© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Ophio5|2585 |
| Gene name | |
| Location | scaffold_210:25345..27064 |
| Strand | + |
| Gene length (bp) | 1719 |
| Transcript length (bp) | 1719 |
| Coding sequence length (bp) | 1716 |
| Protein length (aa) | 572 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF00443 | UCH | Ubiquitin carboxyl-terminal hydrolase | 5.7E-34 | 17 | 481 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|P25037|UBP1_YEAST | Ubiquitin carboxyl-terminal hydrolase 1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=UBP1 PE=1 SV=2 | 16 | 365 | 1.0E-28 |
| sp|Q9FPS0|UBP27_ARATH | Ubiquitin carboxyl-terminal hydrolase 27 OS=Arabidopsis thaliana GN=UBP27 PE=2 SV=1 | 11 | 471 | 4.0E-16 |
| sp|P0CAQ1|UBP16_EMENI | Ubiquitin carboxyl-terminal hydrolase 16 OS=Emericella nidulans (strain FGSC A4 / ATCC 38163 / CBS 112.46 / NRRL 194 / M139) GN=ubp16 PE=3 SV=1 | 16 | 417 | 2.0E-11 |
| sp|Q9W462|UBP30_DROME | Ubiquitin carboxyl-terminal hydrolase 30 homolog OS=Drosophila melanogaster GN=Usp30 PE=2 SV=1 | 289 | 432 | 3.0E-07 |
| sp|Q4R6D3|UBP50_MACFA | Putative ubiquitin carboxyl-terminal hydrolase 50 OS=Macaca fascicularis GN=USP50 PE=2 SV=1 | 12 | 122 | 6.0E-07 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0004843 | cysteine-type deubiquitinase activity | Yes |
| GO:0016579 | protein deubiquitination | Yes |
| GO:0140096 | catalytic activity, acting on a protein | No |
| GO:0043170 | macromolecule metabolic process | No |
| GO:0008150 | biological_process | No |
| GO:1901564 | organonitrogen compound metabolic process | No |
| GO:0044238 | primary metabolic process | No |
| GO:0006508 | proteolysis | No |
| GO:0101005 | deubiquitinase activity | No |
| GO:0043412 | macromolecule modification | No |
| GO:0008152 | metabolic process | No |
| GO:0003674 | molecular_function | No |
| GO:0008233 | peptidase activity | No |
| GO:0071704 | organic substance metabolic process | No |
| GO:0070646 | protein modification by small protein removal | No |
| GO:0016787 | hydrolase activity | No |
| GO:0070647 | protein modification by small protein conjugation or removal | No |
