© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Ophio5|2669 |
| Gene name | |
| Location | scaffold_216:17679..18063 |
| Strand | + |
| Gene length (bp) | 384 |
| Transcript length (bp) | 384 |
| Coding sequence length (bp) | 381 |
| Protein length (aa) | 127 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF01476 | LysM | LysM domain | 1.5E-07 | 27 | 69 |
| PF01476 | LysM | LysM domain | 1.2E-08 | 80 | 126 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|P39046|MUR2_ENTHA | Muramidase-2 OS=Enterococcus hirae (strain ATCC 9790 / DSM 20160 / JCM 8729 / LMG 6399 / NBRC 3181 / NCIMB 6459 / NCDO 1258) GN=EHR_05900 PE=1 SV=1 | 27 | 126 | 2.0E-07 |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| Yes | 1 - 20 | 0.45 |
Expression values
| Label | Description | Expression (RPKM) | Confidence interval (low) | Confidence interval (high) |
|---|---|---|---|---|
| SC16a | Pure fungal culture | 46.27 | 15.48 | 77.05 |
| CcL | In ants, during behavior modification | 0.91 | 0.00 | 2.38 |
| CcD | In ants, recently dead | 2.10 | 0.00 | 5.11 |
Differential expression
| Label1 | Label2 | Q-value | Significant difference |
|---|---|---|---|
| SC16a | CcL | 0.061678 | no |
| SC16a | CcD | 0.002236 | yes |
| CcL | CcD | 0.385229 | no |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Ophio5|2669 MGILHSLLLAGAFFSTAFAEPDCVEHYTVKPYDSCWKISIEKSVALKNLIAWNQHRGNCALYPGDVLCVAKYKVQ CNRTHMVISNDWCWKIAKDNDIDLNKLVALNPNLVQSIDECNIHPGQQVCVG |
| Coding | >Ophio5|2669 ATGGGCATTCTCCACAGCCTGCTCCTTGCTGGAGCTTTTTTCTCTACCGCTTTTGCCGAGCCTGACTGCGTCGAA CACTATACAGTCAAGCCATACGATTCGTGCTGGAAAATCAGCATTGAAAAATCGGTCGCCCTCAAGAACCTCATT GCCTGGAACCAGCACCGTGGCAACTGCGCTCTGTACCCGGGAGATGTGCTTTGCGTCGCCAAATATAAGGTCCAG TGCAATCGCACTCACATGGTGATAAGCAACGATTGGTGCTGGAAGATAGCGAAAGACAACGACATCGATCTTAAC AAACTAGTCGCGCTCAACCCGAATCTCGTGCAAAGCATCGACGAGTGCAATATCCACCCTGGACAGCAGGTTTGC GTCGGC |
| Transcript | >Ophio5|2669 ATGGGCATTCTCCACAGCCTGCTCCTTGCTGGAGCTTTTTTCTCTACCGCTTTTGCCGAGCCTGACTGCGTCGAA CACTATACAGTCAAGCCATACGATTCGTGCTGGAAAATCAGCATTGAAAAATCGGTCGCCCTCAAGAACCTCATT GCCTGGAACCAGCACCGTGGCAACTGCGCTCTGTACCCGGGAGATGTGCTTTGCGTCGCCAAATATAAGGTCCAG TGCAATCGCACTCACATGGTGATAAGCAACGATTGGTGCTGGAAGATAGCGAAAGACAACGACATCGATCTTAAC AAACTAGTCGCGCTCAACCCGAATCTCGTGCAAAGCATCGACGAGTGCAATATCCACCCTGGACAGCAGGTTTGC GTCGGCTAG |
| Gene | >Ophio5|2669 ATGGGCATTCTCCACAGCCTGCTCCTTGCTGGAGCTTTTTTCTCTACCGCTTTTGCCGAGCCTGACTGCGTCGAA CACTATACAGTCAAGCCATACGATTCGTGCTGGAAAATCAGCATTGAAAAATCGGTCGCCCTCAAGAACCTCATT GCCTGGAACCAGCACCGTGGCAACTGCGCTCTGTACCCGGGAGATGTGCTTTGCGTCGCCAAATATAAGGTCCAG TGCAATCGCACTCACATGGTGATAAGCAACGATTGGTGCTGGAAGATAGCGAAAGACAACGACATCGATCTTAAC AAACTAGTCGCGCTCAACCCGAATCTCGTGCAAAGCATCGACGAGTGCAATATCCACCCTGGACAGCAGGTTTGC GTCGGCTAG |