Fungal Genomics

at Utrecht University

General Properties

Protein IDOphio5|2571
Gene name
Locationscaffold_21:72276..73887
Strand-
Gene length (bp)1611
Transcript length (bp)1551
Coding sequence length (bp)1548
Protein length (aa) 516

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PFAM Domains

PFAM Domain ID Short name Long name E-value Start End
PF10510 PIG-S Phosphatidylinositol-glycan biosynthesis class S protein 2.3E-154 41 497

Swissprot hits

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Swissprot ID Swissprot Description Start End E-value
sp|Q10351|PIGS_SCHPO GPI transamidase component PIG-S homolog OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=gpi17 PE=3 SV=1 27 500 1.0E-42
sp|Q04080|GPI17_YEAST GPI transamidase component GPI17 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=GPI17 PE=1 SV=1 30 511 1.0E-35
sp|Q5XI31|PIGS_RAT GPI transamidase component PIG-S OS=Rattus norvegicus GN=Pigs PE=2 SV=3 204 490 5.0E-18
sp|Q3SZL5|PIGS_BOVIN GPI transamidase component PIG-S OS=Bos taurus GN=PIGS PE=2 SV=3 217 488 5.0E-18
sp|Q96S52|PIGS_HUMAN GPI transamidase component PIG-S OS=Homo sapiens GN=PIGS PE=1 SV=3 204 498 2.0E-17
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Swissprot ID Swissprot Description Start End E-value
sp|Q10351|PIGS_SCHPO GPI transamidase component PIG-S homolog OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=gpi17 PE=3 SV=1 27 500 1.0E-42
sp|Q04080|GPI17_YEAST GPI transamidase component GPI17 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=GPI17 PE=1 SV=1 30 511 1.0E-35
sp|Q5XI31|PIGS_RAT GPI transamidase component PIG-S OS=Rattus norvegicus GN=Pigs PE=2 SV=3 204 490 5.0E-18
sp|Q3SZL5|PIGS_BOVIN GPI transamidase component PIG-S OS=Bos taurus GN=PIGS PE=2 SV=3 217 488 5.0E-18
sp|Q96S52|PIGS_HUMAN GPI transamidase component PIG-S OS=Homo sapiens GN=PIGS PE=1 SV=3 204 498 2.0E-17
sp|Q6PD26|PIGS_MOUSE GPI transamidase component PIG-S OS=Mus musculus GN=Pigs PE=1 SV=3 204 490 2.0E-15
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GO

GO Term Description Terminal node
GO:0042765 GPI-anchor transamidase complex Yes
GO:0016255 attachment of GPI anchor to protein Yes
GO:0008152 metabolic process No
GO:0043170 macromolecule metabolic process No
GO:0008150 biological_process No
GO:1901564 organonitrogen compound metabolic process No
GO:0032991 protein-containing complex No
GO:0044238 primary metabolic process No
GO:1905369 endopeptidase complex No
GO:1902494 catalytic complex No
GO:0043412 macromolecule modification No
GO:0098796 membrane protein complex No
GO:1905368 peptidase complex No
GO:0071704 organic substance metabolic process No
GO:0019538 protein metabolic process No
GO:0005575 cellular_component No
GO:0008303 caspase complex No
GO:0036211 protein modification process No
GO:0006807 nitrogen compound metabolic process No
GO:0140534 endoplasmic reticulum protein-containing complex No

SignalP

[Help with interpreting these statistics]
SignalP signal predicted Location
(based on Ymax)
D score
(significance: > 0.45)
No 1 - 38 0.5

Transmembrane Domains

Domain # Start End Length
1 38 60 22
2 470 489 19

Transcription Factor Class

(None)

Expression data

Analysis 1: Expression analysis during behavioral modification. Published in De Bekker et al., 2017.

