© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Ophio5|2571 |
| Gene name | |
| Location | scaffold_21:72276..73887 |
| Strand | - |
| Gene length (bp) | 1611 |
| Transcript length (bp) | 1551 |
| Coding sequence length (bp) | 1548 |
| Protein length (aa) | 516 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF10510 | PIG-S | Phosphatidylinositol-glycan biosynthesis class S protein | 2.3E-154 | 41 | 497 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|Q10351|PIGS_SCHPO | GPI transamidase component PIG-S homolog OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=gpi17 PE=3 SV=1 | 27 | 500 | 1.0E-42 |
| sp|Q04080|GPI17_YEAST | GPI transamidase component GPI17 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=GPI17 PE=1 SV=1 | 30 | 511 | 1.0E-35 |
| sp|Q5XI31|PIGS_RAT | GPI transamidase component PIG-S OS=Rattus norvegicus GN=Pigs PE=2 SV=3 | 204 | 490 | 5.0E-18 |
| sp|Q3SZL5|PIGS_BOVIN | GPI transamidase component PIG-S OS=Bos taurus GN=PIGS PE=2 SV=3 | 217 | 488 | 5.0E-18 |
| sp|Q96S52|PIGS_HUMAN | GPI transamidase component PIG-S OS=Homo sapiens GN=PIGS PE=1 SV=3 | 204 | 498 | 2.0E-17 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|Q10351|PIGS_SCHPO | GPI transamidase component PIG-S homolog OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=gpi17 PE=3 SV=1 | 27 | 500 | 1.0E-42 |
| sp|Q04080|GPI17_YEAST | GPI transamidase component GPI17 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=GPI17 PE=1 SV=1 | 30 | 511 | 1.0E-35 |
| sp|Q5XI31|PIGS_RAT | GPI transamidase component PIG-S OS=Rattus norvegicus GN=Pigs PE=2 SV=3 | 204 | 490 | 5.0E-18 |
| sp|Q3SZL5|PIGS_BOVIN | GPI transamidase component PIG-S OS=Bos taurus GN=PIGS PE=2 SV=3 | 217 | 488 | 5.0E-18 |
| sp|Q96S52|PIGS_HUMAN | GPI transamidase component PIG-S OS=Homo sapiens GN=PIGS PE=1 SV=3 | 204 | 498 | 2.0E-17 |
| sp|Q6PD26|PIGS_MOUSE | GPI transamidase component PIG-S OS=Mus musculus GN=Pigs PE=1 SV=3 | 204 | 490 | 2.0E-15 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0042765 | GPI-anchor transamidase complex | Yes |
| GO:0016255 | attachment of GPI anchor to protein | Yes |
| GO:0008152 | metabolic process | No |
| GO:0043170 | macromolecule metabolic process | No |
| GO:0008150 | biological_process | No |
| GO:1901564 | organonitrogen compound metabolic process | No |
