTTCTCGGCTTCAAGTTTCCTTTTCTCGTGGCACAGAGTTTCACCGCTGCCAGCAATAACT TGGAACTGGCTATCGCGGTGGCCATAGCGACCTTCGACCCCGATAGCGACCAGGCACTGGCATCTACCGTCGGTC CGCTGATTGAGGTTCCCGTGCTGATGGGCTTGGTATACGCCGTTCGATGCATGGCAACTAGGTGGCGGTGGAATT AG |