© 2022 - Robin Ohm - Utrecht University - The Netherlands
Built with Python Django and Wagtail
| Protein ID | Ophio5|2489 |
| Gene name | |
| Location | scaffold_205:28984..30396 |
| Strand | - |
| Gene length (bp) | 1412 |
| Transcript length (bp) | 1281 |
| Coding sequence length (bp) | 1278 |
| Protein length (aa) | 426 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF11735 | CAP59_mtransfer | Cryptococcal mannosyltransferase 1 | 3.8E-85 | 77 | 328 |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 61 | 0.5 |
| Domain # | Start | End | Length |
|---|---|---|---|
| 1 | 34 | 56 | 22 |
Expression values
| Label | Description | Expression (RPKM) | Confidence interval (low) | Confidence interval (high) |
|---|---|---|---|---|
| SC16a | Pure fungal culture | 54.30 | 29.31 | 79.29 |
| CcL | In ants, during behavior modification | 127.75 | 58.55 | 196.95 |
| CcD | In ants, recently dead | 54.76 | 29.76 | 79.75 |
Differential expression
| Label1 | Label2 | Q-value | Significant difference |
|---|---|---|---|
| SC16a | CcL | 0.000770 | yes |
| SC16a | CcD | 0.976589 | no |
| CcL | CcD | 0.000535 | yes |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Ophio5|2489 MLPLKLGKLTRIQWPRSLRSGDARTMRLRRTLRWRTVRLLALLFCLFSVLEVLWIHGKLAGGDQQRSTTDPSRPH ERIYIASMHFNNGDILRHHWNDAVIRLTEVFGPANVFVSILESGSWDDSKELLQELARELERRGVPHRVEISDVT HHDEIAKEAKGAGWIDTPRNRRELRRIPYLARLRNKTIQDLLDLGEKGTTFDKVLFLNDVVFTTEDVLTLMDTNG GDYGAACSLDFSKPPLYYDTFALRDAEGNGHVMQTWPYLGARLSRNALVNHLDAVPVASCWNGIVVMPAEPFVSS TKLRFRGIPDSLAAYHLEGSECCLIHADNPLSKTLGVYLNPRVRVGYNLAAYDATHRGTTWVSAWGIFTGLWINR IRRWTTFTLDNVVVNRRVKRWERKHVGSHEPGRFCLINEMQVLADNGWAHV |
| Coding | >Ophio5|2489 ATGCTGCCTCTCAAGCTCGGCAAGCTGACCAGAATCCAATGGCCTCGGTCGCTGCGCTCGGGAGACGCCCGCACA ATGCGCCTCCGCCGGACCCTGCGATGGCGAACAGTGAGGCTTCTGGCCTTGCTCTTCTGCCTCTTCAGCGTCCTC GAAGTGCTCTGGATCCACGGCAAGCTCGCCGGCGGCGACCAACAACGAAGCACGACCGACCCTTCGCGGCCGCAC GAGCGCATCTACATCGCGAGCATGCACTTCAACAACGGCGACATCCTGAGGCATCACTGGAATGATGCGGTGATC CGGCTCACGGAGGTGTTCGGGCCGGCCAACGTCTTCGTGAGCATCTTGGAAAGCGGCAGCTGGGACGACAGCAAG GAGCTTCTCCAGGAACTGGCGCGCGAGCTTGAGCGGCGAGGCGTGCCGCATCGGGTGGAAATATCCGACGTGACA CATCATGATGAGATCGCCAAGGAGGCTAAGGGCGCGGGGTGGATCGACACGCCCCGGAACAGGAGGGAGCTGCGG CGCATCCCTTACCTCGCGCGGTTGCGCAACAAGACGATTCAAGACCTGCTGGACCTCGGCGAGAAGGGCACCACC TTTGACAAGGTGCTGTTCCTCAACGACGTCGTCTTCACGACCGAAGACGTGTTGACGCTCATGGACACGAATGGC GGCGACTACGGCGCCGCATGCTCGCTCGACTTCTCCAAGCCACCTCTCTACTACGACACGTTTGCGCTGAGGGAC GCCGAGGGCAACGGACATGTCATGCAGACGTGGCCCTACCTCGGAGCCAGGCTGTCGAGGAATGCGCTGGTGAAC CATCTTGACGCCGTGCCCGTGGCGAGCTGTTGGAACGGCATAGTGGTAATGCCTGCGGAGCCTTTCGTCTCGTCG