Fungal Genomics

at Utrecht University

General Properties

Protein IDOphio5|250
Gene name
Locationscaffold_105:20114..20962
Strand-
Gene length (bp)848
Transcript length (bp)681
Coding sequence length (bp)678
Protein length (aa) 226

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PFAM Domains

PFAM Domain ID Short name Long name E-value Start End
PF01753 zf-MYND MYND finger 5.2E-08 157 197

Swissprot hits

(None)

GO

(None)

SignalP

[Help with interpreting these statistics]
SignalP signal predicted Location
(based on Ymax)
D score
(significance: > 0.45)
No 1 - 12 0.45

Transmembrane Domains

(None)

Transcription Factor Class

(None)

Expression data

Analysis 1: Expression analysis during behavioral modification. Published in De Bekker et al., 2017.

Click here for more information

Sequences

Type of sequenceSequence
Locus Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein >Ophio5|250
MDTPQMPTEMPKLDDPRFFPVFEALPIKYKVNLAYHGTNDGRVYRPRAHWCFLGEIVQHSFFLRLSILVRDGNGK
SIPITFYTSEHGSSLVRNGEVKIGYTAAVLYAEQHGFVDSTVGICQQALQTIKVFPVSMDGLMQLSDRLQKYATV
DKDETTCHNCQRKAASLLRCAKCNLFSYCNKDCQVEAWHHKGHKADCKLLKDADFRSLLLLQWDCFQDFHQFSPR
T
Coding >Ophio5|250
ATGGACACTCCCCAGATGCCAACGGAGATGCCCAAGCTGGACGACCCAAGGTTTTTTCCCGTCTTCGAAGCCCTG
CCGATCAAGTACAAGGTCAATCTCGCCTACCACGGCACCAACGATGGGCGAGTCTACCGGCCGCGAGCTCACTGG
TGCTTCCTCGGTGAGATTGTCCAGCACTCGTTCTTTCTGCGACTGAGCATCTTGGTCAGAGACGGCAACGGGAAG
TCGATCCCCATTACTTTCTATACGTCGGAACATGGAAGCAGCCTGGTACGAAATGGCGAGGTCAAGATTGGCTAT
ACGGCTGCTGTTCTCTATGCGGAGCAGCATGGCTTTGTGGACTCTACTGTTGGCATTTGCCAGCAGGCTTTGCAG
ACAATCAAGGTGTTCCCCGTGTCGATGGACGGTTTGATGCAGCTGAGTGACCGACTCCAGAAGTACGCAACGGTC
GACAAGGACGAGACGACGTGCCACAACTGCCAACGAAAGGCTGCTTCTTTACTGCGCTGTGCCAAATGCAACCTC
TTCTCCTACTGCAACAAGGATTGCCAGGTCGAGGCGTGGCATCACAAGGGACACAAGGCCGATTGCAAGCTCCTT
AAAGATGCAGACTTTCGAAGCTTGTTGCTCTTGCAGTGGGACTGCTTTCAAGACTTTCACCAGTTTTCGCCTCGG
ACT
Transcript >Ophio5|250
ATGGACACTCCCCAGATGCCAACGGAGATGCCCAAGCTGGACGACCCAAGGTTTTTTCCCGTCTTCGAAGCCCTG
CCGATCAAGTACAAGGTCAATCTCGCCTACCACGGCACCAACGATGGGCGAGTCTACCGGCCGCGAGCTCACTGG
TGCTTCCTCGGTGAGATTGTCCAGCACTCGTTCTTTCTGCGACTGAGCATCTTGGTCAGAGACGGCAACGGGAAG
TCGATCCCCATTACTTTCTATACGTCGGAACATGGAAGCAGCCTGGTACGAAATGGCGAGGTCAAGATTGGCTAT
ACGGCTGCTGTTCTCTATGCGGAGCAGCATGGCTTTGTGGACTCTACTGTTGGCATTTGCCAGCAGGCTTTGCAG
ACAATCAAGGTGTTCCCCGTGTCGATGGACGGTTTGATGCAGCTGAGTGACCGACTCCAGAAGTACGCAACGGTC
GACAAGGACGAGACGACGTGCCACAACTGCCAACGAAAGGCTGCTTCTTTACTGCGCTGTGCCAAATGCAACCTC
TTCTCCTACTGCAACAAGGATTGCCAGGTCGAGGCGTGGCATCACAAGGGACACAAGGCCGATTGCAAGCTCCTT
AAAGATGCAGACTTTCGAAGCTTGTTGCTCTTGCAGTGGGACTGCTTTCAAGACTTTCACCAGTTTTCGCCTCGG
ACTTGA
Gene >Ophio5|250
ATGGACACTCCCCAGATGCCAACGGAGATGCCCAAGCTGGACGACCCAAGGTTTTTTCCCGTCTTCGAAGCCCTG
CCGATCAAGTACAAGGTCAATCTCGCCTACCACGGCACCAACGATGGGCGAGTCTACCGGCCGCGAGCTCACTGG
TGCTTCCTCGGTGAGATTGTCCAGCACTCGTTCTTTCTGCGACTGAGCATCTTGGTCAGAGACGGCAACGGGAAG
TCGATCCCCATTACTTTCTATACGTCGGAACATGGAAGCAGCCTGGTACGAAATGGCGAGGTCAAGATTGGCTAT
ACGGCTGCTGTTCTCTATGCGGAGCAGCATGGCTTTGTGGACTCTACTGTTGGCATTTGCCAGCAGGCTTTGCAG
ACAATCAAGGTACTCGTTTTATTGGGGGGAAAACAAGCCCCCCCCGTCCCCCCTTCTTTCTATCTACCGCTGCTG
AACCATCTCTTTCTCAGGTGTTCCCCGTGTCGATGGACGGTTTGATGCAGCTGAGTGACCGACTCCAGAAGTACG
CAACGGTCGACAAGGACGAGACGACGTGCCACAACTGCCAACGAAAGGCTGCTTCTTTACTGCGCTGTGCCAAAT
GCAACCTCTTCTCCTACTGCAACAAGGCAAGTTTTTTTTTTCCTTTTTCAGTTTTTGCCCGCTCTTGATGCCGTT
TCTGGACAAGGTCGGTGACTGACTTGGCAACACAGGATTGCCAGGTCGAGGCGTGGCATCACAAGGGACACAAGG
CCGATTGCAAGCTCCTTAAAGATGCAGACTTTCGAAGCTTGTTGCTCTTGCAGTGGGACTGCTTTCAAGACTTTC
ACCAGTTTTCGCCTCGGACTTGA

© 2022 - Robin Ohm - Utrecht University - The Netherlands

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