© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Ophio5|2520 |
| Gene name | |
| Location | scaffold_208:11834..12341 |
| Strand | - |
| Gene length (bp) | 507 |
| Transcript length (bp) | 336 |
| Coding sequence length (bp) | 333 |
| Protein length (aa) | 111 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF12678 | zf-rbx1 | RING-H2 zinc finger domain | 1.0E-24 | 43 | 101 |
| PF12861 | zf-ANAPC11 | Anaphase-promoting complex subunit 11 RING-H2 finger | 4.6E-17 | 24 | 107 |
| PF13639 | zf-RING_2 | Ring finger domain | 2.4E-06 | 56 | 99 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|Q54K33|RBX1_DICDI | RING-box protein 1 OS=Dictyostelium discoideum GN=rbx1 PE=3 SV=1 | 7 | 111 | 1.0E-60 |
| sp|P62878|RBX1_MOUSE | E3 ubiquitin-protein ligase RBX1 OS=Mus musculus GN=Rbx1 PE=1 SV=1 | 6 | 110 | 2.0E-60 |
| sp|P62877|RBX1_HUMAN | E3 ubiquitin-protein ligase RBX1 OS=Homo sapiens GN=RBX1 PE=1 SV=1 | 6 | 110 | 2.0E-60 |
| sp|Q8QG64|RBX1_SALSA | RING-box protein 1 OS=Salmo salar GN=rbx1 PE=2 SV=2 | 3 | 110 | 2.0E-59 |
| sp|Q9W5E1|RBX1A_DROME | RING-box protein 1A OS=Drosophila melanogaster GN=Roc1a PE=1 SV=1 | 3 | 110 | 2.0E-58 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|Q54K33|RBX1_DICDI | RING-box protein 1 OS=Dictyostelium discoideum GN=rbx1 PE=3 SV=1 | 7 | 111 | 1.0E-60 |
| sp|P62878|RBX1_MOUSE | E3 ubiquitin-protein ligase RBX1 OS=Mus musculus GN=Rbx1 PE=1 SV=1 | 6 | 110 | 2.0E-60 |
| sp|P62877|RBX1_HUMAN | E3 ubiquitin-protein ligase RBX1 OS=Homo sapiens GN=RBX1 PE=1 SV=1 | 6 | 110 | 2.0E-60 |
| sp|Q8QG64|RBX1_SALSA | RING-box protein 1 OS=Salmo salar GN=rbx1 PE=2 SV=2 | 3 | 110 | 2.0E-59 |
| sp|Q9W5E1|RBX1A_DROME | RING-box protein 1A OS=Drosophila melanogaster GN=Roc1a PE=1 SV=1 | 3 | 110 | 2.0E-58 |
| sp|Q940X7|RBX1A_ARATH | RING-box protein 1a OS=Arabidopsis thaliana GN=RBX1A PE=1 SV=1 | 5 | 111 | 1.0E-56 |
| sp|Q23457|RBX1_CAEEL | RING-box protein 1 OS=Caenorhabditis elegans GN=rbx-1 PE=1 SV=1 | 22 | 110 | 1.0E-53 |
| sp|Q9M2B0|RBX1B_ARATH | RING-box protein 1b OS=Arabidopsis thaliana GN=RBX1B PE=2 SV=1 | 23 | 111 | 3.0E-53 |
| sp|O13959|RBX1_SCHPO | RING-box protein pip1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=pip1 PE=1 SV=2 | 1 | 110 | 2.0E-52 |
| sp|Q9NHX0|RBX1B_DROME | RING-box protein 1B OS=Drosophila melanogaster GN=Roc1b PE=2 SV=2 | 14 | 111 | 2.0E-42 |
| sp|Q08273|RBX1_YEAST | RING-box protein HRT1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=HRT1 PE=1 SV=1 | 3 | 111 | 2.0E-41 |
| sp|Q9UBF6|RBX2_HUMAN | RING-box protein 2 OS=Homo sapiens GN=RNF7 PE=1 SV=1 | 23 | 111 | 3.0E-26 |
| sp|Q9WTZ1|RBX2_MOUSE | RING-box protein 2 OS=Mus musculus GN=Rnf7 PE=3 SV=1 | 23 | 111 | 4.0E-26 |
| sp|Q9M9L0|APC11_ARATH | Anaphase-promoting complex subunit 11 OS=Arabidopsis thaliana GN=APC11 PE=1 SV=2 | 24 | 108 | 3.0E-15 |
| sp|Q9CPX9|APC11_MOUSE | Anaphase-promoting complex subunit 11 OS=Mus musculus GN=Anapc11 PE=3 SV=1 | 24 | 108 | 1.0E-14 |