| GO:0019538 | protein metabolic process | No |
| GO:0036211 | protein modification process | No |
| GO:0006807 | nitrogen compound metabolic process | No |
| GO:0019783 | ubiquitin-like protein peptidase activity | No |
| GO:0003824 | catalytic activity | No |
| GO:0008234 | cysteine-type peptidase activity | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 65 | 0.45 |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Ophio5|2585 MTGGVLGLRSDSQRPAGLGNRDNSCYQNSILQGLAALDPLPEFLTACVRAVGSHDDDDDVAQSLLDLVGDLNDSS NNGKTIWTPCLLKSMSTWTQQDAQEYYSKLLDDIDKAVAKAVREARRYSGLEADCGRDEAAASQHSDDSGYQSLS SGPDLSAIKPLRNPLEGLLAQRVACVQCGFSEGLSMIPFNCLTLSLGLDKNRHDLFERLDAYSRVESIEGVECPK CTLLKTQRLLKKLLDRMRDGGAAEEQVHEPRRRLDAVEAALEEDQFDEKTLSERCKISSQGKVSSTKTKQIVIAR PPQSLAIHVNRSVFDPSTFDMIKNSAPVSFPLTLDLGPWCLGSSEDIETHLESEKPTEGDGDGDEAEERWQPYCP DASMIAGDACPSRLTGPIYELRAVVTHAGRHENGHYICYRRHVGQGAVKALGSADTVKDDQDAGGPGGLATGRSA GDWWRLSDHNVSMVDEGTILGLGPGVFMLLYDCVDSTMVPRSEVEASEATARASSDGSSEPTLGLEDEAELPFGA DSLPERVLLPDSQGGSESEAEAEAEAEAEAEAESEMEGLRDPSRRGG |
| Coding | >Ophio5|2585 ATGACGGGGGGCGTTTTGGGCCTGAGATCCGACTCGCAGAGGCCGGCCGGTCTCGGCAACCGAGACAACTCTTGT TATCAGAACAGCATACTGCAGGGTCTGGCTGCCCTCGATCCCTTGCCCGAATTTCTCACAGCCTGTGTGCGTGCT GTCGGCTCGCACGACGATGACGATGACGTTGCGCAGTCTCTTCTAGACCTAGTTGGTGATCTGAACGACTCATCC AACAACGGGAAAACAATCTGGACGCCGTGCTTGCTAAAGTCGATGAGCACGTGGACTCAACAGGATGCACAGGAA TACTACTCGAAACTGCTCGACGACATCGACAAGGCCGTGGCCAAGGCGGTCAGGGAGGCGCGCCGCTACTCGGGC TTGGAAGCAGATTGTGGCAGGGATGAAGCGGCCGCCAGCCAACACAGCGACGACAGCGGCTATCAGAGCTTGTCG TCGGGCCCAGACCTGTCGGCAATCAAGCCGCTCCGCAACCCACTAGAAGGCCTGCTGGCACAACGAGTTGCCTGC GTCCAATGTGGCTTCTCAGAGGGGTTGTCGATGATCCCGTTCAACTGCCTGACACTCAGCCTCGGCCTGGATAAG AATCGACACGACCTCTTCGAACGACTGGACGCTTACAGCCGCGTTGAGAGCATCGAAGGCGTCGAGTGCCCCAAG TGCACACTACTCAAAACGCAGCGACTCCTGAAGAAGCTTCTCGACAGGATGCGCGACGGCGGCGCGGCGGAGGAG CAGGTGCACGAACCGCGACGTAGGCTTGACGCGGTCGAAGCGGCCCTCGAAGAGGACCAGTTTGACGAAAAAACA TTATCAGAGAGGTGTAAGATATCGAGTCAAGGAAAAGTCAGTTCGACCAAGACGAAGCAAATCGTCATCGCACGG CCGCCGCAAAGCCTTGCGATCCACGTCAACCGGTCTGTCTTCGATCCGTCGACCTTTGATATGATCAAGAACTCG GCTCCGGTCAGCTTCCCGCTGACGCTTGACCTCGGGCCATGGTGTCTGGGGAGCTCCGAGGATATAGAGACGCAC