© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Ophio5|2564 |
| Gene name | |
| Location | scaffold_21:59648..61600 |
| Strand | + |
| Gene length (bp) | 1952 |
| Transcript length (bp) | 1608 |
| Coding sequence length (bp) | 1605 |
| Protein length (aa) | 535 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF13520 | AA_permease_2 | Amino acid permease | 5.4E-53 | 49 | 508 |
| PF00324 | AA_permease | Amino acid permease | 3.0E-23 | 60 | 449 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|P19807|HNM1_YEAST | Choline transport protein OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=HNM1 PE=1 SV=1 | 7 | 531 | 4.0E-67 |
| sp|O74537|YCQ4_SCHPO | Uncharacterized amino-acid permease C74.04 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPCC74.04 PE=3 SV=1 | 22 | 534 | 1.0E-42 |
| sp|O60113|YG64_SCHPO | Uncharacterized amino-acid permease C15C4.04c OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPBC15C4.04c PE=3 SV=1 | 20 | 524 | 4.0E-42 |
| sp|Q09887|YC9D_SCHPO | Uncharacterized amino-acid permease C584.13 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPCC584.13 PE=3 SV=1 | 32 | 523 | 1.0E-41 |
| sp|Q9ZU50|BAT1_ARATH | Amino-acid permease BAT1 OS=Arabidopsis thaliana GN=BAT1 PE=2 SV=2 | 36 | 520 | 3.0E-39 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|P19807|HNM1_YEAST | Choline transport protein OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=HNM1 PE=1 SV=1 | 7 | 531 | 4.0E-67 |
| sp|O74537|YCQ4_SCHPO | Uncharacterized amino-acid permease C74.04 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPCC74.04 PE=3 SV=1 | 22 | 534 | 1.0E-42 |
| sp|O60113|YG64_SCHPO | Uncharacterized amino-acid permease C15C4.04c OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPBC15C4.04c PE=3 SV=1 | 20 | 524 | 4.0E-42 |
| sp|Q09887|YC9D_SCHPO | Uncharacterized amino-acid permease C584.13 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPCC584.13 PE=3 SV=1 | 32 | 523 | 1.0E-41 |
| sp|Q9ZU50|BAT1_ARATH | Amino-acid permease BAT1 OS=Arabidopsis thaliana GN=BAT1 PE=2 SV=2 | 36 | 520 | 3.0E-39 |
| sp|Q9US40|YFZ1_SCHPO | Uncharacterized amino-acid permease C1039.01 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPAC1039.01 PE=3 SV=1 | 8 | 529 | 4.0E-39 |