| sp|Q5R8A2|APC11_PONAB | Anaphase-promoting complex subunit 11 OS=Pongo abelii GN=ANAPC11 PE=3 SV=1 | 24 | 108 | 2.0E-14 |
| sp|Q9NYG5|APC11_HUMAN | Anaphase-promoting complex subunit 11 OS=Homo sapiens GN=ANAPC11 PE=1 SV=1 | 24 | 108 | 2.0E-14 |
| sp|Q54L48|APC11_DICDI | Anaphase-promoting complex subunit 11 OS=Dictyostelium discoideum GN=anapc11 PE=3 SV=1 | 30 | 107 | 2.0E-14 |
| sp|Q3ZCF6|APC11_BOVIN | Anaphase-promoting complex subunit 11 OS=Bos taurus GN=ANAPC11 PE=3 SV=1 | 24 | 108 | 4.0E-14 |
| sp|Q9UT86|APC11_SCHPO | Anaphase-promoting complex subunit 11 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=apc11 PE=1 SV=1 | 24 | 104 | 2.0E-10 |
| sp|Q5UQ40|UBC4_MIMIV | Probable bifunctional E2/E3 enzyme R795 OS=Acanthamoeba polyphaga mimivirus GN=MIMI_R795 PE=3 SV=1 | 44 | 106 | 4.0E-10 |
| sp|Q20052|APC11_CAEEL | Anaphase-promoting complex subunit 11 OS=Caenorhabditis elegans GN=apc-11 PE=1 SV=1 | 22 | 104 | 5.0E-09 |
| sp|Q12157|APC11_YEAST | Anaphase-promoting complex subunit 11 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=APC11 PE=1 SV=1 | 43 | 108 | 2.0E-06 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0031145 | anaphase-promoting complex-dependent catabolic process | Yes |
| GO:0005680 | anaphase-promoting complex | Yes |
| GO:0008270 | zinc ion binding | Yes |
| GO:0061630 | ubiquitin protein ligase activity | Yes |
| GO:0097602 | cullin family protein binding | Yes |
| GO:0046872 | metal ion binding | No |
| GO:0044260 | cellular macromolecule metabolic process | No |
| GO:1990234 | transferase complex | No |
| GO:0003674 | molecular_function | No |
| GO:0044237 | cellular metabolic process | No |
| GO:0043169 | cation binding | No |
| GO:0043167 | ion binding | No |
| GO:0008152 | metabolic process | No |
| GO:0019941 | modification-dependent protein catabolic process | No |
| GO:1902494 | catalytic complex | No |
| GO:0031461 | cullin-RING ubiquitin ligase complex | No |
| GO:0030163 | protein catabolic process | No |
| GO:0004842 | ubiquitin-protein transferase activity | No |
| GO:0044238 | primary metabolic process | No |
| GO:0006508 | proteolysis | No |
| GO:0005515 | protein binding | No |
| GO:0043161 | proteasome-mediated ubiquitin-dependent protein catabolic process | No |
| GO:0032991 | protein-containing complex | No |
| GO:0000151 | ubiquitin ligase complex | No |
| GO:1901564 | organonitrogen compound metabolic process | No |
| GO:0008150 | biological_process | No |
| GO:0043170 | macromolecule metabolic process | No |
| GO:0051603 | proteolysis involved in protein catabolic process | No |
| GO:0140513 | nuclear protein-containing complex | No |
| GO:0043632 | modification-dependent macromolecule catabolic process | No |
| GO:0003824 | catalytic activity | No |
| GO:0006807 | nitrogen compound metabolic process | No |
| GO:1901575 | organic substance catabolic process | No |
| GO:0009057 | macromolecule catabolic process | No |
| GO:0000152 | nuclear ubiquitin ligase complex | No |
