Fungal Genomics

at Utrecht University

General Properties

Protein IDOphio5|2499
Gene name
Locationscaffold_206:25695..25982
Strand-
Gene length (bp)287
Transcript length (bp)228
Coding sequence length (bp)225
Protein length (aa) 75

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PFAM Domains

(None)

Swissprot hits

(None)

GO

(None)

SignalP

[Help with interpreting these statistics]
SignalP signal predicted Location
(based on Ymax)
D score
(significance: > 0.45)
Yes 1 - 27 0.45

Transmembrane Domains

(None)

Transcription Factor Class

(None)

Expression data

Analysis 1: Expression analysis during behavioral modification. Published in De Bekker et al., 2017.

Expression values

Label Description Expression (RPKM) Confidence interval (low) Confidence interval (high)
SC16a Pure fungal culture 0.63 0.00 2.25
CcL In ants, during behavior modification 6.95 0.77 13.13
CcD In ants, recently dead 2.02 0.00 5.30

Differential expression

Label1 Label2 Q-value Significant difference
SC16a CcL 0.239606 no
SC16a CcD 1.000000 no
CcL CcD 0.288966 no

Sequences

Type of sequenceSequence
Locus Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein >Ophio5|2499
MSPPTHHPLTPSSLLFLTLFFFGGRGGKTDEGAPRSVSCRRRRLASDRCLLHTTSIEQLDESSRGKADEQSPEFE
Coding >Ophio5|2499
ATGTCGCCCCCCACCCACCACCCTCTTACCCCTTCTTCTCTGCTCTTCCTCACCCTGTTTTTTTTTGGGGGGAGG
GGGGGGAAGACAGACGAGGGCGCGCCGCGGTCCGTCTCTTGTCGCCGTCGCCGTCTCGCGAGCGACAGATGCCTC
TTGCACACTACCTCGATTGAACAGCTGGACGAGTCGTCTCGGGGGAAAGCGGACGAGCAAAGTCCAGAGTTCGAA
Transcript >Ophio5|2499
ATGTCGCCCCCCACCCACCACCCTCTTACCCCTTCTTCTCTGCTCTTCCTCACCCTGTTTTTTTTTGGGGGGAGG
GGGGGGAAGACAGACGAGGGCGCGCCGCGGTCCGTCTCTTGTCGCCGTCGCCGTCTCGCGAGCGACAGATGCCTC
TTGCACACTACCTCGATTGAACAGCTGGACGAGTCGTCTCGGGGGAAAGCGGACGAGCAAAGTCCAGAGTTCGAA
TAA
Gene >Ophio5|2499
ATGTCGCCCCCCACCCACCACCCTCTTACCCCTTCTTCTCTGCTCTTCCTCACCCTGTTTTTTTTTGGGGGGAGG
GGGGGGAAGACAGACGAGGGCGCGCCGCGGTCCGTCTCTTGTCGCCGTCGCCGTCTCGGTCGGTCTATATAACCC
CATCAACTGCTGAGCATCATCACACTGACAAACCGGTCAAAGCGAGCGACAGATGCCTCTTGCACACTACCTCGA
TTGAACAGCTGGACGAGTCGTCTCGGGGGAAAGCGGACGAGCAAAGTCCAGAGTTCGAATAA

© 2022 - Robin Ohm - Utrecht University - The Netherlands

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