| sp|O59942|AAP2_NEUCR | Amino-acid permease 2 OS=Neurospora crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987) GN=aap-2 PE=2 SV=2 | 34 | 521 | 4.0E-38 |
| sp|B9EXZ6|BAT1_ORYSJ | Amino-acid permease BAT1 homolog OS=Oryza sativa subsp. japonica GN=BAT1 PE=2 SV=1 | 36 | 501 | 2.0E-36 |
| sp|P32837|UGA4_YEAST | GABA-specific permease OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=UGA4 PE=1 SV=1 | 23 | 521 | 4.0E-35 |
| sp|P36029|TPO5_YEAST | Polyamine transporter TPO5 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=TPO5 PE=1 SV=1 | 31 | 516 | 2.0E-31 |
| sp|Q10087|YAO8_SCHPO | Uncharacterized amino-acid permease C11D3.08c OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPAC11D3.08c PE=3 SV=1 | 12 | 519 | 4.0E-31 |
| sp|P53744|BIO5_YEAST | 7-keto 8-aminopelargonic acid transporter OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=BIO5 PE=1 SV=1 | 23 | 512 | 2.0E-30 |
| sp|O74248|GPT1_CANAX | Putative polyamine transporter OS=Candida albicans GN=GPT1 PE=3 SV=1 | 32 | 529 | 1.0E-26 |
| sp|Q9C0Z0|YKM2_SCHPO | Uncharacterized amino-acid permease PB24D3.02c OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPAPB24D3.02c PE=3 SV=1 | 31 | 519 | 1.0E-25 |
| sp|O59813|YCT3_SCHPO | Uncharacterized amino-acid permease C794.03 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPCC794.03 PE=2 SV=1 | 10 | 518 | 1.0E-24 |
| sp|Q9UT18|THI9_SCHPO | Thiamine transporter thi9 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=thi9 PE=1 SV=1 | 16 | 514 | 2.0E-24 |
| sp|P76037|PUUP_ECOLI | Putrescine importer PuuP OS=Escherichia coli (strain K12) GN=puuP PE=1 SV=2 | 274 | 425 | 3.0E-09 |
| sp|P0AA47|PLAP_ECOLI | Low-affinity putrescine importer PlaP OS=Escherichia coli (strain K12) GN=plaP PE=1 SV=1 | 274 | 418 | 9.0E-07 |
| sp|P0AA48|PLAP_ECO57 | Low-affinity putrescine importer PlaP OS=Escherichia coli O157:H7 GN=plaP PE=3 SV=1 | 274 | 418 | 9.0E-07 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0022857 | transmembrane transporter activity | Yes |
| GO:0016020 | membrane | Yes |
| GO:0055085 | transmembrane transport | Yes |
| GO:0009987 | cellular process | No |
| GO:0051234 | establishment of localization | No |
| GO:0110165 | cellular anatomical entity | No |
| GO:0008150 | biological_process | No |
| GO:0005215 | transporter activity | No |
| GO:0005575 | cellular_component | No |
| GO:0003674 | molecular_function | No |