| GO:0044248 | cellular catabolic process | No |
| GO:0019787 | ubiquitin-like protein transferase activity | No |
| GO:0006511 | ubiquitin-dependent protein catabolic process | No |
| GO:0046914 | transition metal ion binding | No |
| GO:1901565 | organonitrogen compound catabolic process | No |
| GO:0016740 | transferase activity | No |
| GO:0005575 | cellular_component | No |
| GO:0019538 | protein metabolic process | No |
| GO:0009056 | catabolic process | No |
| GO:0140535 | intracellular protein-containing complex | No |
| GO:0010498 | proteasomal protein catabolic process | No |
| GO:0009987 | cellular process | No |
| GO:0005488 | binding | No |
| GO:0140096 | catalytic activity, acting on a protein | No |
| GO:0071704 | organic substance metabolic process | No |
| GO:0061659 | ubiquitin-like protein ligase activity | No |
| GO:0044265 | cellular macromolecule catabolic process | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 49 | 0.45 |
Expression values
| Label | Description | Expression (RPKM) | Confidence interval (low) | Confidence interval (high) |
|---|---|---|---|---|
| SC16a | Pure fungal culture | 192.80 | 93.16 | 292.45 |
| CcL | In ants, during behavior modification | 150.67 | 68.38 | 232.97 |
| CcD | In ants, recently dead | 249.70 | 127.79 | 371.60 |
Differential expression
| Label1 | Label2 | Q-value | Significant difference |
|---|---|---|---|
| SC16a | CcL | 0.374972 | no |
| SC16a | CcD | 0.316341 | no |
| CcL | CcD | 0.050303 | no |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Ophio5|2520 MSDAPAATKRADNAAGKAPEGKKKFEVKKWNAVALWAWDIVVDNCAICRNHIMDLCIECQANQASATSEECTVAW GICNHAFHFHCISRWLKARSVCPLDNRDWEFQKYGR |
| Coding | >Ophio5|2520 ATGAGCGACGCCCCAGCTGCTACTAAGCGAGCAGACAATGCCGCTGGAAAGGCACCCGAGGGCAAGAAGAAGTTC GAGGTCAAAAAGTGGAACGCCGTTGCGCTTTGGGCGTGGGACATTGTCGTCGACAACTGCGCCATCTGCCGCAAC CACATCATGGATTTGTGCATAGAATGTCAAGCGAATCAAGCCTCAGCGACCAGCGAGGAGTGTACAGTGGCATGG GGCATCTGCAACCACGCGTTTCACTTCCACTGCATTTCGCGATGGCTGAAAGCCAGATCGGTATGTCCCTTGGAC AATAGGGACTGGGAGTTCCAGAAGTATGGGCGC |
| Transcript | >Ophio5|2520 ATGAGCGACGCCCCAGCTGCTACTAAGCGAGCAGACAATGCCGCTGGAAAGGCACCCGAGGGCAAGAAGAAGTTC GAGGTCAAAAAGTGGAACGCCGTTGCGCTTTGGGCGTGGGACATTGTCGTCGACAACTGCGCCATCTGCCGCAAC CACATCATGGATTTGTGCATAGAATGTCAAGCGAATCAAGCCTCAGCGACCAGCGAGGAGTGTACAGTGGCATGG GGCATCTGCAACCACGCGTTTCACTTCCACTGCATTTCGCGATGGCTGAAAGCCAGATCGGTATGTCCCTTGGAC AATAGGGACTGGGAGTTCCAGAAGTATGGGCGCTGA |
| Gene | >Ophio5|2520 ATGAGCGACGCCCCAGCTGCTACTAAGCGAGCAGACAATGCCGCTGGAAAGGCACCCGAGGGCAAGAAGAAGTTC GAGGTCAAAAAGGTGAGACGTCGGACGGCGCCGGCACAAAACCCCTGCTGATCGCGCGCAGTGGAACGCCGTTGC GCTTTGGGCGTGGGACATTGTCGTCGACAACTGCGCCATCTGCCGCAACCACATCATGGATTTGTGTACGTCTCA ACAGGCTCTCCTCTTTTTTGGCGCGACACCGCATTCTGACCAGCTCGCGCGAGCAGGCATAGAATGTCAAGCGAA TCAAGCCTCAGCGACCAGCGAGGAGTGTACAGTGGCATGGGGCATCTGCAACGTACCGTTTCCCCTCCTACGGCT ACCCCCGAGGCACACATTCTGACAGGTTGATAGCACGCGTTTCACTTCCACTGCATTTCGCGATGGCTGAAAGCC AGATCGGTATGTCCCTTGGACAATAGGGACTGGGAGTTCCAGAAGTATGGGCGCTGA |