| GO:0032991 | protein-containing complex | No |
| GO:0044238 | primary metabolic process | No |
| GO:1905369 | endopeptidase complex | No |
| GO:1902494 | catalytic complex | No |
| GO:0043412 | macromolecule modification | No |
| GO:0098796 | membrane protein complex | No |
| GO:1905368 | peptidase complex | No |
| GO:0071704 | organic substance metabolic process | No |
| GO:0019538 | protein metabolic process | No |
| GO:0005575 | cellular_component | No |
| GO:0008303 | caspase complex | No |
| GO:0036211 | protein modification process | No |
| GO:0006807 | nitrogen compound metabolic process | No |
| GO:0140534 | endoplasmic reticulum protein-containing complex | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 38 | 0.5 |
| Domain # | Start | End | Length |
|---|---|---|---|
| 1 | 38 | 60 | 22 |
| 2 | 470 | 489 | 19 |
Expression values
| Label | Description | Expression (RPKM) | Confidence interval (low) | Confidence interval (high) |
|---|---|---|---|---|
| SC16a | Pure fungal culture | 86.10 | 46.84 | 125.35 |
| CcL | In ants, during behavior modification | 136.53 | 70.92 | 202.14 |
| CcD | In ants, recently dead | 110.20 | 58.78 | 161.61 |
Differential expression
| Label1 | Label2 | Q-value | Significant difference |
|---|---|---|---|
| SC16a | CcL | 0.045532 | yes |
| SC16a | CcD | 0.307222 | no |
| CcL | CcD | 0.400631 | no |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Ophio5|2571 MASEEEEEMTAMMASNHQHLPKQPPPEKPSDSRKRFHIVLSFWFIVVVLGLPIWWRTTTIYRAKLPLDRMLQWAE GKACRPAFPLQIAVSAPSLARAEAQHLIRLTQHALDDLDDFSGHHLRLQLDGESEPVPEPALTVRLSPGDANAAR IDPEATALDMTYAPGAVPPPSAGSSALASWIAGELRSTFAEEQAIISHLLSPSSGRAAKSLRYAPTYHLTLSLFT GGAAPSTWDVEEAVRHYLRPALDVLRPMHNFTVDTQVQLYATPGAQAPVLAKEHLASFINAAEWPLSPSIGGAPT VNFVVFVGNQTIGLEQGDKTTAQSWTIPQWGSVYLLALPSTASHVSRELLRLPMLTFAGQLLTLLGTPRRGSLPL RLSALGRIRSTDLLLRASSSLGALARLARALPSISIPRSVAEGVSTTLDHLELACAGLGGPEGLRHARIAEEAAE RAFFEKSMVGQLYFPDEHKIAVYLPLLGPVGVPLVLGLVNEAKRRLRRRRAQAEEAERKKKADKSQ |