| GO:0051179 | localization | No |
| GO:0006810 | transport | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 70 | 0.5 |
| Domain # | Start | End | Length |
|---|---|---|---|
| 1 | 49 | 68 | 19 |
| 2 | 83 | 105 | 22 |
| 3 | 130 | 152 | 22 |
| 4 | 181 | 203 | 22 |
| 5 | 215 | 237 | 22 |
| 6 | 257 | 279 | 22 |
| 7 | 300 | 322 | 22 |
| 8 | 349 | 371 | 22 |
| 9 | 404 | 426 | 22 |
| 10 | 430 | 452 | 22 |
| 11 | 465 | 487 | 22 |
| 12 | 502 | 519 | 17 |
Expression values
| Label | Description | Expression (RPKM) | Confidence interval (low) | Confidence interval (high) |
|---|---|---|---|---|
| SC16a | Pure fungal culture | 19.20 | 8.82 | 29.58 |
| CcL | In ants, during behavior modification | 170.34 | 69.47 | 271.21 |
| CcD | In ants, recently dead | 19.36 | 8.88 | 29.83 |
Differential expression
| Label1 | Label2 | Q-value | Significant difference |
|---|---|---|---|
| SC16a | CcL | 0.000286 | yes |
| SC16a | CcD | 0.981386 | no |
| CcL | CcD | 0.000286 | yes |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Ophio5|2564 MSSPSAVSPSEDNGAVVGDSRQDAALLQARRDAQDLADLGHDQALSRKFSLWSMLALALCVLGTWTTFAQGLSSG LVHGGPIAILWGLVLVALCNGCVAISLGELCSSMPTALGQADWISRLLSGRGARFASYLCAWLNTFGWWTLSASQ VAFMTDFILSMRLMFIQDDAAAAAARDALPGWQRFLVYLAVTLLFTLINVVSCRRESLLPIISNSVGVGFIGLFV AFVVALPVAVATRPGRHFQPASFVFAGWINRTGWPDGVTWFVGLVQSAYGLTAFDSVIHMAEEIPAPRRNVPRTM WLAVASGAVSGFVFMVVCLFCIQDVDRILSPTSGFPFIEISQSTLGRNAAAVLIGLFILNGLGQGFGILTSASRL TWSFARDGGLPLSQYWAHVDPRWRVPARALWLQASLIGLVGLLYLFASTVLQAVLSVSTIALTLSYAMPIAALLL AGRGALPSGQFRLGPRLGPIANGVSLVYCAITTVFFFFPGSPNPSPGDMNYAIAVFGVMVVVALAFWLLEGPRKR QSRRTAFVSV |
| Coding | >Ophio5|2564 ATGTCCTCTCCGTCTGCCGTCTCCCCCTCGGAAGACAATGGCGCCGTCGTCGGAGATTCTCGGCAAGATGCCGCC CTTCTCCAGGCCCGTCGCGACGCTCAAGACCTCGCCGACCTCGGCCACGATCAGGCCCTCAGCCGCAAGTTTAGC CTCTGGAGTATGCTCGCCCTCGCCCTCTGCGTCCTCGGCACCTGGACCACGTTTGCTCAGGGCCTCAGCAGCGGC CTCGTTCACGGCGGTCCCATCGCTATTCTTTGGGGCCTCGTCCTCGTCGCTCTGTGCAATGGCTGCGTCGCCATC TCTCTCGGGGAGCTGTGTAGCAGCATGCCGACGGCACTGGGACAGGCAGATTGGATATCGCGTCTTCTTAGTGGC CGTGGCGCCCGCTTCGCTTCCTATCTCTGCGCCTGGCTCAATACGTTTGGATGGTGGACGCTCAGTGCGTCACAG GTGGCCTTCATGACCGACTTTATCTTATCCATGCGCCTCATGTTCATCCAAGATGATGCCGCTGCTGCTGCTGCT AGAGACGCACTGCCCGGCTGGCAGCGGTTTCTCGTCTACCTGGCCGTCACGCTACTCTTCACTCTCATCAATGTC GTTTCATGCCGTCGCGAGTCGCTGCTACCCATCATCAGCAACTCTGTGGGCGTCGGCTTCATCGGCCTCTTCGTC