Protein ID | Ophio5|2528 |
Gene name | |
Location | scaffold_209:3213..4989 |
Strand | + |
Gene length (bp) | 1776 |
Transcript length (bp) | 1494 |
Coding sequence length (bp) | 1491 |
Protein length (aa) | 497 |
PFAM Domain ID | Short name | Long name | E-value | Start | End |
---|---|---|---|---|---|
PF04042 | DNA_pol_E_B | DNA polymerase alpha/epsilon subunit B | 7.6E-48 | 215 | 450 |
PF18018 | DNA_pol_D_N | DNA polymerase delta subunit OB-fold domain | 1.7E-39 | 48 | 185 |
Swissprot ID | Swissprot Description | Start | End | E-value |
---|---|---|---|---|
sp|P46957|DPOD2_YEAST | DNA polymerase delta small subunit OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=POL31 PE=1 SV=1 | 28 | 493 | 3.0E-82 |
sp|Q9LRE5|DPOD2_ORYSJ | DNA polymerase delta small subunit OS=Oryza sativa subsp. japonica GN=POLD2 PE=2 SV=1 | 26 | 496 | 2.0E-81 |
sp|P87324|DPOD2_SCHPO | DNA polymerase subunit delta-2 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=cdc1 PE=1 SV=1 | 42 | 491 | 7.0E-81 |
sp|O48520|DPOD2_ARATH | DNA polymerase delta small subunit OS=Arabidopsis thaliana GN=POLD2 PE=2 SV=2 | 26 | 497 | 6.0E-78 |
sp|P49005|DPOD2_HUMAN | DNA polymerase delta subunit 2 OS=Homo sapiens GN=POLD2 PE=1 SV=1 | 6 | 484 | 5.0E-76 |
Swissprot ID | Swissprot Description | Start | End | E-value |
---|---|---|---|---|
sp|P46957|DPOD2_YEAST | DNA polymerase delta small subunit OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=POL31 PE=1 SV=1 | 28 | 493 | 3.0E-82 |
sp|Q9LRE5|DPOD2_ORYSJ | DNA polymerase delta small subunit OS=Oryza sativa subsp. japonica GN=POLD2 PE=2 SV=1 | 26 | 496 | 2.0E-81 |
sp|P87324|DPOD2_SCHPO | DNA polymerase subunit delta-2 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=cdc1 PE=1 SV=1 | 42 | 491 | 7.0E-81 |
sp|O48520|DPOD2_ARATH | DNA polymerase delta small subunit OS=Arabidopsis thaliana GN=POLD2 PE=2 SV=2 | 26 | 497 | 6.0E-78 |
sp|P49005|DPOD2_HUMAN | DNA polymerase delta subunit 2 OS=Homo sapiens GN=POLD2 PE=1 SV=1 | 6 | 484 | 5.0E-76 |
sp|Q6AXY4|DPOD2_RAT | DNA polymerase delta subunit 2 OS=Rattus norvegicus GN=Pold2 PE=1 SV=1 | 6 | 484 | 7.0E-76 |
sp|O35654|DPOD2_MOUSE | DNA polymerase delta subunit 2 OS=Mus musculus GN=Pold2 PE=1 SV=2 | 6 | 484 | 1.0E-74 |
sp|O93610|DPOD2_XENLA | DNA polymerase delta subunit 2 OS=Xenopus laevis GN=pold2 PE=2 SV=1 | 27 | 486 | 2.0E-74 |
