Fungal Genomics

at Utrecht University

General Properties

Protein IDOphio5|2575
Gene name
Locationscaffold_210:23..1426
Strand+
Gene length (bp)1403
Transcript length (bp)1320
Coding sequence length (bp)1317
Protein length (aa) 439

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PFAM Domains

PFAM Domain ID Short name Long name E-value Start End
PF01008 IF-2B Initiation factor 2 subunit family 5.4E-46 161 423

Swissprot hits

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Swissprot ID Swissprot Description Start End E-value
sp|Q09924|EI2BD_SCHPO Probable translation initiation factor eIF-2B subunit delta OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=tif224 PE=1 SV=1 1 439 5.0E-77
sp|Q63186|EI2BD_RAT Translation initiation factor eIF-2B subunit delta OS=Rattus norvegicus GN=Eif2b4 PE=2 SV=1 40 434 4.0E-52
sp|P41111|EI2BD_RABIT Translation initiation factor eIF-2B subunit delta OS=Oryctolagus cuniculus GN=EIF2B4 PE=2 SV=2 24 434 8.0E-52
sp|Q61749|EI2BD_MOUSE Translation initiation factor eIF-2B subunit delta OS=Mus musculus GN=Eif2b4 PE=1 SV=2 118 434 2.0E-51
sp|Q9UI10|EI2BD_HUMAN Translation initiation factor eIF-2B subunit delta OS=Homo sapiens GN=EIF2B4 PE=1 SV=2 118 434 2.0E-50
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Swissprot ID Swissprot Description Start End E-value
sp|Q09924|EI2BD_SCHPO Probable translation initiation factor eIF-2B subunit delta OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=tif224 PE=1 SV=1 1 439 5.0E-77
sp|Q63186|EI2BD_RAT Translation initiation factor eIF-2B subunit delta OS=Rattus norvegicus GN=Eif2b4 PE=2 SV=1 40 434 4.0E-52
sp|P41111|EI2BD_RABIT Translation initiation factor eIF-2B subunit delta OS=Oryctolagus cuniculus GN=EIF2B4 PE=2 SV=2 24 434 8.0E-52
sp|Q61749|EI2BD_MOUSE Translation initiation factor eIF-2B subunit delta OS=Mus musculus GN=Eif2b4 PE=1 SV=2 118 434 2.0E-51
sp|Q9UI10|EI2BD_HUMAN Translation initiation factor eIF-2B subunit delta OS=Homo sapiens GN=EIF2B4 PE=1 SV=2 118 434 2.0E-50
sp|Q3T058|EI2BD_BOVIN Translation initiation factor eIF-2B subunit delta OS=Bos taurus GN=EIF2B4 PE=2 SV=1 24 434 2.0E-47
sp|Q54FM3|EI2BD_DICDI Translation initiation factor eIF-2B subunit delta OS=Dictyostelium discoideum GN=eif2b4 PE=3 SV=1 114 435 3.0E-47
sp|P12754|EI2BD_YEAST Translation initiation factor eIF-2B subunit delta OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=GCD2 PE=1 SV=1 114 394 5.0E-47
sp|Q54I81|EI2BA_DICDI Translation initiation factor eIF-2B subunit alpha OS=Dictyostelium discoideum GN=eif2b1 PE=3 SV=1 213 436 3.0E-11
sp|O57947|R15PI_PYRHO Ribose 1,5-bisphosphate isomerase OS=Pyrococcus horikoshii (strain ATCC 700860 / DSM 12428 / JCM 9974 / NBRC 100139 / OT-3) GN=PH0208 PE=3 SV=1 197 435 1.0E-10
sp|Q8U4G6|R15PI_PYRFU Ribose 1,5-bisphosphate isomerase OS=Pyrococcus furiosus (strain ATCC 43587 / DSM 3638 / JCM 8422 / Vc1) GN=PF0122 PE=3 SV=2 182 435 2.0E-10
sp|Q57586|R15PI_METJA Ribose 1,5-bisphosphate isomerase OS=Methanocaldococcus jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440) GN=MJ0122 PE=3 SV=1 197 435 2.0E-09
sp|Q9V281|R15PI_PYRAB Ribose 1,5-bisphosphate isomerase OS=Pyrococcus abyssi (strain GE5 / Orsay) GN=PYRAB01930 PE=3 SV=1 197 435 2.0E-09
sp|Q8U3J1|EI2BL_PYRFU Putative translation initiation factor eIF-2B subunit 2-like OS=Pyrococcus furiosus (strain ATCC 43587 / DSM 3638 / JCM 8422 / Vc1) GN=PF0475 PE=3 SV=1 253 422 4.0E-09
sp|O28242|R15PI_ARCFU Ribose 1,5-bisphosphate isomerase OS=Archaeoglobus fulgidus (strain ATCC 49558 / VC-16 / DSM 4304 / JCM 9628 / NBRC 100126) GN=AF_2037 PE=3 SV=1 195 422 8.0E-09
sp|Q5JFM9|R15PI_THEKO Ribose 1,5-bisphosphate isomerase OS=Thermococcus kodakarensis (strain ATCC BAA-918 / JCM 12380 / KOD1) GN=TK0185 PE=1 SV=1 251 435 8.0E-09
sp|Q9UYB6|EI2BL_PYRAB Putative translation initiation factor eIF-2B subunit 2-like OS=Pyrococcus abyssi (strain GE5 / Orsay) GN=PYRAB15920 PE=3 SV=1 253 424 1.0E-06
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GO