GCCTTCGTCGTCGCACTGCCAGTCGCCGTCGCAACCCGTCCGGGCCGACATTTCCAGCCGGCCTCGTTTGTCTTC GCCGGCTGGATCAACCGCACGGGCTGGCCAGACGGCGTGACTTGGTTCGTCGGCCTCGTTCAGAGCGCCTACGGC TTGACGGCTTTCGACTCCGTCATCCACATGGCCGAGGAGATTCCCGCGCCTCGACGCAACGTTCCGCGCACAATG TGGCTGGCCGTCGCTTCCGGCGCCGTCTCCGGCTTCGTCTTCATGGTCGTCTGCCTTTTCTGCATCCAGGACGTC GATCGGATATTGTCCCCGACTTCGGGCTTCCCCTTTATCGAAATCAGCCAGTCGACGCTTGGTCGCAACGCCGCC GCCGTCCTCATTGGCCTTTTCATCCTCAACGGCCTCGGACAGGGTTTCGGCATCCTGACGTCTGCCTCTCGTCTG ACGTGGAGCTTCGCCCGCGATGGTGGCCTACCCCTGAGTCAGTACTGGGCACACGTCGACCCACGTTGGCGCGTG CCCGCCCGCGCCCTCTGGCTACAGGCGTCCCTCATCGGTCTCGTCGGCCTGCTGTACCTGTTCGCCAGCACGGTT CTACAGGCGGTGCTCAGCGTCAGCACCATTGCGCTGACGCTGTCGTATGCCATGCCCATCGCCGCCCTGCTGCTG GCCGGACGAGGGGCTCTTCCGTCGGGTCAGTTCCGGCTGGGCCCTCGACTGGGACCCATCGCCAATGGTGTCTCG CTCGTTTACTGCGCCATCACCACCGTCTTCTTCTTCTTTCCCGGCTCGCCGAACCCGTCACCCGGTGATATGAAC TACGCAATCGCCGTCTTTGGCGTCATGGTCGTCGTAGCCCTCGCCTTTTGGCTCCTCGAGGGGCCAAGAAAGAGG CAAAGCAGACGGACAGCCTTCGTCTCAGTA |
| Transcript | >Ophio5|2564 ATGTCCTCTCCGTCTGCCGTCTCCCCCTCGGAAGACAATGGCGCCGTCGTCGGAGATTCTCGGCAAGATGCCGCC CTTCTCCAGGCCCGTCGCGACGCTCAAGACCTCGCCGACCTCGGCCACGATCAGGCCCTCAGCCGCAAGTTTAGC CTCTGGAGTATGCTCGCCCTCGCCCTCTGCGTCCTCGGCACCTGGACCACGTTTGCTCAGGGCCTCAGCAGCGGC CTCGTTCACGGCGGTCCCATCGCTATTCTTTGGGGCCTCGTCCTCGTCGCTCTGTGCAATGGCTGCGTCGCCATC TCTCTCGGGGAGCTGTGTAGCAGCATGCCGACGGCACTGGGACAGGCAGATTGGATATCGCGTCTTCTTAGTGGC CGTGGCGCCCGCTTCGCTTCCTATCTCTGCGCCTGGCTCAATACGTTTGGATGGTGGACGCTCAGTGCGTCACAG GTGGCCTTCATGACCGACTTTATCTTATCCATGCGCCTCATGTTCATCCAAGATGATGCCGCTGCTGCTGCTGCT AGAGACGCACTGCCCGGCTGGCAGCGGTTTCTCGTCTACCTGGCCGTCACGCTACTCTTCACTCTCATCAATGTC GTTTCATGCCGTCGCGAGTCGCTGCTACCCATCATCAGCAACTCTGTGGGCGTCGGCTTCATCGGCCTCTTCGTC GCCTTCGTCGTCGCACTGCCAGTCGCCGTCGCAACCCGTCCGGGCCGACATTTCCAGCCGGCCTCGTTTGTCTTC GCCGGCTGGATCAACCGCACGGGCTGGCCAGACGGCGTGACTTGGTTCGTCGGCCTCGTTCAGAGCGCCTACGGC TTGACGGCTTTCGACTCCGTCATCCACATGGCCGAGGAGATTCCCGCGCCTCGACGCAACGTTCCGCGCACAATG TGGCTGGCCGTCGCTTCCGGCGCCGTCTCCGGCTTCGTCTTCATGGTCGTCTGCCTTTTCTGCATCCAGGACGTC GATCGGATATTGTCCCCGACTTCGGGCTTCCCCTTTATCGAAATCAGCCAGTCGACGCTTGGTCGCAACGCCGCC GCCGTCCTCATTGGCCTTTTCATCCTCAACGGCCTCGGACAGGGTTTCGGCATCCTGACGTCTGCCTCTCGTCTG ACGTGGAGCTTCGCCCGCGATGGTGGCCTACCCCTGAGTCAGTACTGGGCACACGTCGACCCACGTTGGCGCGTG CCCGCCCGCGCCCTCTGGCTACAGGCGTCCCTCATCGGTCTCGTCGGCCTGCTGTACCTGTTCGCCAGCACGGTT CTACAGGCGGTGCTCAGCGTCAGCACCATTGCGCTGACGCTGTCGTATGCCATGCCCATCGCCGCCCTGCTGCTG GCCGGACGAGGGGCTCTTCCGTCGGGTCAGTTCCGGCTGGGCCCTCGACTGGGACCCATCGCCAATGGTGTCTCG CTCGTTTACTGCGCCATCACCACCGTCTTCTTCTTCTTTCCCGGCTCGCCGAACCCGTCACCCGGTGATATGAAC TACGCAATCGCCGTCTTTGGCGTCATGGTCGTCGTAGCCCTCGCCTTTTGGCTCCTCGAGGGGCCAAGAAAGAGG CAAAGCAGACGGACAGCCTTCGTCTCAGTATAA |