sp|P49004|DPOD2_BOVIN | DNA polymerase delta subunit 2 OS=Bos taurus GN=POLD2 PE=1 SV=2 | 10 | 484 | 2.0E-74 |
sp|Q9W088|DPOD2_DROME | DNA polymerase delta small subunit OS=Drosophila melanogaster GN=CG12018 PE=2 SV=1 | 26 | 494 | 4.0E-68 |
sp|Q19366|DPOD2_CAEEL | Probable DNA polymerase delta small subunit OS=Caenorhabditis elegans GN=F12F6.7 PE=3 SV=1 | 40 | 486 | 6.0E-31 |
GO Term | Description | Terminal node |
---|---|---|
GO:0006260 | DNA replication | Yes |
GO:0003677 | DNA binding | Yes |
GO:0044237 | cellular metabolic process | No |
GO:0043170 | macromolecule metabolic process | No |
GO:0008150 | biological_process | No |
GO:0006725 | cellular aromatic compound metabolic process | No |
GO:0006259 | DNA metabolic process | No |
GO:0044238 | primary metabolic process | No |
GO:0090304 | nucleic acid metabolic process | No |
GO:0003676 | nucleic acid binding | No |
GO:0046483 | heterocycle metabolic process | No |
GO:0006139 | nucleobase-containing compound metabolic process | No |
GO:0008152 | metabolic process | No |
GO:0034641 | cellular nitrogen compound metabolic process | No |
GO:0003674 | molecular_function | No |
GO:0044260 | cellular macromolecule metabolic process | No |
GO:0071704 | organic substance metabolic process | No |
GO:0005488 | binding | No |
GO:0009987 | cellular process | No |
GO:1901363 | heterocyclic compound binding | No |
GO:1901360 | organic cyclic compound metabolic process | No |
GO:0097159 | organic cyclic compound binding | No |
GO:0006807 | nitrogen compound metabolic process | No |
SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
---|---|---|
No | 1 - 19 | 0.45 |
Type of sequence | Sequence |
---|---|
Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
Protein | >Ophio5|2528 MVALQEASGNLLQPPSHGYPPAAAPRADSSYAPLSSFALDKQRPYQQQYGDMYFLRLTKLRPAVDAVATAAWQGT VIGGEKARRVERVLDVRQGELCWVSGTVYMDMPLKPNILDDVSKDRWISAPVSTQRYYSDDDVDQIMLEDDSGRV RLVGDMPRAVPLVTGCIIAVMGTENSSGEFEVIDIKFPDLAPQPDRWALTKRPDASPCSGGNSLIALVSGLSFSA ADASHALELSLLREFLLGESLAPPVQGEASRISRLIIAGDSVSATAERKVDDDDNDNNSNKKTSKKYGYDASAYN ALPSQLLDDFLAELLPSLPVTLMPGARDPANASYPQQPMHMAMFPRARRFGPDPSAAVDQPAWFDTVTNPFEAEI AGWRVLGTAGQNVDDVFKYTESSDRLGMMEAMCRWRCCAPTAPDTLWSYPFQEDDPFVMKTCPHVYFVGCQPDFS SKLVEGPEGQTVRLVTLPSFADTRELALLDTETLKVSRLKIEVDLDR |