Expression values

Label Description Expression (RPKM) Confidence interval (low) Confidence interval (high)
SC16a Pure fungal culture 86.10 46.84 125.35
CcL In ants, during behavior modification 136.53 70.92 202.14
CcD In ants, recently dead 110.20 58.78 161.61

Differential expression

Label1 Label2 Q-value Significant difference
SC16a CcL 0.045532 yes
SC16a CcD 0.307222 no
CcL CcD 0.400631 no

Sequences

Type of sequenceSequence
Locus Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein >Ophio5|2571
MASEEEEEMTAMMASNHQHLPKQPPPEKPSDSRKRFHIVLSFWFIVVVLGLPIWWRTTTIYRAKLPLDRMLQWAE
GKACRPAFPLQIAVSAPSLARAEAQHLIRLTQHALDDLDDFSGHHLRLQLDGESEPVPEPALTVRLSPGDANAAR
IDPEATALDMTYAPGAVPPPSAGSSALASWIAGELRSTFAEEQAIISHLLSPSSGRAAKSLRYAPTYHLTLSLFT
GGAAPSTWDVEEAVRHYLRPALDVLRPMHNFTVDTQVQLYATPGAQAPVLAKEHLASFINAAEWPLSPSIGGAPT
VNFVVFVGNQTIGLEQGDKTTAQSWTIPQWGSVYLLALPSTASHVSRELLRLPMLTFAGQLLTLLGTPRRGSLPL
RLSALGRIRSTDLLLRASSSLGALARLARALPSISIPRSVAEGVSTTLDHLELACAGLGGPEGLRHARIAEEAAE
RAFFEKSMVGQLYFPDEHKIAVYLPLLGPVGVPLVLGLVNEAKRRLRRRRAQAEEAERKKKADKSQ
Coding >Ophio5|2571
ATGGCCTCGGAAGAAGAGGAAGAAATGACGGCCATGATGGCTTCGAATCATCAACATCTCCCAAAGCAGCCTCCC
CCCGAAAAACCATCAGACAGCCGCAAGCGCTTCCACATCGTCCTCTCCTTCTGGTTCATCGTCGTCGTCCTCGGT
CTGCCCATCTGGTGGCGTACCACGACCATATATCGCGCCAAGCTGCCACTGGATCGCATGCTGCAATGGGCTGAG
GGCAAGGCTTGCCGACCGGCATTCCCCTTGCAGATTGCCGTGAGCGCGCCATCGCTGGCCCGAGCCGAGGCGCAG
CATCTTATCCGGTTGACGCAACACGCGCTCGACGATCTCGACGACTTCTCGGGTCATCATCTGCGGTTACAGCTT
GATGGCGAGTCTGAGCCCGTGCCCGAGCCCGCGCTGACCGTGCGTCTGTCACCCGGTGACGCCAATGCGGCACGG
ATAGACCCGGAAGCCACAGCACTCGACATGACTTACGCACCCGGAGCGGTGCCGCCACCTTCGGCCGGCTCCTCG
GCGCTGGCGTCGTGGATCGCCGGTGAGTTGCGGTCCACTTTCGCCGAAGAGCAGGCCATCATATCCCACCTCTTG
TCGCCCTCGTCGGGAAGGGCTGCCAAGTCGCTGCGCTACGCGCCTACATACCACCTGACTCTCTCCCTCTTCACC
GGCGGCGCCGCGCCTAGCACGTGGGACGTGGAGGAGGCGGTGCGTCACTACCTGCGTCCGGCCCTCGACGTGCTT
CGGCCCATGCACAACTTCACCGTCGACACCCAGGTGCAGCTGTACGCAACGCCCGGGGCCCAGGCTCCGGTGCTG
GCCAAGGAGCATCTGGCTTCGTTTATCAACGCGGCCGAGTGGCCACTGTCACCCTCCATCGGCGGAGCGCCCACT
