Fungal Genomics

at Utrecht University

General Properties

Protein IDOphio5|2553
Gene name
Locationscaffold_21:33664..34235
Strand+
Gene length (bp)571
Transcript length (bp)501
Coding sequence length (bp)498
Protein length (aa) 166

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PFAM Domains

PFAM Domain ID Short name Long name E-value Start End
PF01284 MARVEL Membrane-associating domain 7.5E-18 20 138

Swissprot hits

(None)

GO

GO Term Description Terminal node
GO:0016020 membrane Yes
GO:0110165 cellular anatomical entity No
GO:0005575 cellular_component No

SignalP

[Help with interpreting these statistics]
SignalP signal predicted Location
(based on Ymax)
D score
(significance: > 0.45)
No 1 - 31 0.5

Transmembrane Domains

Domain # Start End Length
1 12 34 22
2 49 68 19
3 80 102 22
4 117 139 22

Transcription Factor Class

(None)

Expression data

Analysis 1: Expression analysis during behavioral modification. Published in De Bekker et al., 2017.

Click here for more information

Sequences

Type of sequenceSequence
Locus Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein >Ophio5|2553
MARGFSGLAGFAPIMHAVLAVFLIIELGLTAYIVNRTDGAFASPPSQFSFMLFATIWSLLVLCYLALAPRYFARA
FHGLVALGLLGLTTVFWFAGSIALAVLLGIPNCLGSYCHTTRAAQAATAFGFFIWAIFAVLTALDGMANMRGGSA
RADTTSKSAQQPHVAV
Coding >Ophio5|2553
ATGGCTCGCGGCTTTTCCGGCCTCGCCGGCTTCGCCCCGATTATGCACGCCGTACTGGCCGTCTTTCTCATTATT
GAGCTGGGTTTAACGGCCTACATCGTCAACAGAACCGATGGTGCTTTTGCCAGTCCCCCCTCGCAATTCAGCTTC
ATGCTCTTCGCTACCATCTGGTCGCTTCTCGTACTCTGCTATCTTGCGCTTGCGCCTCGATACTTCGCCCGAGCT
TTCCATGGGCTCGTCGCGTTGGGTTTGCTGGGACTGACGACTGTGTTTTGGTTTGCTGGCTCGATTGCGTTGGCG
GTTCTGCTGGGGATTCCGAACTGCTTGGGCTCGTACTGTCACACGACGCGTGCTGCTCAGGCCGCTACCGCCTTT
GGATTCTTTATTTGGGCTATCTTCGCTGTCTTGACGGCGCTCGATGGCATGGCGAATATGAGGGGTGGTAGCGCG
AGGGCGGATACGACGAGTAAGTCTGCGCAGCAGCCGCATGTTGCTGTT
Transcript >Ophio5|2553
ATGGCTCGCGGCTTTTCCGGCCTCGCCGGCTTCGCCCCGATTATGCACGCCGTACTGGCCGTCTTTCTCATTATT
GAGCTGGGTTTAACGGCCTACATCGTCAACAGAACCGATGGTGCTTTTGCCAGTCCCCCCTCGCAATTCAGCTTC
ATGCTCTTCGCTACCATCTGGTCGCTTCTCGTACTCTGCTATCTTGCGCTTGCGCCTCGATACTTCGCCCGAGCT
TTCCATGGGCTCGTCGCGTTGGGTTTGCTGGGACTGACGACTGTGTTTTGGTTTGCTGGCTCGATTGCGTTGGCG
GTTCTGCTGGGGATTCCGAACTGCTTGGGCTCGTACTGTCACACGACGCGTGCTGCTCAGGCCGCTACCGCCTTT
GGATTCTTTATTTGGGCTATCTTCGCTGTCTTGACGGCGCTCGATGGCATGGCGAATATGAGGGGTGGTAGCGCG
AGGGCGGATACGACGAGTAAGTCTGCGCAGCAGCCGCATGTTGCTGTTTGA
Gene >Ophio5|2553
ATGGCTCGCGGCTTTTCCGGCCTCGCCGGCTTCGCCCCGATTATGCACGCCGTACTGGCCGTCTTTCTCATTATT
GAGCTGGGTTTAACGGCCTACAGTATGTCATCTTCCTCTCTGCTCTGCGCCGTTGCCAGGGAAAAAGCGGCGTCT
AACGCGAACCTTTGCAGTCGTCAACAGAACCGATGGTGCTTTTGCCAGTCCCCCCTCGCAATTCAGCTTCATGCT
CTTCGCTACCATCTGGTCGCTTCTCGTACTCTGCTATCTTGCGCTTGCGCCTCGATACTTCGCCCGAGCTTTCCA
TGGGCTCGTCGCGTTGGGTTTGCTGGGACTGACGACTGTGTTTTGGTTTGCTGGCTCGATTGCGTTGGCGGTTCT
GCTGGGGATTCCGAACTGCTTGGGCTCGTACTGTCACACGACGCGTGCTGCTCAGGCCGCTACCGCCTTTGGATT
CTTTATTTGGGCTATCTTCGCTGTCTTGACGGCGCTCGATGGCATGGCGAATATGAGGGGTGGTAGCGCGAGGGC
GGATACGACGAGTAAGTCTGCGCAGCAGCCGCATGTTGCTGTTTGA

© 2022 - Robin Ohm - Utrecht University - The Netherlands

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