TTGGAGTCGGAAAAGCCGACGGAGGGCGACGGCGACGGCGACGAGGCTGAGGAGCGGTGGCAACCCTACTGTCCT GACGCGTCGATGATCGCCGGCGACGCGTGTCCCTCGCGACTGACGGGGCCAATATACGAACTACGAGCGGTAGTG ACGCACGCCGGACGGCATGAAAACGGCCATTACATCTGTTATCGGAGACATGTTGGCCAGGGAGCGGTCAAGGCC CTTGGTTCGGCAGATACGGTCAAGGACGACCAGGATGCAGGCGGCCCTGGCGGATTGGCAACGGGTCGCAGCGCA GGCGACTGGTGGAGGCTCAGTGACCACAACGTGAGCATGGTCGACGAGGGGACGATTCTGGGATTGGGGCCAGGC GTCTTCATGCTGCTGTACGATTGCGTCGATTCCACCATGGTGCCACGCAGCGAAGTAGAGGCTTCCGAGGCGACT GCGCGCGCCAGCAGCGATGGATCGAGTGAGCCTACGCTTGGGCTGGAAGACGAAGCGGAGCTACCTTTTGGGGCG GATTCCCTGCCGGAGAGGGTCCTGCTACCGGACAGCCAGGGCGGTTCGGAGTCCGAGGCGGAGGCGGAGGCGGAG GCGGAGGCGGAGGCGGAGGCTGAGTCGGAGATGGAAGGGCTACGGGACCCCAGCCGACGAGGGGGA |
| Transcript | >Ophio5|2585 ATGACGGGGGGCGTTTTGGGCCTGAGATCCGACTCGCAGAGGCCGGCCGGTCTCGGCAACCGAGACAACTCTTGT TATCAGAACAGCATACTGCAGGGTCTGGCTGCCCTCGATCCCTTGCCCGAATTTCTCACAGCCTGTGTGCGTGCT GTCGGCTCGCACGACGATGACGATGACGTTGCGCAGTCTCTTCTAGACCTAGTTGGTGATCTGAACGACTCATCC AACAACGGGAAAACAATCTGGACGCCGTGCTTGCTAAAGTCGATGAGCACGTGGACTCAACAGGATGCACAGGAA TACTACTCGAAACTGCTCGACGACATCGACAAGGCCGTGGCCAAGGCGGTCAGGGAGGCGCGCCGCTACTCGGGC TTGGAAGCAGATTGTGGCAGGGATGAAGCGGCCGCCAGCCAACACAGCGACGACAGCGGCTATCAGAGCTTGTCG TCGGGCCCAGACCTGTCGGCAATCAAGCCGCTCCGCAACCCACTAGAAGGCCTGCTGGCACAACGAGTTGCCTGC GTCCAATGTGGCTTCTCAGAGGGGTTGTCGATGATCCCGTTCAACTGCCTGACACTCAGCCTCGGCCTGGATAAG AATCGACACGACCTCTTCGAACGACTGGACGCTTACAGCCGCGTTGAGAGCATCGAAGGCGTCGAGTGCCCCAAG TGCACACTACTCAAAACGCAGCGACTCCTGAAGAAGCTTCTCGACAGGATGCGCGACGGCGGCGCGGCGGAGGAG CAGGTGCACGAACCGCGACGTAGGCTTGACGCGGTCGAAGCGGCCCTCGAAGAGGACCAGTTTGACGAAAAAACA TTATCAGAGAGGTGTAAGATATCGAGTCAAGGAAAAGTCAGTTCGACCAAGACGAAGCAAATCGTCATCGCACGG CCGCCGCAAAGCCTTGCGATCCACGTCAACCGGTCTGTCTTCGATCCGTCGACCTTTGATATGATCAAGAACTCG GCTCCGGTCAGCTTCCCGCTGACGCTTGACCTCGGGCCATGGTGTCTGGGGAGCTCCGAGGATATAGAGACGCAC TTGGAGTCGGAAAAGCCGACGGAGGGCGACGGCGACGGCGACGAGGCTGAGGAGCGGTGGCAACCCTACTGTCCT GACGCGTCGATGATCGCCGGCGACGCGTGTCCCTCGCGACTGACGGGGCCAATATACGAACTACGAGCGGTAGTG ACGCACGCCGGACGGCATGAAAACGGCCATTACATCTGTTATCGGAGACATGTTGGCCAGGGAGCGGTCAAGGCC CTTGGTTCGGCAGATACGGTCAAGGACGACCAGGATGCAGGCGGCCCTGGCGGATTGGCAACGGGTCGCAGCGCA