GTCAACTTTGTCGTCTTTGTCGGGAACCAGACTATCGGGCTCGAGCAGGGCGATAAGACGACGGCCCAGTCTTGG
ACCATCCCGCAATGGGGAAGCGTCTACCTTCTGGCCCTGCCCTCGACCGCCAGCCACGTCTCGCGCGAGCTCTTG
CGGCTGCCCATGCTGACCTTTGCCGGCCAGCTGCTGACTTTACTCGGCACGCCACGTCGAGGATCGCTGCCGCTG
CGGTTGTCTGCTCTGGGCCGGATCCGATCGACGGACCTGCTGCTGCGGGCGTCTTCTTCGCTGGGCGCCTTGGCC
CGTCTGGCCCGCGCTCTTCCGTCCATCTCGATACCGCGCAGCGTGGCCGAGGGCGTCTCGACGACGCTCGACCAC
CTGGAGCTGGCCTGCGCCGGCCTAGGCGGTCCTGAGGGTCTGCGCCACGCCCGCATCGCCGAGGAGGCGGCCGAG
CGCGCCTTTTTCGAGAAGAGCATGGTCGGCCAGCTGTACTTTCCGGACGAACATAAGATCGCCGTCTATCTGCCG
CTGCTGGGACCCGTCGGTGTGCCGCTTGTGCTGGGGCTGGTCAATGAGGCCAAGAGGAGGCTGCGGAGGAGGCGG
GCCCAGGCGGAGGAGGCGGAGAGGAAGAAGAAGGCGGACAAGAGTCAG
Transcript >Ophio5|2571
ATGGCCTCGGAAGAAGAGGAAGAAATGACGGCCATGATGGCTTCGAATCATCAACATCTCCCAAAGCAGCCTCCC
CCCGAAAAACCATCAGACAGCCGCAAGCGCTTCCACATCGTCCTCTCCTTCTGGTTCATCGTCGTCGTCCTCGGT
CTGCCCATCTGGTGGCGTACCACGACCATATATCGCGCCAAGCTGCCACTGGATCGCATGCTGCAATGGGCTGAG
GGCAAGGCTTGCCGACCGGCATTCCCCTTGCAGATTGCCGTGAGCGCGCCATCGCTGGCCCGAGCCGAGGCGCAG
CATCTTATCCGGTTGACGCAACACGCGCTCGACGATCTCGACGACTTCTCGGGTCATCATCTGCGGTTACAGCTT
GATGGCGAGTCTGAGCCCGTGCCCGAGCCCGCGCTGACCGTGCGTCTGTCACCCGGTGACGCCAATGCGGCACGG
ATAGACCCGGAAGCCACAGCACTCGACATGACTTACGCACCCGGAGCGGTGCCGCCACCTTCGGCCGGCTCCTCG
GCGCTGGCGTCGTGGATCGCCGGTGAGTTGCGGTCCACTTTCGCCGAAGAGCAGGCCATCATATCCCACCTCTTG
TCGCCCTCGTCGGGAAGGGCTGCCAAGTCGCTGCGCTACGCGCCTACATACCACCTGACTCTCTCCCTCTTCACC
GGCGGCGCCGCGCCTAGCACGTGGGACGTGGAGGAGGCGGTGCGTCACTACCTGCGTCCGGCCCTCGACGTGCTT
CGGCCCATGCACAACTTCACCGTCGACACCCAGGTGCAGCTGTACGCAACGCCCGGGGCCCAGGCTCCGGTGCTG
GCCAAGGAGCATCTGGCTTCGTTTATCAACGCGGCCGAGTGGCCACTGTCACCCTCCATCGGCGGAGCGCCCACT
GTCAACTTTGTCGTCTTTGTCGGGAACCAGACTATCGGGCTCGAGCAGGGCGATAAGACGACGGCCCAGTCTTGG
ACCATCCCGCAATGGGGAAGCGTCTACCTTCTGGCCCTGCCCTCGACCGCCAGCCACGTCTCGCGCGAGCTCTTG
CGGCTGCCCATGCTGACCTTTGCCGGCCAGCTGCTGACTTTACTCGGCACGCCACGTCGAGGATCGCTGCCGCTG
CGGTTGTCTGCTCTGGGCCGGATCCGATCGACGGACCTGCTGCTGCGGGCGTCTTCTTCGCTGGGCGCCTTGGCC
CGTCTGGCCCGCGCTCTTCCGTCCATCTCGATACCGCGCAGCGTGGCCGAGGGCGTCTCGACGACGCTCGACCAC
CTGGAGCTGGCCTGCGCCGGCCTAGGCGGTCCTGAGGGTCTGCGCCACGCCCGCATCGCCGAGGAGGCGGCCGAG