| Gene | >Ophio5|2564 ATGTCCTCTCCGTCTGCCGTCTCCCCCTCGGAAGACAATGGCGCCGTCGTCGGAGATTCTCGGCAAGATGCCGCC CTTCTCCAGGCCCGTCGCGACGCTCAAGACCTCGCCGACCTCGGCCACGATCAGGCCCTCAGCCGCAAGTTTAGC CTCTGGAGTATGCTCGCCCTCGCCCTCTGCGTCCTCGGCACCTGGACCACGTTTGCTCAGGGCCTCAGCAGCGGC CTCGTTCACGGCGGTCCCATCGCTATTCTTTGGGGCCTCGTCCTCGTCGCTCTGTGCAATGGCTGCGTCGCCATC TCTCTCGGGGAGCTGTGTAGCAGCATGCCGACGGCACTGGGACAGGCAGATTGGATATCGCGTCTTCTTAGTGGC CGTGGCGCCCGCTTCGCTTCCTATCTCTGCGCCTGGCTCAATACGTTTGGATGGTGGACGCTCAGTGCGTCACAG GTGGCCTTCATGACCGACTTTATCTTATCCATGCGCCTCATGTTCATCCAAGATGATGCCGCTGCTGCTGCTGCT AGAGACGCACTGCCCGGCTGGCAGCGGTTTCTCGTCTACCTGGCCGTCACGCTACTCTTCACTCTCATCAATGTC GTTTCATGCCGTCGCGAGTCGCTGCTACCCATCATCAGCAACTCTGTGGGCGTCGGCTTCATCGGCCTCTTCGTC GCCTTCGTCGTCGCACTGCCAGTCGCCGTCGCAACCCGTCCGGGCCGACATTTCCAGCCGGCCTCGTTTGTCTTC GCCGGCTGGATCAACCGCACGGGCTGGCCAGACGGCGTGACTTGGTTCGTCGGCCTCGTTCAGAGCGCCTACGGC TTGACGGCTTTCGACTCCGTCATCCACATGGCCGAGGAGATTCCCGCGCCTCGACGCAACGTTCCGCGCACAATG TGGCTGGCCGTCGCTTCCGGCGCCGTCTCCGGCTTCGTCTTCATGGTCGTCTGCCTTTTCTGCATCCAGGACGTC GATCGGATATTGTCCCCGACTTCGGGCTTCCCCTTTATCGAAATCAGCCAGTCGACGCTTGGTCGCAACGCCGCC GCCGTCCTCATTGGCCTTTTCATCCTCAACGGCCTCGGACAGGGTTTCGGCATCCTGACGTCTGCCTCTCGTCTG ACGTGGAGCTTCGCCCGCGATGGTGGCCTACCCCTGAGTCAGTACTGGGCACACGTCGACCCACGTTGGCGCGTG CCCGCCCGCGCCCTCTGGCTACAGGCGTCCCTCATCGGTCTCGTCGGCCTGCTGTACCTGTTCGCCAGCACGGTT CTACAGGCGGTGCTCAGCGTCAGCACCATTGCGCTGACGCTGTCGTATGCCATGCCCATCGCCGCCCTGCTGCTG GCCGGACGAGGGGCTCTTCCGTCGGGTCAGTTCCGGCTGGGCCCTCGACTGGGACCCATCGCCAATGGTGTCTCG CTCGTTTACTGCGCCATCACCACCGTCTTCTTCTTCTTTCCCGGCTCGCCGAACCCGTCACCCGGTGATATGAAC TACGCAATCGCCGTCTTTGGCGTCATGGTCGTCGTAGCCCTCGCCTTTTGGCTCCTCGAGGGGCGTCACTCCTAC AAGCGACCCGCCGGCCATGTGCTATACGCTCAGGACCCGGTCGAGACGGTCGACGACGGTGATGGTAAAGGTTCG GCGAAGAAGTTATAGCAAGAAGTACGAGCGGTATTCTCTTCTTCTTTCCCCCCTACTCTTTTTCCTCCCTTGAGC AACGATTGAAACGATTTTGTACGTGGAAATGAGTTAGAGAGGCAAAGCAGACGGACAGGTGAGCAGGATTTTCAA CACCATTTCTTCATTGTTTTTTCTGTGGCCTTTCCCCTTTCATGGTAGTCCATGTCAAAGCCAGTCATGCAGAGA ATGGCAACACCTCAACCACAGAGCCATGTTACAGCCGCGACCCCAAATTAACATGAACAGCCTTCGTCTCAGTAT AA |