© 2023 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Ophio5|2526 |
| Gene name | |
| Location | scaffold_209:61..1596 |
| Strand | + |
| Gene length (bp) | 1535 |
| Transcript length (bp) | 1278 |
| Coding sequence length (bp) | 1275 |
| Protein length (aa) | 425 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF01593 | Amino_oxidase | Flavin containing amine oxidoreductase | 1.6E-20 | 18 | 305 |
| PF13450 | NAD_binding_8 | NAD(P)-binding Rossmann-like domain | 2.3E-13 | 12 | 71 |
| PF01266 | DAO | FAD dependent oxidoreductase | 1.7E-10 | 11 | 295 |
| PF07992 | Pyr_redox_2 | Pyridine nucleotide-disulphide oxidoreductase | 1.0E-06 | 9 | 48 |
| PF00890 | FAD_binding_2 | FAD binding domain | 5.5E-05 | 10 | 44 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|P48537|CRTI_CERNC | Phytoene desaturase OS=Cercospora nicotianae GN=PDH1 PE=3 SV=1 | 1 | 395 | 8.0E-154 |
| sp|P21334|CRTI_NEUCR | Phytoene desaturase OS=Neurospora crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987) GN=al-1 PE=1 SV=1 | 25 | 400 | 9.0E-133 |
| sp|P54982|CRTI_PHYB8 | Phytoene desaturase OS=Phycomyces blakesleeanus (strain ATCC 8743b / FGSC 10004 / NBRC 33097 / NRRL 1555) GN=carB PE=3 SV=1 | 25 | 400 | 2.0E-122 |
| sp|P54979|CRTJ_MYXXA | zeta-carotene-forming phytoene desaturase OS=Myxococcus xanthus GN=carA2 PE=1 SV=1 | 30 | 396 | 5.0E-68 |
| sp|Q02861|CRTI_MYXXA | All-trans-zeta-carotene desaturase OS=Myxococcus xanthus GN=carC PE=1 SV=1 | 8 | 388 | 4.0E-47 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|P48537|CRTI_CERNC | Phytoene desaturase OS=Cercospora nicotianae GN=PDH1 PE=3 SV=1 | 1 | 395 | 8.0E-154 |
| sp|P21334|CRTI_NEUCR | Phytoene desaturase OS=Neurospora crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987) GN=al-1 PE=1 SV=1 | 25 | 400 | 9.0E-133 |
| sp|P54982|CRTI_PHYB8 | Phytoene desaturase OS=Phycomyces blakesleeanus (strain ATCC 8743b / FGSC 10004 / NBRC 33097 / NRRL 1555) GN=carB PE=3 SV=1 | 25 | 400 | 2.0E-122 |
| sp|P54979|CRTJ_MYXXA | zeta-carotene-forming phytoene desaturase OS=Myxococcus xanthus GN=carA2 PE=1 SV=1 | 30 | 396 | 5.0E-68 |
| sp|Q02861|CRTI_MYXXA | All-trans-zeta-carotene desaturase OS=Myxococcus xanthus GN=carC PE=1 SV=1 | 8 | 388 | 4.0E-47 |
| sp|P22871|CRTI_ESCVU | Phytoene desaturase (lycopene-forming) OS=Escherichia vulneris GN=crtI PE=3 SV=1 | 8 | 391 | 3.0E-42 |
| sp|Q6GDN7|CRTN_STAAR | Dehydrosqualene desaturase OS=Staphylococcus aureus (strain MRSA252) GN=crtN PE=3 SV=1 | 12 | 391 | 2.0E-40 |