Coding | >Ophio5|2528 ATGGTTGCCCTACAAGAGGCATCCGGCAACCTTTTACAACCCCCCTCTCATGGCTACCCTCCAGCGGCTGCCCCC CGAGCCGACTCTTCGTACGCGCCGCTGAGCTCCTTCGCCCTCGACAAGCAGCGGCCGTATCAGCAGCAGTATGGC GACATGTACTTTCTGCGCCTCACTAAGCTCCGACCCGCCGTCGACGCCGTCGCGACCGCCGCCTGGCAGGGGACT GTCATTGGCGGCGAGAAGGCGAGGAGGGTGGAACGGGTGCTCGATGTGCGGCAGGGCGAGCTCTGCTGGGTCTCC GGCACGGTGTATATGGACATGCCGCTGAAGCCGAATATCCTGGATGACGTGTCCAAGGATCGTTGGATCTCGGCC CCCGTCTCGACGCAGAGGTACTATTCAGACGATGACGTCGACCAAATCATGCTCGAGGACGACTCCGGTCGCGTC CGGCTGGTGGGCGACATGCCACGGGCCGTGCCTCTGGTCACGGGCTGCATCATCGCCGTCATGGGCACCGAGAAC AGCAGCGGCGAGTTCGAGGTCATCGACATCAAGTTCCCGGACCTGGCGCCGCAGCCCGACCGCTGGGCTCTAACC AAGAGGCCGGACGCGTCGCCTTGTTCCGGTGGCAACAGCTTGATTGCCCTCGTCTCGGGCCTCTCGTTTTCCGCC GCCGACGCGTCGCACGCCCTGGAGCTAAGCCTACTGCGCGAATTCCTCCTCGGCGAATCGTTAGCTCCTCCGGTA CAGGGCGAGGCTTCGCGCATAAGCCGACTCATCATCGCCGGCGACTCCGTCTCTGCCACCGCCGAGCGCAAAGTC GACGACGACGACAACGACAACAACAGCAACAAAAAAACCAGCAAAAAATACGGCTACGACGCCAGCGCCTACAAC GCCCTTCCGTCGCAGCTCCTCGACGATTTTCTTGCTGAGCTTCTCCCCTCGTTGCCCGTGACGCTGATGCCGGGC GCGAGAGACCCGGCCAACGCGAGCTATCCGCAGCAGCCGATGCACATGGCCATGTTCCCGCGCGCCAGGCGGTTC GGACCCGATCCGTCGGCGGCCGTCGACCAGCCTGCGTGGTTTGACACCGTCACGAACCCGTTCGAGGCCGAGATT GCCGGCTGGCGGGTGCTCGGCACGGCGGGCCAGAACGTCGACGACGTCTTTAAATATACCGAGAGCAGTGATCGG TTGGGTATGATGGAGGCCATGTGTCGATGGAGGTGTTGCGCGCCGACTGCGCCGGACACGCTTTGGAGCTACCCC TTCCAGGAGGACGACCCGTTTGTGATGAAGACGTGCCCGCACGTTTATTTCGTCGGCTGCCAGCCCGACTTTTCC TCCAAGCTGGTGGAAGGGCCGGAGGGACAGACGGTGCGGCTCGTCACCCTGCCGTCCTTTGCCGACACGAGGGAG CTGGCTCTGCTGGATACGGAGACGTTGAAGGTGAGCAGGCTTAAGATTGAGGTTGACCTTGATCGG |
Transcript | >Ophio5|2528 ATGGTTGCCCTACAAGAGGCATCCGGCAACCTTTTACAACCCCCCTCTCATGGCTACCCTCCAGCGGCTGCCCCC CGAGCCGACTCTTCGTACGCGCCGCTGAGCTCCTTCGCCCTCGACAAGCAGCGGCCGTATCAGCAGCAGTATGGC GACATGTACTTTCTGCGCCTCACTAAGCTCCGACCCGCCGTCGACGCCGTCGCGACCGCCGCCTGGCAGGGGACT GTCATTGGCGGCGAGAAGGCGAGGAGGGTGGAACGGGTGCTCGATGTGCGGCAGGGCGAGCTCTGCTGGGTCTCC GGCACGGTGTATATGGACATGCCGCTGAAGCCGAATATCCTGGATGACGTGTCCAAGGATCGTTGGATCTCGGCC CCCGTCTCGACGCAGAGGTACTATTCAGACGATGACGTCGACCAAATCATGCTCGAGGACGACTCCGGTCGCGTC CGGCTGGTGGGCGACATGCCACGGGCCGTGCCTCTGGTCACGGGCTGCATCATCGCCGTCATGGGCACCGAGAAC AGCAGCGGCGAGTTCGAGGTCATCGACATCAAGTTCCCGGACCTGGCGCCGCAGCCCGACCGCTGGGCTCTAACC AAGAGGCCGGACGCGTCGCCTTGTTCCGGTGGCAACAGCTTGATTGCCCTCGTCTCGGGCCTCTCGTTTTCCGCC GCCGACGCGTCGCACGCCCTGGAGCTAAGCCTACTGCGCGAATTCCTCCTCGGCGAATCGTTAGCTCCTCCGGTA CAGGGCGAGGCTTCGCGCATAAGCCGACTCATCATCGCCGGCGACTCCGTCTCTGCCACCGCCGAGCGCAAAGTC GACGACGACGACAACGACAACAACAGCAACAAAAAAACCAGCAAAAAATACGGCTACGACGCCAGCGCCTACAAC GCCCTTCCGTCGCAGCTCCTCGACGATTTTCTTGCTGAGCTTCTCCCCTCGTTGCCCGTGACGCTGATGCCGGGC