GO Term Description Terminal node
GO:0044237 cellular metabolic process Yes
GO:0008152 metabolic process No
GO:0009987 cellular process No
GO:0008150 biological_process No

SignalP

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SignalP signal predicted Location
(based on Ymax)		 D score
(significance: > 0.45)
No 1 - 47 0.45

Transmembrane Domains

(None)

Transcription Factor Class

(None)

Expression data

Analysis 1: Expression analysis during behavioral modification. Published in De Bekker et al., 2017.

Expression values

Label Description Expression (RPKM) Confidence interval (low) Confidence interval (high)
SC16a Pure fungal culture 70.77 38.84 102.70
CcL In ants, during behavior modification 85.85 46.36 125.34
CcD In ants, recently dead 101.92 55.25 148.58

Differential expression

Label1 Label2 Q-value Significant difference
SC16a CcL 0.421525 no
SC16a CcD 0.103454 no
CcL CcD 0.493502 no

Sequences

Type of sequenceSequence
Locus Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein >Ophio5|2575
MAGETGQPAGDGADKKRKKEGQKQDATANEASPNKDKKLSNAELKKKAKEDKAARRAAAKSSQPSQPAAAPQLQP
PTPSGSEAKTSVASAASRARPKSHHDGGGGGTRPPKPKMPECFSHLSMARRLTLTQADKDVHPTVLALGQQMGCF
ALGDSITRLEATLMAFKKVIDAYTTPHGATFSRHFTSHVLNPQIEYLAACRPMCFSMGNAIRWLKLQISKLDIDL
PDSDAKKYLCALIDSFISERITLADFVIVNTAAEKVSDGDVVVVYGHHHLVQRTLLRARSDGRKFRVVVVDDAFQ
RVGYQLAKALAAAEIAVSYVSDLGALRTTLARATLVMTAAEAMFSNGAMYARAGTCDVATVAADVGLAVVVLCET
INFTDRVAIDSLTYNEIDPESCDDEGFRLLFDTTMHRYISVVVTELGTTSAKSVPAILRKLEEL
Coding >Ophio5|2575
ATGGCTGGCGAGACTGGCCAGCCGGCGGGCGACGGCGCCGACAAGAAGCGAAAGAAGGAGGGTCAAAAACAGGAT
GCCACAGCGAACGAAGCATCGCCCAACAAGGACAAGAAACTCTCCAACGCAGAGCTCAAGAAAAAGGCAAAGGAG
GACAAGGCGGCGAGACGAGCAGCAGCCAAATCAAGCCAGCCGTCCCAACCAGCAGCCGCCCCTCAGCTGCAACCA
CCGACGCCGTCCGGCAGCGAGGCAAAAACCAGCGTCGCCTCCGCCGCTTCCAGGGCTCGGCCCAAGTCGCATCAC
GATGGTGGTGGTGGCGGCACCCGCCCGCCCAAGCCCAAGATGCCCGAGTGCTTCAGCCACCTGTCGATGGCGCGG
CGCTTGACGCTCACGCAGGCTGACAAGGACGTCCATCCTACCGTGTTGGCGTTGGGGCAGCAAATGGGCTGCTTT
