© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Ophio5|2653 |
| Gene name | |
| Location | scaffold_215:21679..22654 |
| Strand | - |
| Gene length (bp) | 975 |
| Transcript length (bp) | 975 |
| Coding sequence length (bp) | 972 |
| Protein length (aa) | 324 |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 12 | 0.5 |
| Domain # | Start | End | Length |
|---|---|---|---|
| 1 | 29 | 51 | 22 |
| 2 | 66 | 88 | 22 |
| 3 | 97 | 119 | 22 |
| 4 | 134 | 156 | 22 |
| 5 | 177 | 199 | 22 |
Expression values
| Label | Description | Expression (RPKM) | Confidence interval (low) | Confidence interval (high) |
|---|---|---|---|---|
| SC16a | Pure fungal culture | 1.38 | 0.00 | 2.82 |
| CcL | In ants, during behavior modification | 3.89 | 0.55 | 7.22 |
| CcD | In ants, recently dead | 2.28 | 0.16 | 4.40 |
Differential expression
| Label1 | Label2 | Q-value | Significant difference |
|---|---|---|---|
| SC16a | CcL | 0.029109 | yes |
| SC16a | CcD | 0.326083 | no |
| CcL | CcD | 0.244634 | no |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Ophio5|2653 MIVFISIALYNVLELNFLIANTFKKYQGLYFWSLIVATWGIALNAIGYLLRILQSDHSGYGHSTIILVGWCTMVT GQSLVLYSRLHFVLHNTTVLRGILILIIVDAIWLGVPVIVFVYGSNSDKSKLFIGPYAIFERIQLCVFTVQELII SGFYIVETSKTLKLQRRVGLAPLDARRGMAHLILANILIVLLDVSVLVLEFSGNYDIQTAWKPLVYSIKLKVEFS VLNRLVEFSQHMRTGSLAKMGSDTDKGASLGGMTMAASESPTEARYSVHVGTSQSHEINVNDNDEFCVVKTTDVY IDSSDNSASGGSSRDSTGLGTEPV |
| Coding | >Ophio5|2653 ATGATCGTCTTCATCAGCATCGCTCTCTACAACGTGCTGGAGCTAAACTTCCTGATCGCCAACACCTTCAAGAAA TACCAGGGCCTGTACTTTTGGAGCCTGATCGTGGCGACATGGGGAATCGCTCTCAACGCCATTGGCTACCTGCTG CGCATCTTGCAGTCTGATCACTCAGGCTATGGCCATTCCACCATCATCCTCGTCGGCTGGTGCACCATGGTGACG GGACAGTCGCTGGTCCTGTATTCACGCCTGCATTTCGTCTTGCACAACACGACGGTGCTGCGTGGCATCCTCATC TTGATCATCGTAGATGCCATTTGGCTGGGCGTCCCCGTCATCGTCTTCGTTTACGGCTCCAACAGCGACAAGTCC AAGCTTTTTATCGGGCCGTATGCCATCTTCGAGAGGATCCAGCTGTGCGTCTTCACGGTGCAGGAACTCATCATC TCCGGCTTCTATATCGTCGAGACATCCAAGACACTGAAGCTCCAGAGGCGTGTGGGTTTAGCGCCTCTCGACGCG CGCCGTGGCATGGCCCATCTCATCCTGGCCAACATACTCATAGTCCTGCTCGATGTGAGCGTCCTGGTGCTCGAG TTCAGCGGAAACTACGACATTCAGACGGCGTGGAAGCCGCTGGTGTACAGCATCAAGCTCAAGGTCGAGTTCAGT GTACTGAACCGGCTCGTCGAGTTTTCACAGCACATGAGGACAGGGAGTCTAGCCAAGATGGGTTCGGACACGGAC AAGGGCGCCTCTCTCGGCGGCATGACCATGGCCGCCTCCGAGTCGCCGACGGAAGCGCGATACAGCGTCCATGTC GGCACGTCTCAGAGCCACGAGATCAACGTGAACGACAACGACGAATTCTGCGTTGTCAAGACCACCGACGTCTAC ATCGATAGCTCAGACAACTCGGCTAGCGGCGGCAGCTCCCGCGACTCTACCGGCCTTGGCACCGAACCAGTA |