| Coding | >Ophio5|2571 ATGGCCTCGGAAGAAGAGGAAGAAATGACGGCCATGATGGCTTCGAATCATCAACATCTCCCAAAGCAGCCTCCC CCCGAAAAACCATCAGACAGCCGCAAGCGCTTCCACATCGTCCTCTCCTTCTGGTTCATCGTCGTCGTCCTCGGT CTGCCCATCTGGTGGCGTACCACGACCATATATCGCGCCAAGCTGCCACTGGATCGCATGCTGCAATGGGCTGAG GGCAAGGCTTGCCGACCGGCATTCCCCTTGCAGATTGCCGTGAGCGCGCCATCGCTGGCCCGAGCCGAGGCGCAG CATCTTATCCGGTTGACGCAACACGCGCTCGACGATCTCGACGACTTCTCGGGTCATCATCTGCGGTTACAGCTT GATGGCGAGTCTGAGCCCGTGCCCGAGCCCGCGCTGACCGTGCGTCTGTCACCCGGTGACGCCAATGCGGCACGG ATAGACCCGGAAGCCACAGCACTCGACATGACTTACGCACCCGGAGCGGTGCCGCCACCTTCGGCCGGCTCCTCG GCGCTGGCGTCGTGGATCGCCGGTGAGTTGCGGTCCACTTTCGCCGAAGAGCAGGCCATCATATCCCACCTCTTG TCGCCCTCGTCGGGAAGGGCTGCCAAGTCGCTGCGCTACGCGCCTACATACCACCTGACTCTCTCCCTCTTCACC GGCGGCGCCGCGCCTAGCACGTGGGACGTGGAGGAGGCGGTGCGTCACTACCTGCGTCCGGCCCTCGACGTGCTT CGGCCCATGCACAACTTCACCGTCGACACCCAGGTGCAGCTGTACGCAACGCCCGGGGCCCAGGCTCCGGTGCTG GCCAAGGAGCATCTGGCTTCGTTTATCAACGCGGCCGAGTGGCCACTGTCACCCTCCATCGGCGGAGCGCCCACT GTCAACTTTGTCGTCTTTGTCGGGAACCAGACTATCGGGCTCGAGCAGGGCGATAAGACGACGGCCCAGTCTTGG ACCATCCCGCAATGGGGAAGCGTCTACCTTCTGGCCCTGCCCTCGACCGCCAGCCACGTCTCGCGCGAGCTCTTG CGGCTGCCCATGCTGACCTTTGCCGGCCAGCTGCTGACTTTACTCGGCACGCCACGTCGAGGATCGCTGCCGCTG CGGTTGTCTGCTCTGGGCCGGATCCGATCGACGGACCTGCTGCTGCGGGCGTCTTCTTCGCTGGGCGCCTTGGCC CGTCTGGCCCGCGCTCTTCCGTCCATCTCGATACCGCGCAGCGTGGCCGAGGGCGTCTCGACGACGCTCGACCAC CTGGAGCTGGCCTGCGCCGGCCTAGGCGGTCCTGAGGGTCTGCGCCACGCCCGCATCGCCGAGGAGGCGGCCGAG CGCGCCTTTTTCGAGAAGAGCATGGTCGGCCAGCTGTACTTTCCGGACGAACATAAGATCGCCGTCTATCTGCCG CTGCTGGGACCCGTCGGTGTGCCGCTTGTGCTGGGGCTGGTCAATGAGGCCAAGAGGAGGCTGCGGAGGAGGCGG GCCCAGGCGGAGGAGGCGGAGAGGAAGAAGAAGGCGGACAAGAGTCAG |
| Transcript | >Ophio5|2571 ATGGCCTCGGAAGAAGAGGAAGAAATGACGGCCATGATGGCTTCGAATCATCAACATCTCCCAAAGCAGCCTCCC CCCGAAAAACCATCAGACAGCCGCAAGCGCTTCCACATCGTCCTCTCCTTCTGGTTCATCGTCGTCGTCCTCGGT CTGCCCATCTGGTGGCGTACCACGACCATATATCGCGCCAAGCTGCCACTGGATCGCATGCTGCAATGGGCTGAG GGCAAGGCTTGCCGACCGGCATTCCCCTTGCAGATTGCCGTGAGCGCGCCATCGCTGGCCCGAGCCGAGGCGCAG CATCTTATCCGGTTGACGCAACACGCGCTCGACGATCTCGACGACTTCTCGGGTCATCATCTGCGGTTACAGCTT GATGGCGAGTCTGAGCCCGTGCCCGAGCCCGCGCTGACCGTGCGTCTGTCACCCGGTGACGCCAATGCGGCACGG ATAGACCCGGAAGCCACAGCACTCGACATGACTTACGCACCCGGAGCGGTGCCGCCACCTTCGGCCGGCTCCTCG GCGCTGGCGTCGTGGATCGCCGGTGAGTTGCGGTCCACTTTCGCCGAAGAGCAGGCCATCATATCCCACCTCTTG TCGCCCTCGTCGGGAAGGGCTGCCAAGTCGCTGCGCTACGCGCCTACATACCACCTGACTCTCTCCCTCTTCACC GGCGGCGCCGCGCCTAGCACGTGGGACGTGGAGGAGGCGGTGCGTCACTACCTGCGTCCGGCCCTCGACGTGCTT CGGCCCATGCACAACTTCACCGTCGACACCCAGGTGCAGCTGTACGCAACGCCCGGGGCCCAGGCTCCGGTGCTG GCCAAGGAGCATCTGGCTTCGTTTATCAACGCGGCCGAGTGGCCACTGTCACCCTCCATCGGCGGAGCGCCCACT GTCAACTTTGTCGTCTTTGTCGGGAACCAGACTATCGGGCTCGAGCAGGGCGATAAGACGACGGCCCAGTCTTGG