Protein ID | Ophio5|2499 |
Gene name | |
Location | scaffold_206:25695..25982 |
Strand | - |
Gene length (bp) | 287 |
Transcript length (bp) | 228 |
Coding sequence length (bp) | 225 |
Protein length (aa) | 75 |
Localizations | Signals | Cytoplasm | Nucleus | Extracellular | Cell membrane | Mitochondrion | Plastid | Endoplasmic reticulum | Lysosome vacuole | Golgi apparatus | Peroxisome |
---|---|---|---|---|---|---|---|---|---|---|---|
Nucleus | 0.427 | 0.5739 | 0.1959 | 0.1394 | 0.2245 | 0.253 | 0.1964 | 0.2269 | 0.0931 | 0.0248 |
Expression values
Label | Description | Expression (RPKM) | Confidence interval (low) | Confidence interval (high) |
---|---|---|---|---|
SC16a | Pure fungal culture | 0.63 | 0.00 | 2.25 |
CcL | In ants, during behavior modification | 6.95 | 0.77 | 13.13 |
CcD | In ants, recently dead | 2.02 | 0.00 | 5.30 |
Differential expression
Label1 | Label2 | Q-value | Significant difference |
---|---|---|---|
SC16a | CcL | 0.239606 | no |
SC16a | CcD | 1.000000 | no |
CcL | CcD | 0.288966 | no |
Orthofinder run ID | 4 |
Orthogroup | 15708 |
Change Orthofinder run |
Species | Protein ID |
---|---|
Ophiocordyceps kimflemingae | Ophio5|2499 (this protein) |
Type of sequence | Sequence |
---|---|
Locus | Download genbank file of locus
Download genbank file of locus (reverse complement)
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
Protein | >Ophio5|2499 MSPPTHHPLTPSSLLFLTLFFFGGRGGKTDEGAPRSVSCRRRRLASDRCLLHTTSIEQLDESSRGKADEQSPEFE |
Coding | >Ophio5|2499 ATGTCGCCCCCCACCCACCACCCTCTTACCCCTTCTTCTCTGCTCTTCCTCACCCTGTTTTTTTTTGGGGGGAGG GGGGGGAAGACAGACGAGGGCGCGCCGCGGTCCGTCTCTTGTCGCCGTCGCCGTCTCGCGAGCGACAGATGCCTC TTGCACACTACCTCGATTGAACAGCTGGACGAGTCGTCTCGGGGGAAAGCGGACGAGCAAAGTCCAGAGTTCGAA |
Transcript | >Ophio5|2499 ATGTCGCCCCCCACCCACCACCCTCTTACCCCTTCTTCTCTGCTCTTCCTCACCCTGTTTTTTTTTGGGGGGAGG GGGGGGAAGACAGACGAGGGCGCGCCGCGGTCCGTCTCTTGTCGCCGTCGCCGTCTCGCGAGCGACAGATGCCTC TTGCACACTACCTCGATTGAACAGCTGGACGAGTCGTCTCGGGGGAAAGCGGACGAGCAAAGTCCAGAGTTCGAA TAA |
Gene | >Ophio5|2499 ATGTCGCCCCCCACCCACCACCCTCTTACCCCTTCTTCTCTGCTCTTCCTCACCCTGTTTTTTTTTGGGGGGAGG GGGGGGAAGACAGACGAGGGCGCGCCGCGGTCCGTCTCTTGTCGCCGTCGCCGTCTCGGTCGGTCTATATAACCC CATCAACTGCTGAGCATCATCACACTGACAAACCGGTCAAAGCGAGCGACAGATGCCTCTTGCACACTACCTCGA TTGAACAGCTGGACGAGTCGTCTCGGGGGAAAGCGGACGAGCAAAGTCCAGAGTTCGAATAA |