Fungal Genomics

at Utrecht University

General Properties

Protein IDOphio5|2499
Gene name
Locationscaffold_206:25695..25982
Strand-
Gene length (bp)287
Transcript length (bp)228
Coding sequence length (bp)225
Protein length (aa) 75

Overview

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PFAM Domains

(None)

Swissprot hits

(None)

GO

(None)

Deeploc

[Help with interpreting the results of Deeploc 2.0]
Localizations Signals Cytoplasm Nucleus Extracellular Cell membrane Mitochondrion Plastid Endoplasmic reticulum Lysosome vacuole Golgi apparatus Peroxisome
Nucleus 0.427 0.5739 0.1959 0.1394 0.2245 0.253 0.1964 0.2269 0.0931 0.0248

SignalP

(None)

Transmembrane Domains

(None)

Transcription Factor Class

(None)

CAZymes

(None)

Secondary Metabolism

(None)

Expression data

Analysis 1: Expression analysis during behavioral modification. Published in De Bekker et al., 2017.

Expression values

Label Description Expression (RPKM) Confidence interval (low) Confidence interval (high)
SC16a Pure fungal culture 0.63 0.00 2.25
CcL In ants, during behavior modification 6.95 0.77 13.13
CcD In ants, recently dead 2.02 0.00 5.30

Differential expression

Label1 Label2 Q-value Significant difference
SC16a CcL 0.239606 no
SC16a CcD 1.000000 no
CcL CcD 0.288966 no

Orthologs

Orthofinder run ID4
Orthogroup15708
Change Orthofinder run
Species Protein ID
Ophiocordyceps kimflemingae Ophio5|2499 (this protein)

Sequences

Type of sequenceSequence
Locus Download genbank file of locus Download genbank file of locus (reverse complement)
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein >Ophio5|2499
MSPPTHHPLTPSSLLFLTLFFFGGRGGKTDEGAPRSVSCRRRRLASDRCLLHTTSIEQLDESSRGKADEQSPEFE
Coding >Ophio5|2499
ATGTCGCCCCCCACCCACCACCCTCTTACCCCTTCTTCTCTGCTCTTCCTCACCCTGTTTTTTTTTGGGGGGAGG
GGGGGGAAGACAGACGAGGGCGCGCCGCGGTCCGTCTCTTGTCGCCGTCGCCGTCTCGCGAGCGACAGATGCCTC
TTGCACACTACCTCGATTGAACAGCTGGACGAGTCGTCTCGGGGGAAAGCGGACGAGCAAAGTCCAGAGTTCGAA
Transcript >Ophio5|2499
ATGTCGCCCCCCACCCACCACCCTCTTACCCCTTCTTCTCTGCTCTTCCTCACCCTGTTTTTTTTTGGGGGGAGG
GGGGGGAAGACAGACGAGGGCGCGCCGCGGTCCGTCTCTTGTCGCCGTCGCCGTCTCGCGAGCGACAGATGCCTC
TTGCACACTACCTCGATTGAACAGCTGGACGAGTCGTCTCGGGGGAAAGCGGACGAGCAAAGTCCAGAGTTCGAA
TAA
Gene >Ophio5|2499
ATGTCGCCCCCCACCCACCACCCTCTTACCCCTTCTTCTCTGCTCTTCCTCACCCTGTTTTTTTTTGGGGGGAGG
GGGGGGAAGACAGACGAGGGCGCGCCGCGGTCCGTCTCTTGTCGCCGTCGCCGTCTCGGTCGGTCTATATAACCC
CATCAACTGCTGAGCATCATCACACTGACAAACCGGTCAAAGCGAGCGACAGATGCCTCTTGCACACTACCTCGA
TTGAACAGCTGGACGAGTCGTCTCGGGGGAAAGCGGACGAGCAAAGTCCAGAGTTCGAATAA

© 2023 - Robin Ohm - Utrecht University - The Netherlands

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