Fungal Genomics

at Utrecht University

General Properties

Protein IDOphio5|262
Gene name
Locationscaffold_1052:1868..2339
Strand+
Gene length (bp)471
Transcript length (bp)399
Coding sequence length (bp)396
Protein length (aa) 132

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PFAM Domains

(None)

Swissprot hits

(None)

GO

(None)

SignalP

[Help with interpreting these statistics]
SignalP signal predicted Location
(based on Ymax)
D score
(significance: > 0.45)
No 1 - 36 0.5

Transmembrane Domains

Domain # Start End Length
1 37 59 22

Transcription Factor Class

(None)

Expression data

Analysis 1: Expression analysis during behavioral modification. Published in De Bekker et al., 2017.

Expression values

Label Description Expression (RPKM) Confidence interval (low) Confidence interval (high)
SC16a Pure fungal culture 23.97 6.62 41.32
CcL In ants, during behavior modification 1.26 0.00 3.35
CcD In ants, recently dead 3.82 0.00 8.11

Differential expression

Label1 Label2 Q-value Significant difference
SC16a CcL 0.015407 yes
SC16a CcD 0.000770 yes
CcL CcD 0.144424 no

Sequences

Type of sequenceSequence
Locus Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein >Ophio5|262
MRCHEERHESTTLPAAARILRLVAHAAACLCPTLCQPVTTTTTTIIIIFFFVVVVIIIIDTRRRRRDGRHSRRPA
NISFSYSGHPPACQPNCEDRQTGNKGCFFLATSCSRIATRRRRRHHHHRFQPPSHQI
Coding >Ophio5|262
ATGCGATGCCATGAAGAACGCCACGAATCAACAACTTTGCCCGCGGCTGCACGAATCCTACGGCTCGTCGCACAT
GCAGCTGCCTGTCTCTGTCCGACTCTGTGCCAACCTGTCACCACCACCACCACCACCATCATCATCATCTTCTTC
TTCGTCGTCGTCGTCATCATCATCATCGACACTAGGCGGAGAAGAAGGGATGGGAGACACAGTCGCCGGCCGGCC
AATATCAGCTTCAGCTATAGCGGGCACCCCCCAGCGTGTCAACCGAATTGCGAGGACAGACAGACAGGGAACAAG
GGTTGTTTCTTTCTTGCGACTTCTTGTTCACGCATCGCTACCCGCCGCCGCCGCCGCCACCACCACCATCGTTTC
CAGCCACCGTCGCATCAGATC
Transcript >Ophio5|262
ATGCGATGCCATGAAGAACGCCACGAATCAACAACTTTGCCCGCGGCTGCACGAATCCTACGGCTCGTCGCACAT
GCAGCTGCCTGTCTCTGTCCGACTCTGTGCCAACCTGTCACCACCACCACCACCACCATCATCATCATCTTCTTC
TTCGTCGTCGTCGTCATCATCATCATCGACACTAGGCGGAGAAGAAGGGATGGGAGACACAGTCGCCGGCCGGCC
AATATCAGCTTCAGCTATAGCGGGCACCCCCCAGCGTGTCAACCGAATTGCGAGGACAGACAGACAGGGAACAAG
GGTTGTTTCTTTCTTGCGACTTCTTGTTCACGCATCGCTACCCGCCGCCGCCGCCGCCACCACCACCATCGTTTC
CAGCCACCGTCGCATCAGATCTGA
Gene >Ophio5|262
ATGCGATGCCATGAAGAACGCCACGAATCAACAACTTTGCCCGCGGCTGCACGAATCCTACGGCTCGTCGCACAT
GCAGCTGCCTGTCTCTGTCCGACTCTGTGCCAACCTGTCACCACCACCACCACCACCATCATCATCATCTTCTTC
TTCGTCGTCGTCGTCATCATCATCATCGACACTAGGCGGAGAAGAAGGGATGGGAGACACAGTCGCCGGCCGGCC
AATATCAGCTTCAGCTATAGGTAGCTCGTTGCAGACTTTCTATGAGGCACCGTCTCCATCAGGAGTGACACCTGC
TCATCATCCTGCTGCAGCGGGCACCCCCCAGCGTGTCAACCGAATTGCGAGGACAGACAGACAGGGAACAAGGGT
TGTTTCTTTCTTGCGACTTCTTGTTCACGCATCGCTACCCGCCGCCGCCGCCGCCACCACCACCATCGTTTCCAG
CCACCGTCGCATCAGATCTGA

© 2022 - Robin Ohm - Utrecht University - The Netherlands

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