ACCATCCCGCAATGGGGAAGCGTCTACCTTCTGGCCCTGCCCTCGACCGCCAGCCACGTCTCGCGCGAGCTCTTG CGGCTGCCCATGCTGACCTTTGCCGGCCAGCTGCTGACTTTACTCGGCACGCCACGTCGAGGATCGCTGCCGCTG CGGTTGTCTGCTCTGGGCCGGATCCGATCGACGGACCTGCTGCTGCGGGCGTCTTCTTCGCTGGGCGCCTTGGCC CGTCTGGCCCGCGCTCTTCCGTCCATCTCGATACCGCGCAGCGTGGCCGAGGGCGTCTCGACGACGCTCGACCAC CTGGAGCTGGCCTGCGCCGGCCTAGGCGGTCCTGAGGGTCTGCGCCACGCCCGCATCGCCGAGGAGGCGGCCGAG CGCGCCTTTTTCGAGAAGAGCATGGTCGGCCAGCTGTACTTTCCGGACGAACATAAGATCGCCGTCTATCTGCCG CTGCTGGGACCCGTCGGTGTGCCGCTTGTGCTGGGGCTGGTCAATGAGGCCAAGAGGAGGCTGCGGAGGAGGCGG GCCCAGGCGGAGGAGGCGGAGAGGAAGAAGAAGGCGGACAAGAGTCAGTGA |
| Gene | >Ophio5|2571 ATGGCCTCGGAAGAAGAGGAAGAAATGACGGCCATGATGGCTTCGAATCATCAACATCTCCCAAAGCAGCCTCCC CCCGAAAAACCATCAGACAGCCGCAAGCGCTTCCACATCGTCCTCTCCTTCTGGTTCATCGTCGTCGTCCTCGGT CTGCCCATCTGGTGGCGTACCACGACCATATATCGCGCCAAGCTGCCACTGGATCGCATGCTGCAATGGGCTGAG GGCAAGGCGCGTTCTGCCCTACTCTGCTCTGCCCGTCCATCAGTATCGGCTGACACACACTTCCAGGCTTGCCGA CCGGCATTCCCCTTGCAGATTGCCGTGAGCGCGCCATCGCTGGCCCGAGCCGAGGCGCAGCATCTTATCCGGTTG ACGCAACACGCGCTCGACGATCTCGACGACTTCTCGGGTCATCATCTGCGGTTACAGCTTGATGGCGAGTCTGAG CCCGTGCCCGAGCCCGCGCTGACCGTGCGTCTGTCACCCGGTGACGCCAATGCGGCACGGATAGACCCGGAAGCC ACAGCACTCGACATGACTTACGCACCCGGAGCGGTGCCGCCACCTTCGGCCGGCTCCTCGGCGCTGGCGTCGTGG ATCGCCGGTGAGTTGCGGTCCACTTTCGCCGAAGAGCAGGCCATCATATCCCACCTCTTGTCGCCCTCGTCGGGA AGGGCTGCCAAGTCGCTGCGCTACGCGCCTACATACCACCTGACTCTCTCCCTCTTCACCGGCGGCGCCGCGCCT AGCACGTGGGACGTGGAGGAGGCGGTGCGTCACTACCTGCGTCCGGCCCTCGACGTGCTTCGGCCCATGCACAAC TTCACCGTCGACACCCAGGTGCAGCTGTACGCAACGCCCGGGGCCCAGGCTCCGGTGCTGGCCAAGGAGCATCTG GCTTCGTTTATCAACGCGGCCGAGTGGCCACTGTCACCCTCCATCGGCGGAGCGCCCACTGTCAACTTTGTCGTC TTTGTCGGGAACCAGACTATCGGGCTCGAGCAGGGCGATAAGACGACGGCCCAGTCTTGGACCATCCCGCAATGG GGAAGCGTCTACCTTCTGGCCCTGCCCTCGACCGCCAGCCACGTCTCGCGCGAGCTCTTGCGGCTGCCCATGCTG ACCTTTGCCGGCCAGCTGCTGACTTTACTCGGCACGCCACGTCGAGGATCGCTGCCGCTGCGGTTGTCTGCTCTG GGCCGGATCCGATCGACGGACCTGCTGCTGCGGGCGTCTTCTTCGCTGGGCGCCTTGGCCCGTCTGGCCCGCGCT CTTCCGTCCATCTCGATACCGCGCAGCGTGGCCGAGGGCGTCTCGACGACGCTCGACCACCTGGAGCTGGCCTGC GCCGGCCTAGGCGGTCCTGAGGGTCTGCGCCACGCCCGCATCGCCGAGGAGGCGGCCGAGCGCGCCTTTTTCGAG AAGAGCATGGTCGGCCAGCTGTACTTTCCGGACGAACATAAGATCGCCGTCTATCTGCCGCTGCTGGGACCCGTC GGTGTGCCGCTTGTGCTGGGGCTGGTCAATGAGGCCAAGAGGAGGCTGCGGAGGAGGCGGGCCCAGGCGGAGGAG GCGGAGAGGAAGAAGAAGGCGGACAAGAGTCAGTGA |