© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Ophio5|2660 |
| Gene name | |
| Location | scaffold_216:4228..5035 |
| Strand | + |
| Gene length (bp) | 807 |
| Transcript length (bp) | 807 |
| Coding sequence length (bp) | 804 |
| Protein length (aa) | 268 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF17784 | Sulfotransfer_4 | Sulfotransferase domain | 2.5E-62 | 14 | 228 |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 11 | 0.45 |
| Domain # | Start | End | Length |
|---|---|---|---|
| 1 | 248 | 267 | 19 |
Expression values
| Label | Description | Expression (RPKM) | Confidence interval (low) | Confidence interval (high) |
|---|---|---|---|---|
| SC16a | Pure fungal culture | 5.54 | 1.16 | 9.92 |
| CcL | In ants, during behavior modification | 702.61 | 181.35 | 1223.87 |
| CcD | In ants, recently dead | 217.98 | 111.75 | 324.20 |
Differential expression
| Label1 | Label2 | Q-value | Significant difference |
|---|---|---|---|
| SC16a | CcL | 0.000286 | yes |
| SC16a | CcD | 0.000286 | yes |
| CcL | CcD | 0.000286 | yes |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Ophio5|2660 MERDTKPPAPSQLQVLALGLPRSGTYSMASALSQLGLNKPFHGIDIGMNKKAWAIIDQACDASFPVLDSYNGRPF TRAQWDELFKDSEAVTDVGALFAPQLIEAYPEARVILVIRDFDSWLRSMEMLFDLIWNPLSTIMSYVVDPLLGIT VGITVRKLLLGFFEARDVGEARRNASRIFERHHQQIRKMVPPQQLLEYRMGQGWEPICDFLGKPVPETPFPRSND SEALAKLFWEGKKNSCYAAAKMCLPWLGVISAAAVFVYLSSIV |
| Coding | >Ophio5|2660 ATGGAAAGGGATACGAAGCCGCCGGCACCAAGCCAGCTCCAGGTGCTCGCCCTCGGCCTCCCGAGGAGCGGCACC TACTCCATGGCCAGCGCTCTCTCACAACTCGGCTTGAATAAGCCCTTTCACGGCATAGACATCGGCATGAACAAA AAAGCCTGGGCCATCATAGACCAAGCATGCGATGCCTCATTTCCGGTCCTGGACTCCTACAATGGCCGGCCATTC ACAAGGGCGCAATGGGACGAGCTTTTCAAAGATAGCGAGGCCGTGACCGACGTCGGGGCTCTCTTTGCGCCACAG CTTATTGAGGCTTACCCTGAGGCCCGTGTCATACTCGTCATCCGTGACTTTGACTCGTGGCTTCGCAGCATGGAA ATGCTATTCGATCTCATTTGGAATCCTCTTTCCACCATCATGTCTTACGTGGTCGATCCGTTACTTGGGATTACC GTCGGAATTACCGTCAGAAAGCTTCTGCTTGGGTTTTTCGAGGCCCGCGACGTGGGCGAGGCGCGGCGAAATGCG TCTAGGATCTTCGAGCGTCACCATCAGCAGATACGCAAGATGGTGCCTCCGCAACAACTGCTGGAATATCGCATG GGTCAAGGCTGGGAGCCGATTTGTGACTTTCTAGGGAAGCCCGTACCAGAAACCCCTTTTCCGAGGTCTAACGAT TCCGAAGCGCTGGCAAAGCTCTTCTGGGAGGGAAAAAAAAACAGCTGTTACGCCGCCGCCAAGATGTGCCTGCCA TGGCTCGGAGTCATATCTGCCGCCGCTGTTTTTGTCTACCTATCCTCGATCGTC |
| Transcript | >Ophio5|2660 ATGGAAAGGGATACGAAGCCGCCGGCACCAAGCCAGCTCCAGGTGCTCGCCCTCGGCCTCCCGAGGAGCGGCACC TACTCCATGGCCAGCGCTCTCTCACAACTCGGCTTGAATAAGCCCTTTCACGGCATAGACATCGGCATGAACAAA AAAGCCTGGGCCATCATAGACCAAGCATGCGATGCCTCATTTCCGGTCCTGGACTCCTACAATGGCCGGCCATTC ACAAGGGCGCAATGGGACGAGCTTTTCAAAGATAGCGAGGCCGTGACCGACGTCGGGGCTCTCTTTGCGCCACAG CTTATTGAGGCTTACCCTGAGGCCCGTGTCATACTCGTCATCCGTGACTTTGACTCGTGGCTTCGCAGCATGGAA ATGCTATTCGATCTCATTTGGAATCCTCTTTCCACCATCATGTCTTACGTGGTCGATCCGTTACTTGGGATTACC GTCGGAATTACCGTCAGAAAGCTTCTGCTTGGGTTTTTCGAGGCCCGCGACGTGGGCGAGGCGCGGCGAAATGCG TCTAGGATCTTCGAGCGTCACCATCAGCAGATACGCAAGATGGTGCCTCCGCAACAACTGCTGGAATATCGCATG GGTCAAGGCTGGGAGCCGATTTGTGACTTTCTAGGGAAGCCCGTACCAGAAACCCCTTTTCCGAGGTCTAACGAT TCCGAAGCGCTGGCAAAGCTCTTCTGGGAGGGAAAAAAAAACAGCTGTTACGCCGCCGCCAAGATGTGCCTGCCA TGGCTCGGAGTCATATCTGCCGCCGCTGTTTTTGTCTACCTATCCTCGATCGTCTAG |
| Gene | >Ophio5|2660 ATGGAAAGGGATACGAAGCCGCCGGCACCAAGCCAGCTCCAGGTGCTCGCCCTCGGCCTCCCGAGGAGCGGCACC TACTCCATGGCCAGCGCTCTCTCACAACTCGGCTTGAATAAGCCCTTTCACGGCATAGACATCGGCATGAACAAA AAAGCCTGGGCCATCATAGACCAAGCATGCGATGCCTCATTTCCGGTCCTGGACTCCTACAATGGCCGGCCATTC ACAAGGGCGCAATGGGACGAGCTTTTCAAAGATAGCGAGGCCGTGACCGACGTCGGGGCTCTCTTTGCGCCACAG CTTATTGAGGCTTACCCTGAGGCCCGTGTCATACTCGTCATCCGTGACTTTGACTCGTGGCTTCGCAGCATGGAA ATGCTATTCGATCTCATTTGGAATCCTCTTTCCACCATCATGTCTTACGTGGTCGATCCGTTACTTGGGATTACC GTCGGAATTACCGTCAGAAAGCTTCTGCTTGGGTTTTTCGAGGCCCGCGACGTGGGCGAGGCGCGGCGAAATGCG TCTAGGATCTTCGAGCGTCACCATCAGCAGATACGCAAGATGGTGCCTCCGCAACAACTGCTGGAATATCGCATG GGTCAAGGCTGGGAGCCGATTTGTGACTTTCTAGGGAAGCCCGTACCAGAAACCCCTTTTCCGAGGTCTAACGAT TCCGAAGCGCTGGCAAAGCTCTTCTGGGAGGGAAAAAAAAACAGCTGTTACGCCGCCGCCAAGATGTGCCTGCCA TGGCTCGGAGTCATATCTGCCGCCGCTGTTTTTGTCTACCTATCCTCGATCGTCTAG |