GGCGACTGGTGGAGGCTCAGTGACCACAACGTGAGCATGGTCGACGAGGGGACGATTCTGGGATTGGGGCCAGGC GTCTTCATGCTGCTGTACGATTGCGTCGATTCCACCATGGTGCCACGCAGCGAAGTAGAGGCTTCCGAGGCGACT GCGCGCGCCAGCAGCGATGGATCGAGTGAGCCTACGCTTGGGCTGGAAGACGAAGCGGAGCTACCTTTTGGGGCG GATTCCCTGCCGGAGAGGGTCCTGCTACCGGACAGCCAGGGCGGTTCGGAGTCCGAGGCGGAGGCGGAGGCGGAG GCGGAGGCGGAGGCGGAGGCTGAGTCGGAGATGGAAGGGCTACGGGACCCCAGCCGACGAGGGGGATAA |
| Gene | >Ophio5|2585 ATGACGGGGGGCGTTTTGGGCCTGAGATCCGACTCGCAGAGGCCGGCCGGTCTCGGCAACCGAGACAACTCTTGT TATCAGAACAGCATACTGCAGGGTCTGGCTGCCCTCGATCCCTTGCCCGAATTTCTCACAGCCTGTGTGCGTGCT GTCGGCTCGCACGACGATGACGATGACGTTGCGCAGTCTCTTCTAGACCTAGTTGGTGATCTGAACGACTCATCC AACAACGGGAAAACAATCTGGACGCCGTGCTTGCTAAAGTCGATGAGCACGTGGACTCAACAGGATGCACAGGAA TACTACTCGAAACTGCTCGACGACATCGACAAGGCCGTGGCCAAGGCGGTCAGGGAGGCGCGCCGCTACTCGGGC TTGGAAGCAGATTGTGGCAGGGATGAAGCGGCCGCCAGCCAACACAGCGACGACAGCGGCTATCAGAGCTTGTCG TCGGGCCCAGACCTGTCGGCAATCAAGCCGCTCCGCAACCCACTAGAAGGCCTGCTGGCACAACGAGTTGCCTGC GTCCAATGTGGCTTCTCAGAGGGGTTGTCGATGATCCCGTTCAACTGCCTGACACTCAGCCTCGGCCTGGATAAG AATCGACACGACCTCTTCGAACGACTGGACGCTTACAGCCGCGTTGAGAGCATCGAAGGCGTCGAGTGCCCCAAG TGCACACTACTCAAAACGCAGCGACTCCTGAAGAAGCTTCTCGACAGGATGCGCGACGGCGGCGCGGCGGAGGAG CAGGTGCACGAACCGCGACGTAGGCTTGACGCGGTCGAAGCGGCCCTCGAAGAGGACCAGTTTGACGAAAAAACA TTATCAGAGAGGTGTAAGATATCGAGTCAAGGAAAAGTCAGTTCGACCAAGACGAAGCAAATCGTCATCGCACGG CCGCCGCAAAGCCTTGCGATCCACGTCAACCGGTCTGTCTTCGATCCGTCGACCTTTGATATGATCAAGAACTCG GCTCCGGTCAGCTTCCCGCTGACGCTTGACCTCGGGCCATGGTGTCTGGGGAGCTCCGAGGATATAGAGACGCAC TTGGAGTCGGAAAAGCCGACGGAGGGCGACGGCGACGGCGACGAGGCTGAGGAGCGGTGGCAACCCTACTGTCCT GACGCGTCGATGATCGCCGGCGACGCGTGTCCCTCGCGACTGACGGGGCCAATATACGAACTACGAGCGGTAGTG ACGCACGCCGGACGGCATGAAAACGGCCATTACATCTGTTATCGGAGACATGTTGGCCAGGGAGCGGTCAAGGCC CTTGGTTCGGCAGATACGGTCAAGGACGACCAGGATGCAGGCGGCCCTGGCGGATTGGCAACGGGTCGCAGCGCA GGCGACTGGTGGAGGCTCAGTGACCACAACGTGAGCATGGTCGACGAGGGGACGATTCTGGGATTGGGGCCAGGC GTCTTCATGCTGCTGTACGATTGCGTCGATTCCACCATGGTGCCACGCAGCGAAGTAGAGGCTTCCGAGGCGACT GCGCGCGCCAGCAGCGATGGATCGAGTGAGCCTACGCTTGGGCTGGAAGACGAAGCGGAGCTACCTTTTGGGGCG GATTCCCTGCCGGAGAGGGTCCTGCTACCGGACAGCCAGGGCGGTTCGGAGTCCGAGGCGGAGGCGGAGGCGGAG GCGGAGGCGGAGGCGGAGGCTGAGTCGGAGATGGAAGGGCTACGGGACCCCAGCCGACGAGGGGGATAA |