CGCGCCTTTTTCGAGAAGAGCATGGTCGGCCAGCTGTACTTTCCGGACGAACATAAGATCGCCGTCTATCTGCCG
CTGCTGGGACCCGTCGGTGTGCCGCTTGTGCTGGGGCTGGTCAATGAGGCCAAGAGGAGGCTGCGGAGGAGGCGG
GCCCAGGCGGAGGAGGCGGAGAGGAAGAAGAAGGCGGACAAGAGTCAGTGA
Gene >Ophio5|2571
ATGGCCTCGGAAGAAGAGGAAGAAATGACGGCCATGATGGCTTCGAATCATCAACATCTCCCAAAGCAGCCTCCC
CCCGAAAAACCATCAGACAGCCGCAAGCGCTTCCACATCGTCCTCTCCTTCTGGTTCATCGTCGTCGTCCTCGGT
CTGCCCATCTGGTGGCGTACCACGACCATATATCGCGCCAAGCTGCCACTGGATCGCATGCTGCAATGGGCTGAG
GGCAAGGCGCGTTCTGCCCTACTCTGCTCTGCCCGTCCATCAGTATCGGCTGACACACACTTCCAGGCTTGCCGA
CCGGCATTCCCCTTGCAGATTGCCGTGAGCGCGCCATCGCTGGCCCGAGCCGAGGCGCAGCATCTTATCCGGTTG
ACGCAACACGCGCTCGACGATCTCGACGACTTCTCGGGTCATCATCTGCGGTTACAGCTTGATGGCGAGTCTGAG
CCCGTGCCCGAGCCCGCGCTGACCGTGCGTCTGTCACCCGGTGACGCCAATGCGGCACGGATAGACCCGGAAGCC
ACAGCACTCGACATGACTTACGCACCCGGAGCGGTGCCGCCACCTTCGGCCGGCTCCTCGGCGCTGGCGTCGTGG
ATCGCCGGTGAGTTGCGGTCCACTTTCGCCGAAGAGCAGGCCATCATATCCCACCTCTTGTCGCCCTCGTCGGGA
AGGGCTGCCAAGTCGCTGCGCTACGCGCCTACATACCACCTGACTCTCTCCCTCTTCACCGGCGGCGCCGCGCCT
AGCACGTGGGACGTGGAGGAGGCGGTGCGTCACTACCTGCGTCCGGCCCTCGACGTGCTTCGGCCCATGCACAAC
TTCACCGTCGACACCCAGGTGCAGCTGTACGCAACGCCCGGGGCCCAGGCTCCGGTGCTGGCCAAGGAGCATCTG
GCTTCGTTTATCAACGCGGCCGAGTGGCCACTGTCACCCTCCATCGGCGGAGCGCCCACTGTCAACTTTGTCGTC
TTTGTCGGGAACCAGACTATCGGGCTCGAGCAGGGCGATAAGACGACGGCCCAGTCTTGGACCATCCCGCAATGG
GGAAGCGTCTACCTTCTGGCCCTGCCCTCGACCGCCAGCCACGTCTCGCGCGAGCTCTTGCGGCTGCCCATGCTG
ACCTTTGCCGGCCAGCTGCTGACTTTACTCGGCACGCCACGTCGAGGATCGCTGCCGCTGCGGTTGTCTGCTCTG
GGCCGGATCCGATCGACGGACCTGCTGCTGCGGGCGTCTTCTTCGCTGGGCGCCTTGGCCCGTCTGGCCCGCGCT
CTTCCGTCCATCTCGATACCGCGCAGCGTGGCCGAGGGCGTCTCGACGACGCTCGACCACCTGGAGCTGGCCTGC
GCCGGCCTAGGCGGTCCTGAGGGTCTGCGCCACGCCCGCATCGCCGAGGAGGCGGCCGAGCGCGCCTTTTTCGAG
AAGAGCATGGTCGGCCAGCTGTACTTTCCGGACGAACATAAGATCGCCGTCTATCTGCCGCTGCTGGGACCCGTC
GGTGTGCCGCTTGTGCTGGGGCTGGTCAATGAGGCCAAGAGGAGGCTGCGGAGGAGGCGGGCCCAGGCGGAGGAG
GCGGAGAGGAAGAAGAAGGCGGACAAGAGTCAGTGA

© 2022 - Robin Ohm - Utrecht University - The Netherlands

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