| Transcript | >Ophio5|2653 ATGATCGTCTTCATCAGCATCGCTCTCTACAACGTGCTGGAGCTAAACTTCCTGATCGCCAACACCTTCAAGAAA TACCAGGGCCTGTACTTTTGGAGCCTGATCGTGGCGACATGGGGAATCGCTCTCAACGCCATTGGCTACCTGCTG CGCATCTTGCAGTCTGATCACTCAGGCTATGGCCATTCCACCATCATCCTCGTCGGCTGGTGCACCATGGTGACG GGACAGTCGCTGGTCCTGTATTCACGCCTGCATTTCGTCTTGCACAACACGACGGTGCTGCGTGGCATCCTCATC TTGATCATCGTAGATGCCATTTGGCTGGGCGTCCCCGTCATCGTCTTCGTTTACGGCTCCAACAGCGACAAGTCC AAGCTTTTTATCGGGCCGTATGCCATCTTCGAGAGGATCCAGCTGTGCGTCTTCACGGTGCAGGAACTCATCATC TCCGGCTTCTATATCGTCGAGACATCCAAGACACTGAAGCTCCAGAGGCGTGTGGGTTTAGCGCCTCTCGACGCG CGCCGTGGCATGGCCCATCTCATCCTGGCCAACATACTCATAGTCCTGCTCGATGTGAGCGTCCTGGTGCTCGAG TTCAGCGGAAACTACGACATTCAGACGGCGTGGAAGCCGCTGGTGTACAGCATCAAGCTCAAGGTCGAGTTCAGT GTACTGAACCGGCTCGTCGAGTTTTCACAGCACATGAGGACAGGGAGTCTAGCCAAGATGGGTTCGGACACGGAC AAGGGCGCCTCTCTCGGCGGCATGACCATGGCCGCCTCCGAGTCGCCGACGGAAGCGCGATACAGCGTCCATGTC GGCACGTCTCAGAGCCACGAGATCAACGTGAACGACAACGACGAATTCTGCGTTGTCAAGACCACCGACGTCTAC ATCGATAGCTCAGACAACTCGGCTAGCGGCGGCAGCTCCCGCGACTCTACCGGCCTTGGCACCGAACCAGTATAG |
| Gene | >Ophio5|2653 ATGATCGTCTTCATCAGCATCGCTCTCTACAACGTGCTGGAGCTAAACTTCCTGATCGCCAACACCTTCAAGAAA TACCAGGGCCTGTACTTTTGGAGCCTGATCGTGGCGACATGGGGAATCGCTCTCAACGCCATTGGCTACCTGCTG CGCATCTTGCAGTCTGATCACTCAGGCTATGGCCATTCCACCATCATCCTCGTCGGCTGGTGCACCATGGTGACG GGACAGTCGCTGGTCCTGTATTCACGCCTGCATTTCGTCTTGCACAACACGACGGTGCTGCGTGGCATCCTCATC TTGATCATCGTAGATGCCATTTGGCTGGGCGTCCCCGTCATCGTCTTCGTTTACGGCTCCAACAGCGACAAGTCC AAGCTTTTTATCGGGCCGTATGCCATCTTCGAGAGGATCCAGCTGTGCGTCTTCACGGTGCAGGAACTCATCATC TCCGGCTTCTATATCGTCGAGACATCCAAGACACTGAAGCTCCAGAGGCGTGTGGGTTTAGCGCCTCTCGACGCG CGCCGTGGCATGGCCCATCTCATCCTGGCCAACATACTCATAGTCCTGCTCGATGTGAGCGTCCTGGTGCTCGAG TTCAGCGGAAACTACGACATTCAGACGGCGTGGAAGCCGCTGGTGTACAGCATCAAGCTCAAGGTCGAGTTCAGT GTACTGAACCGGCTCGTCGAGTTTTCACAGCACATGAGGACAGGGAGTCTAGCCAAGATGGGTTCGGACACGGAC AAGGGCGCCTCTCTCGGCGGCATGACCATGGCCGCCTCCGAGTCGCCGACGGAAGCGCGATACAGCGTCCATGTC GGCACGTCTCAGAGCCACGAGATCAACGTGAACGACAACGACGAATTCTGCGTTGTCAAGACCACCGACGTCTAC ATCGATAGCTCAGACAACTCGGCTAGCGGCGGCAGCTCCCGCGACTCTACCGGCCTTGGCACCGAACCAGTATAG |