| sp|Q8NUQ6|CRTN_STAAW | Dehydrosqualene desaturase OS=Staphylococcus aureus (strain MW2) GN=crtN PE=3 SV=1 | 12 | 391 | 2.0E-40 |
| sp|Q6G6B3|CRTN_STAAS | Dehydrosqualene desaturase OS=Staphylococcus aureus (strain MSSA476) GN=crtN PE=3 SV=1 | 12 | 391 | 2.0E-40 |
| sp|Q99R76|CRTN_STAAM | Dehydrosqualene desaturase OS=Staphylococcus aureus (strain Mu50 / ATCC 700699) GN=crtN PE=3 SV=1 | 12 | 391 | 3.0E-40 |
| sp|Q2FDU6|CRTN_STAA3 | Dehydrosqualene desaturase OS=Staphylococcus aureus (strain USA300) GN=crtN PE=3 SV=1 | 12 | 391 | 3.0E-40 |
| sp|Q2FV60|CRTN_STAA8 | Dehydrosqualene desaturase OS=Staphylococcus aureus (strain NCTC 8325) GN=crtN PE=3 SV=1 | 12 | 391 | 3.0E-40 |
| sp|O07855|CRTN_STAAE | Dehydrosqualene desaturase OS=Staphylococcus aureus (strain Newman) GN=crtN PE=1 SV=2 | 12 | 391 | 3.0E-40 |
| sp|Q7A3E2|CRTN_STAAN | Dehydrosqualene desaturase OS=Staphylococcus aureus (strain N315) GN=crtN PE=1 SV=1 | 12 | 391 | 3.0E-40 |
| sp|P54978|CRTI_PARSN | Phytoene desaturase (lycopene-forming) OS=Paracoccus sp. (strain N81106 / MBIC 01143) GN=crtI PE=3 SV=2 | 7 | 397 | 8.0E-40 |
| sp|Q2YWE8|CRTN_STAAB | Dehydrosqualene desaturase OS=Staphylococcus aureus (strain bovine RF122 / ET3-1) GN=crtN PE=3 SV=1 | 12 | 391 | 1.0E-39 |
| sp|Q5HCY9|CRTN_STAAC | Dehydrosqualene desaturase OS=Staphylococcus aureus (strain COL) GN=crtN PE=3 SV=1 | 12 | 391 | 3.0E-39 |
| sp|P54980|CRTI_RHOS4 | Phytoene desaturase (neurosporene-forming) OS=Rhodobacter sphaeroides (strain ATCC 17023 / 2.4.1 / NCIB 8253 / DSM 158) GN=crtI PE=3 SV=2 | 1 | 391 | 8.0E-39 |
| sp|Q4L975|CRTN_STAHJ | Dehydrosqualene desaturase OS=Staphylococcus haemolyticus (strain JCSC1435) GN=crtN PE=3 SV=2 | 12 | 400 | 9.0E-39 |
| sp|Q9JPB5|CRTD_RUBGE | Hydroxyneurosporene desaturase OS=Rubrivivax gelatinosus GN=crtD PE=1 SV=1 | 1 | 411 | 2.0E-35 |
| sp|P21685|CRTI_PANAN | Phytoene desaturase (lycopene-forming) OS=Pantoea ananas GN=crtI PE=1 SV=1 | 8 | 391 | 3.0E-35 |
| sp|Q4L978|CRTP_STAHJ | Diapolycopene oxygenase OS=Staphylococcus haemolyticus (strain JCSC1435) GN=crtP PE=3 SV=1 | 21 | 417 | 1.0E-33 |
| sp|P54981|CRTI_STRGR | Phytoene dehydrogenase OS=Streptomyces griseus GN=crtI PE=3 SV=1 | 33 | 378 | 2.0E-33 |
| sp|P17054|CRTI_RHOCB | Phytoene desaturase (neurosporene-forming) OS=Rhodobacter capsulatus (strain ATCC BAA-309 / NBRC 16581 / SB1003) GN=crtI PE=1 SV=1 | 1 | 398 | 2.0E-30 |