GCTCTTGGTGATAGCATCACCAGGCTCGAGGCTACTCTTATGGCCTTTAAAAAGGTCATCGATGCCTACACGACG
CCCCATGGCGCAACCTTCTCTCGACACTTTACGTCGCACGTCCTCAATCCTCAGATCGAATACCTCGCCGCCTGT
CGACCCATGTGCTTCTCCATGGGTAACGCCATTCGTTGGCTCAAGCTGCAAATCAGCAAGTTGGATATTGACCTG
CCGGACTCGGACGCCAAGAAATACCTCTGTGCGCTCATCGACAGCTTCATCAGCGAACGCATCACCCTCGCCGAC
TTCGTCATCGTCAACACGGCGGCCGAAAAGGTTTCCGACGGGGACGTCGTCGTCGTCTACGGTCATCATCATCTC
GTCCAACGTACCCTCCTTCGCGCCCGCTCCGACGGTCGAAAGTTTAGAGTCGTCGTCGTCGACGACGCCTTCCAA
CGGGTCGGCTACCAACTCGCAAAGGCTCTAGCCGCCGCCGAGATAGCCGTGAGCTACGTTTCCGATCTCGGCGCC
TTACGGACGACGCTCGCTCGCGCTACCTTGGTCATGACGGCCGCCGAGGCCATGTTCAGCAACGGCGCCATGTAC
GCCCGCGCCGGCACCTGCGACGTCGCCACCGTCGCGGCTGATGTTGGACTCGCCGTCGTCGTCCTCTGCGAGACT
ATCAACTTTACCGACCGTGTTGCCATCGACTCTCTCACCTATAACGAGATCGACCCGGAGAGCTGTGATGACGAG
GGCTTTCGTCTACTCTTCGATACTACCATGCATCGCTACATCTCCGTCGTCGTCACGGAGCTCGGCACGACTTCG
GCCAAGTCGGTACCGGCCATCCTGCGGAAACTGGAGGAGCTG
Transcript >Ophio5|2575
ATGGCTGGCGAGACTGGCCAGCCGGCGGGCGACGGCGCCGACAAGAAGCGAAAGAAGGAGGGTCAAAAACAGGAT
GCCACAGCGAACGAAGCATCGCCCAACAAGGACAAGAAACTCTCCAACGCAGAGCTCAAGAAAAAGGCAAAGGAG
GACAAGGCGGCGAGACGAGCAGCAGCCAAATCAAGCCAGCCGTCCCAACCAGCAGCCGCCCCTCAGCTGCAACCA
CCGACGCCGTCCGGCAGCGAGGCAAAAACCAGCGTCGCCTCCGCCGCTTCCAGGGCTCGGCCCAAGTCGCATCAC
GATGGTGGTGGTGGCGGCACCCGCCCGCCCAAGCCCAAGATGCCCGAGTGCTTCAGCCACCTGTCGATGGCGCGG
CGCTTGACGCTCACGCAGGCTGACAAGGACGTCCATCCTACCGTGTTGGCGTTGGGGCAGCAAATGGGCTGCTTT
GCTCTTGGTGATAGCATCACCAGGCTCGAGGCTACTCTTATGGCCTTTAAAAAGGTCATCGATGCCTACACGACG
CCCCATGGCGCAACCTTCTCTCGACACTTTACGTCGCACGTCCTCAATCCTCAGATCGAATACCTCGCCGCCTGT
CGACCCATGTGCTTCTCCATGGGTAACGCCATTCGTTGGCTCAAGCTGCAAATCAGCAAGTTGGATATTGACCTG
CCGGACTCGGACGCCAAGAAATACCTCTGTGCGCTCATCGACAGCTTCATCAGCGAACGCATCACCCTCGCCGAC
TTCGTCATCGTCAACACGGCGGCCGAAAAGGTTTCCGACGGGGACGTCGTCGTCGTCTACGGTCATCATCATCTC
GTCCAACGTACCCTCCTTCGCGCCCGCTCCGACGGTCGAAAGTTTAGAGTCGTCGTCGTCGACGACGCCTTCCAA
CGGGTCGGCTACCAACTCGCAAAGGCTCTAGCCGCCGCCGAGATAGCCGTGAGCTACGTTTCCGATCTCGGCGCC