GCGAGAGACCCGGCCAACGCGAGCTATCCGCAGCAGCCGATGCACATGGCCATGTTCCCGCGCGCCAGGCGGTTC GGACCCGATCCGTCGGCGGCCGTCGACCAGCCTGCGTGGTTTGACACCGTCACGAACCCGTTCGAGGCCGAGATT GCCGGCTGGCGGGTGCTCGGCACGGCGGGCCAGAACGTCGACGACGTCTTTAAATATACCGAGAGCAGTGATCGG TTGGGTATGATGGAGGCCATGTGTCGATGGAGGTGTTGCGCGCCGACTGCGCCGGACACGCTTTGGAGCTACCCC TTCCAGGAGGACGACCCGTTTGTGATGAAGACGTGCCCGCACGTTTATTTCGTCGGCTGCCAGCCCGACTTTTCC TCCAAGCTGGTGGAAGGGCCGGAGGGACAGACGGTGCGGCTCGTCACCCTGCCGTCCTTTGCCGACACGAGGGAG CTGGCTCTGCTGGATACGGAGACGTTGAAGGTGAGCAGGCTTAAGATTGAGGTTGACCTTGATCGGTGA |
Gene | >Ophio5|2528 ATGGTTGCCCTACAAGAGGCATCCGGCAACCTTTTACAACCCCCCTCGTGAGTGTTTTTTTTTCTTCTCCGCCGT TGCCCGCTCAGTGACTGACTTTACTTCCCCTCTCCCCCCCCTAGTCATGGCTACCCTCCAGCGGCTGCCCCCCGA GCCGACTCTTCGTACGCGCCGCTGAGCTCCTTCGCCCTCGACAAGCAGCGGCCGTATCAGCAGCAGTATGGCGAC ATGTACTTTCTGCGCCTCACTAAGCTCCGACCCGCCGTCGACGCCGTCGCGACCGCCGCCTGGCAGGGGACTGTC ATTGGCGGCGAGAAGGCGAGGAGGGTGGAACGGGTGCTCGATGTGCGGCAGGGCGAGCTCTGCTGGGTCTCCGGC ACGGTGTATATGGACATGCCGCTGAAGCCGAATATCCTGGATGACGTGTCCAAGGATGTGAGTGTGGCTTTCTCC TGTGAAATAAAAAAGGACGCTTTTGACTGACGTGGTTTGGTAGCGTTGGATCTCGGCCCCCGTCTCGACGCAGAG GTACTATTCAGACGATGACGTCGACCAAATCATGCTCGAGGACGACTCCGGTCGCGTCCGGCTGGTGGGCGACAT GCCACGGGCCGTGCCTCTGGTCACGGGCTGCATCATCGCCGTCATGGGCACCGAGAACAGCAGCGGCGAGTTCGA GGTCATCGACATCAAGTTCCCGGACCTGGCGCCGCAGCCCGACCGCTGGGCTCTAACCAAGAGGCCGGACGCGTC GCCTTGTTCCGGTGGCAACAGCTTGATTGCCCTCGTCTCGGGCCTCTCGTTTTCCGCCGCCGACGCGTCGCACGC CCTGGAGCTAAGCCTACTGCGCGAATTCCTCCTCGGCGAATCGTTAGCTCCTCCGGTACAGGGCGAGGCTTCGCG CATAAGCCGACTCATCATCGCCGGCGACTCCGTCTCTGCCACCGCCGAGCGCAAAGTCGACGACGACGACAACGA CAACAACAGCAACAAAAAAACCAGCAAAAAATACGGCTACGACGCCAGCGCCTACAACGCCCTTCCGTCGCAGCT CCTCGACGATTTTCTTGCTGAGCTTCTCCCCTCGTTGCCCGTGACGCTGATGCCGGGCGCGAGAGACCCGGCCAA CGCGAGCTATCCGCAGCAGCCGATGCACATGGCCATGTTCCCGCGCGCCAGGCGGTTCGGACCCGATCCGTCGGC GGCCGTCGACCAGCCTGCGTGGTTTGACACCGTCACGAACCCGTTCGAGGCCGAGATTGCCGGCTGGCGGGTGCT CGGCACGGCGGGCCAGAACGTCGACGACGTCTTTAAATATACCGAGAGCAGTGATCGGTTGGGTATGATGGAGGC CATGTGTCGATGGAGGTGTTGCGCGCCGACTGCGCCGGACACGCTTTGTGAGTTTTTTTTTTTTTTAGTTTTTTT TTAGTTTGTTTTTTTCTCCCCTTTTCGCGGACTGTTGAGCCGCGCTCGTTTTATATATATATATGTGTGTGTGTT TGTTTATACGGACATACTGACTCTCCCCCCCCCCCTTTCTTCTCAGGGAGCTACCCCTTCCAGGAGGACGACCCG TTTGTGATGAAGACGTGCCCGCACGTTTATTTCGTCGGCTGCCAGCCCGACTTTTCCTCCAAGCTGGTGGAAGGG CCGGAGGGACAGACGGTGCGGCTCGTCACCCTGCCGTCCTTTGCCGACACGAGGGAGCTGGCTCTGCTGGATACG GAGACGTTGAAGGTGAGCAGGCTTAAGATTGAGGTTGACCTTGATCGGTGA |