| sp|Q6G6B0|CRTP_STAAS | Diapolycopene oxygenase OS=Staphylococcus aureus (strain MSSA476) GN=crtP PE=3 SV=1 | 21 | 417 | 6.0E-29 |
| sp|Q8NUQ3|CRTP_STAAW | Diapolycopene oxygenase OS=Staphylococcus aureus (strain MW2) GN=crtP PE=3 SV=1 | 21 | 417 | 6.0E-29 |
| sp|Q2FDU3|CRTP_STAA3 | Diapolycopene oxygenase OS=Staphylococcus aureus (strain USA300) GN=crtP PE=3 SV=1 | 21 | 417 | 6.0E-29 |
| sp|Q2FV57|CRTP_STAA8 | Diapolycopene oxygenase OS=Staphylococcus aureus (strain NCTC 8325) GN=crtP PE=1 SV=1 | 21 | 417 | 6.0E-29 |
| sp|Q5HCY6|CRTP_STAAC | Diapolycopene oxygenase OS=Staphylococcus aureus (strain COL) GN=crtP PE=3 SV=1 | 21 | 417 | 6.0E-29 |
| sp|Q53589|CRTP_STAAE | Diapolycopene oxygenase OS=Staphylococcus aureus (strain Newman) GN=crtP PE=3 SV=2 | 21 | 417 | 6.0E-29 |
| sp|Q2YWE5|CRTP_STAAB | Diapolycopene oxygenase OS=Staphylococcus aureus (strain bovine RF122 / ET3-1) GN=crtP PE=3 SV=1 | 21 | 417 | 1.0E-28 |
| sp|Q7A3D9|CRTP_STAAN | Diapolycopene oxygenase OS=Staphylococcus aureus (strain N315) GN=crtP PE=1 SV=1 | 21 | 417 | 1.0E-28 |
| sp|Q99R73|CRTP_STAAM | Diapolycopene oxygenase OS=Staphylococcus aureus (strain Mu50 / ATCC 700699) GN=crtP PE=1 SV=1 | 21 | 417 | 1.0E-28 |
| sp|Q6GDN5|CRTP_STAAR | Diapolycopene oxygenase OS=Staphylococcus aureus (strain MRSA252) GN=crtP PE=3 SV=1 | 21 | 417 | 2.0E-27 |
| sp|Q01671|CRTD_RHOS4 | Hydroxyneurosporene desaturase OS=Rhodobacter sphaeroides (strain ATCC 17023 / 2.4.1 / NCIB 8253 / DSM 158) GN=crtD PE=1 SV=3 | 20 | 369 | 7.0E-19 |
| sp|P17059|CRTD_RHOCB | Hydroxyneurosporene desaturase OS=Rhodobacter capsulatus (strain ATCC BAA-309 / NBRC 16581 / SB1003) GN=crtD PE=3 SV=2 | 33 | 369 | 1.0E-11 |
| sp|Q5BLE8|RETST_DANRE | Putative all-trans-retinol 13,14-reductase OS=Danio rerio GN=retsat PE=2 SV=1 | 10 | 412 | 2.0E-08 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0016491 | oxidoreductase activity | Yes |
| GO:0003824 | catalytic activity | No |
| GO:0003674 | molecular_function | No |
| Localizations | Signals | Cytoplasm | Nucleus | Extracellular | Cell membrane | Mitochondrion | Plastid | Endoplasmic reticulum | Lysosome vacuole | Golgi apparatus | Peroxisome |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Cytoplasm | 0.5441 | 0.3162 | 0.462 | 0.0552 | 0.3367 | 0.149 | 0.3061 | 0.2324 | 0.1978 | 0.0075 |
| Orthofinder run ID | 4 |
| Orthogroup | 2976 |