TTACGGACGACGCTCGCTCGCGCTACCTTGGTCATGACGGCCGCCGAGGCCATGTTCAGCAACGGCGCCATGTAC
GCCCGCGCCGGCACCTGCGACGTCGCCACCGTCGCGGCTGATGTTGGACTCGCCGTCGTCGTCCTCTGCGAGACT
ATCAACTTTACCGACCGTGTTGCCATCGACTCTCTCACCTATAACGAGATCGACCCGGAGAGCTGTGATGACGAG
GGCTTTCGTCTACTCTTCGATACTACCATGCATCGCTACATCTCCGTCGTCGTCACGGAGCTCGGCACGACTTCG
GCCAAGTCGGTACCGGCCATCCTGCGGAAACTGGAGGAGCTGTGA
Gene >Ophio5|2575
ATGGCTGGCGAGACTGGCCAGCCGGCGGGCGACGGCGCCGACAAGAAGCGAAAGAAGGAGGGTCAAAAACAGGAT
GCCACAGCGAACGAAGCATCGCCCAACAAGGACAAGAAACTCTCCAACGCAGAGCTCAAGAAAAAGGCAAAGGAG
GACAAGGCGGCGAGACGAGCAGCAGCCAAATCAAGCCAGCCGTCCCAACCAGCAGCCGCCCCTCAGCTGCAACCA
CCGACGCCGTCCGGCAGCGAGGCAAAAACCAGCGTCGCCTCCGCCGCTTCCAGGGCTCGGCCCAAGTCGCATCAC
GATGGTGGTGGTGGCGGCACCCGCCCGCCCAAGCCCAAGATGCCCGAGTGCTTCAGCCACCTGTCGATGGCGCGG
CGCTTGACGCTCACGCAGGCTGACAAGGACGTCCATCCTACCGTGTTGGCGTTGGGGCAGCAAATGGGCTGCTTT
GCTCTTGGTGATAGCATCACCAGGCTCGAGGCTACTCTTATGGCCTTTAAAAAGGTTGCCCACACACACACACAT
AATTTGCCGAGACAGAATGGGCCCTCGCTAACGTCGTCGTCGTCTCATCATCGTCCACACAGGTCATCGATGCCT
ACACGACGCCCCATGGCGCAACCTTCTCTCGACACTTTACGTCGCACGTCCTCAATCCTCAGATCGAATACCTCG
CCGCCTGTCGACCCATGTGCTTCTCCATGGGTAACGCCATTCGTTGGCTCAAGCTGCAAATCAGCAAGTTGGATA
TTGACCTGCCGGACTCGGACGCCAAGAAATACCTCTGTGCGCTCATCGACAGCTTCATCAGCGAACGCATCACCC
TCGCCGACTTCGTCATCGTCAACACGGCGGCCGAAAAGGTTTCCGACGGGGACGTCGTCGTCGTCTACGGTCATC
ATCATCTCGTCCAACGTACCCTCCTTCGCGCCCGCTCCGACGGTCGAAAGTTTAGAGTCGTCGTCGTCGACGACG
CCTTCCAACGGGTCGGCTACCAACTCGCAAAGGCTCTAGCCGCCGCCGAGATAGCCGTGAGCTACGTTTCCGATC
TCGGCGCCTTACGGACGACGCTCGCTCGCGCTACCTTGGTCATGACGGCCGCCGAGGCCATGTTCAGCAACGGCG
CCATGTACGCCCGCGCCGGCACCTGCGACGTCGCCACCGTCGCGGCTGATGTTGGACTCGCCGTCGTCGTCCTCT
GCGAGACTATCAACTTTACCGACCGTGTTGCCATCGACTCTCTCACCTATAACGAGATCGACCCGGAGAGCTGTG
ATGACGAGGGCTTTCGTCTACTCTTCGATACTACCATGCATCGCTACATCTCCGTCGTCGTCACGGAGCTCGGCA
CGACTTCGGCCAAGTCGGTACCGGCCATCCTGCGGAAACTGGAGGAGCTGTGA

© 2022 - Robin Ohm - Utrecht University - The Netherlands

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