| Change Orthofinder run |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
Download genbank file of locus (reverse complement)
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Ophio5|2526 MEKTTQAKSAIVIGAGVGGVAVAARLAKAGLEVTVVEKNDFTGGRCSLIHHEGYRFDQGPSLLLMPQFFTDIFHD LDTSLQDEGVELLKCEANYRLWFGDDGDHFDLSTSLGRLKGEMERWEGKAGFDRFLAFLQEAHRHYELRVKQVLL RRRNLGSLLAIRRPELVRRLLELDPFESLYRRVSRYFYSERLRRVFTFGSMYMGIMSPFDAPATFSLLQYAEGIC YPRGGFHRVVDALVRVGRRFGVRYRLASPVARVRVEGTGSGARATGVLLRSGEAISADVVVINADLVYAVKNLLP PSPRGPRLAPRPASCSSSISFYWAMSRLVPELGAHNVFPADEYRQSFEDIFIRHRMSDEPFFYVNVPSRIDPSAA PAGTDAIVAHVPVGHLLPDDDDDDDDDDDDDDDEEEEEGVDDDKDSEFTA |
| Coding | >Ophio5|2526 ATGGAAAAGACGACGCAAGCAAAGTCAGCCATCGTCATCGGGGCGGGAGTCGGCGGTGTGGCCGTAGCAGCTCGG CTGGCCAAAGCCGGTCTGGAGGTGACGGTGGTTGAGAAGAATGACTTTACCGGCGGACGATGCTCGCTCATTCAT CACGAGGGATATCGATTCGATCAAGGCCCATCGCTGCTGTTAATGCCACAGTTCTTCACTGATATATTTCATGAT CTCGACACCTCTCTTCAAGATGAAGGCGTCGAGCTTCTCAAGTGCGAAGCCAACTATAGACTCTGGTTCGGCGAT GATGGCGACCACTTCGACCTCTCGACCTCCCTCGGCCGCCTCAAAGGCGAAATGGAGCGATGGGAGGGCAAAGCC GGCTTCGACCGCTTCCTAGCCTTCCTCCAGGAGGCGCACCGACATTACGAGTTGAGGGTCAAGCAGGTGCTGCTG CGTCGTCGCAACTTGGGCTCGCTGCTGGCCATCCGTCGTCCGGAGCTGGTGAGACGATTGTTGGAACTTGATCCG TTCGAGTCCTTGTATAGGCGCGTCAGTCGATATTTTTACTCCGAGAGGCTTCGTCGCGTCTTTACCTTTGGGAGC ATGTATATGGGCATCATGTCGCCTTTTGATGCGCCCGCTACCTTTTCGCTTCTGCAGTATGCCGAGGGCATTTGC TATCCGCGTGGAGGCTTTCATCGCGTCGTCGACGCTTTGGTCCGGGTCGGTCGTCGGTTTGGCGTTCGCTATCGG CTGGCGAGCCCCGTCGCTCGCGTCCGGGTCGAAGGTACCGGCTCCGGAGCCCGGGCCACCGGCGTCCTTCTCCGC TCCGGGGAAGCCATCTCGGCCGATGTGGTCGTCATCAACGCCGACCTGGTCTACGCCGTCAAAAATCTTCTGCCG CCGTCTCCGAGAGGACCTCGTCTCGCCCCTCGGCCGGCATCGTGCAGCAGCTCCATTTCCTTTTACTGGGCCATG TCGCGCCTCGTTCCCGAGCTCGGGGCTCACAACGTCTTTCCGGCTGACGAGTATCGCCAGTCGTTTGAAGACATC TTTATCCGTCACCGTATGTCGGACGAGCCGTTCTTTTACGTCAATGTGCCCTCGCGTATCGACCCTTCCGCCGCA CCGGCTGGAACGGATGCCATCGTCGCCCACGTCCCTGTCGGCCATCTGCTACCAGACGACGACGACGACGACGAC GACGATGACGACGACGACGACGACGAAGAAGAAGAAGAAGGAGTCGATGACGATAAAGACAGTGAATTTACCGCG |
| Transcript | >Ophio5|2526 ATGGAAAAGACGACGCAAGCAAAGTCAGCCATCGTCATCGGGGCGGGAGTCGGCGGTGTGGCCGTAGCAGCTCGG CTGGCCAAAGCCGGTCTGGAGGTGACGGTGGTTGAGAAGAATGACTTTACCGGCGGACGATGCTCGCTCATTCAT CACGAGGGATATCGATTCGATCAAGGCCCATCGCTGCTGTTAATGCCACAGTTCTTCACTGATATATTTCATGAT CTCGACACCTCTCTTCAAGATGAAGGCGTCGAGCTTCTCAAGTGCGAAGCCAACTATAGACTCTGGTTCGGCGAT GATGGCGACCACTTCGACCTCTCGACCTCCCTCGGCCGCCTCAAAGGCGAAATGGAGCGATGGGAGGGCAAAGCC GGCTTCGACCGCTTCCTAGCCTTCCTCCAGGAGGCGCACCGACATTACGAGTTGAGGGTCAAGCAGGTGCTGCTG CGTCGTCGCAACTTGGGCTCGCTGCTGGCCATCCGTCGTCCGGAGCTGGTGAGACGATTGTTGGAACTTGATCCG TTCGAGTCCTTGTATAGGCGCGTCAGTCGATATTTTTACTCCGAGAGGCTTCGTCGCGTCTTTACCTTTGGGAGC ATGTATATGGGCATCATGTCGCCTTTTGATGCGCCCGCTACCTTTTCGCTTCTGCAGTATGCCGAGGGCATTTGC TATCCGCGTGGAGGCTTTCATCGCGTCGTCGACGCTTTGGTCCGGGTCGGTCGTCGGTTTGGCGTTCGCTATCGG CTGGCGAGCCCCGTCGCTCGCGTCCGGGTCGAAGGTACCGGCTCCGGAGCCCGGGCCACCGGCGTCCTTCTCCGC TCCGGGGAAGCCATCTCGGCCGATGTGGTCGTCATCAACGCCGACCTGGTCTACGCCGTCAAAAATCTTCTGCCG CCGTCTCCGAGAGGACCTCGTCTCGCCCCTCGGCCGGCATCGTGCAGCAGCTCCATTTCCTTTTACTGGGCCATG TCGCGCCTCGTTCCCGAGCTCGGGGCTCACAACGTCTTTCCGGCTGACGAGTATCGCCAGTCGTTTGAAGACATC TTTATCCGTCACCGTATGTCGGACGAGCCGTTCTTTTACGTCAATGTGCCCTCGCGTATCGACCCTTCCGCCGCA CCGGCTGGAACGGATGCCATCGTCGCCCACGTCCCTGTCGGCCATCTGCTACCAGACGACGACGACGACGACGAC GACGATGACGACGACGACGACGACGAAGAAGAAGAAGAAGGAGTCGATGACGATAAAGACAGTGAATTTACCGCG TAA |
| Gene | >Ophio5|2526 ATGGAAAAGACGACGCAAGCAAAGTCAGCCATCGTCATCGGTGAGAAAAGCTCCTCTGCTGGCCGAAAAATGAAA ACCAGAAAAAAAAATAACATATAAAATATATAAAAAAAAAAAAAACCCCCTGGGACGAGCAGCAGCTAACATGAT TTGCAGGGGCGGGAGTCGGCGGTGTGGCCGTAGCAGCTCGGCTGGCCAAAGCCGGTCTGGAGGTGACGGTGGTTG AGAAGAATGACTTTACCGGCGGACGATGCTCGCTCATTCATCACGAGGGATATGTGCGTTGTTTTTTTTTTTCCA TTTCCCAATTTCTTTTTTCTTTGGTAGGAGAGGAAAAAGAGAGAAGAAGAGAAGAAGNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNGAAGAAAAAAGCTAACGGGAAGAAAAAGCGATTCGATCAAGGCCCATCGCTGCTGTTAA TGCCACAGTTCTTCACTGATATATTTCATGATCTCGACACCTCTCTTCAAGATGAAGGCGTCGAGCTTCTCAAGT GCGAAGCCAACTATAGACTCTGGTTCGGCGATGATGGCGACCACTTCGACCTCTCGACCTCCCTCGGCCGCCTCA AAGGCGAAATGGAGCGATGGGAGGGCAAAGCCGGCTTCGACCGCTTCCTAGCCTTCCTCCAGGAGGCGCACCGAC ATTACGAGTTGAGGGTCAAGCAGGTGCTGCTGCGTCGTCGCAACTTGGGCTCGCTGCTGGCCATCCGTCGTCCGG AGCTGGTGAGACGATTGTTGGAACTTGATCCGTTCGAGTCCTTGTATAGGCGCGTCAGTCGATATTTTTACTCCG AGAGGCTTCGTCGCGTCTTTACCTTTGGGAGCATGTATATGGGCATCATGTCGCCTTTTGATGCGCCCGCTACCT TTTCGCTTCTGCAGTATGCCGAGGGCATTTGCTATCCGCGTGGAGGCTTTCATCGCGTCGTCGACGCTTTGGTCC GGGTCGGTCGTCGGTTTGGCGTTCGCTATCGGCTGGCGAGCCCCGTCGCTCGCGTCCGGGTCGAAGGTACCGGCT CCGGAGCCCGGGCCACCGGCGTCCTTCTCCGCTCCGGGGAAGCCATCTCGGCCGATGTGGTCGTCATCAACGCCG ACCTGGTCTACGCCGTCAAAAATCTTCTGCCGCCGTCTCCGAGAGGACCTCGTCTCGCCCCTCGGCCGGCATCGT GCAGCAGCTCCATTTCCTTTTACTGGGCCATGTCGCGCCTCGTTCCCGAGCTCGGGGCTCACAACGTCTTTCCGG CTGACGAGTATCGCCAGTCGTTTGAAGACATCTTTATCCGTCACCGTATGTCGGACGAGCCGTTCTTTTACGTCA ATGTGCCCTCGCGTATCGACCCTTCCGCCGCACCGGCTGGAACGGATGCCATCGTCGCCCACGTCCCTGTCGGCC ATCTGCTACCAGACGACGACGACGACGACGACGACGATGACGACGACGACGACGACGAAGAAGAAGAAGAAGGAG TCGATGACGATAAAGACAGTGAATTTACCGCGTAA |