ACGAAGCTGCGCTTTCGCGGGATCCCCGACTCGCTTGCGGCGTACCACCTCGAGGGCTCCGAGTGCTGCCTCATC CACGCCGACAACCCGCTGTCTAAGACGTTGGGCGTGTACCTCAATCCGCGGGTGCGCGTGGGCTACAACCTGGCG GCCTACGACGCGACACATCGCGGCACCACATGGGTGTCCGCGTGGGGTATTTTCACGGGCCTGTGGATTAACCGC ATCAGACGCTGGACGACGTTTACGCTCGACAACGTCGTCGTCAACCGGCGGGTTAAGCGCTGGGAAAGGAAGCAC GTCGGGAGCCATGAGCCGGGCAGGTTCTGCTTGATTAACGAGATGCAGGTTCTCGCCGACAATGGCTGGGCCCAC GTC |
| Transcript | >Ophio5|2489 ATGCTGCCTCTCAAGCTCGGCAAGCTGACCAGAATCCAATGGCCTCGGTCGCTGCGCTCGGGAGACGCCCGCACA ATGCGCCTCCGCCGGACCCTGCGATGGCGAACAGTGAGGCTTCTGGCCTTGCTCTTCTGCCTCTTCAGCGTCCTC GAAGTGCTCTGGATCCACGGCAAGCTCGCCGGCGGCGACCAACAACGAAGCACGACCGACCCTTCGCGGCCGCAC GAGCGCATCTACATCGCGAGCATGCACTTCAACAACGGCGACATCCTGAGGCATCACTGGAATGATGCGGTGATC CGGCTCACGGAGGTGTTCGGGCCGGCCAACGTCTTCGTGAGCATCTTGGAAAGCGGCAGCTGGGACGACAGCAAG GAGCTTCTCCAGGAACTGGCGCGCGAGCTTGAGCGGCGAGGCGTGCCGCATCGGGTGGAAATATCCGACGTGACA CATCATGATGAGATCGCCAAGGAGGCTAAGGGCGCGGGGTGGATCGACACGCCCCGGAACAGGAGGGAGCTGCGG CGCATCCCTTACCTCGCGCGGTTGCGCAACAAGACGATTCAAGACCTGCTGGACCTCGGCGAGAAGGGCACCACC TTTGACAAGGTGCTGTTCCTCAACGACGTCGTCTTCACGACCGAAGACGTGTTGACGCTCATGGACACGAATGGC GGCGACTACGGCGCCGCATGCTCGCTCGACTTCTCCAAGCCACCTCTCTACTACGACACGTTTGCGCTGAGGGAC GCCGAGGGCAACGGACATGTCATGCAGACGTGGCCCTACCTCGGAGCCAGGCTGTCGAGGAATGCGCTGGTGAAC CATCTTGACGCCGTGCCCGTGGCGAGCTGTTGGAACGGCATAGTGGTAATGCCTGCGGAGCCTTTCGTCTCGTCG ACGAAGCTGCGCTTTCGCGGGATCCCCGACTCGCTTGCGGCGTACCACCTCGAGGGCTCCGAGTGCTGCCTCATC CACGCCGACAACCCGCTGTCTAAGACGTTGGGCGTGTACCTCAATCCGCGGGTGCGCGTGGGCTACAACCTGGCG GCCTACGACGCGACACATCGCGGCACCACATGGGTGTCCGCGTGGGGTATTTTCACGGGCCTGTGGATTAACCGC ATCAGACGCTGGACGACGTTTACGCTCGACAACGTCGTCGTCAACCGGCGGGTTAAGCGCTGGGAAAGGAAGCAC GTCGGGAGCCATGAGCCGGGCAGGTTCTGCTTGATTAACGAGATGCAGGTTCTCGCCGACAATGGCTGGGCCCAC GTCTGA |
| Gene | >Ophio5|2489 ATGCTGCCTCTCAAGCTCGGCAAGCTGACCAGAATCCAATGGCCTCGGTCGCTGCGCTCGGGAGACGCCCGCACA ATGCGCCTCCGCCGGACCCTGCGATGGCGAACAGTGAGGCTTCTGGCCTTGCTCTTCTGCCTCTTCAGCGTCCTC GAAGTGCTCTGGATCCACGGCAAGCTCGCCGGCGGCGACCAACAACGAAGCACGACCGACCCTTCGCGGCCGCAC GAGCGCATCTACATCGCGAGCATGCACTTCAACAACGGCGACATCCTGAGGCATCACTGGAATGATGCGGTGATC CGGCTCACGGAGGTGTTCGGGCCGGCCAACGTCTTCGTGAGCATCTTGGAAAGCGGCAGCTGGGACGACAGCAAG GAGCTTCTCCAGGAACTGGCGCGCGAGCTTGAGCGGCGAGGCGTGCCGCATCGGGTGGAAATATCCGACGTGACA CATCATGATGAGATCGCCAAGGAGGCTAAGGGCGCGGGGTGGATCGACACGCCCCGGAACAGGAGGGAGCTGCGG CGCATCCCTTACCTCGCGCGGTTGCGCAACAAGACGATTCAAGACCTGCTGGACCTCGGCGAGAAGGGCACCACC TTTGACAAGGTGCTGTTCCTCAACGACGTCGTCTTCACGGTGGGTGATGCCGCTGTCGCTAACAACCCTCAGAGA CCAAGCTGCTGACGACGCGAGAGAGCAAGACCGAAGACGTGTTGACGCTCATGGACACGAATGGCGGCGACTACG GCGCCGCATGCTCGCTCGACTTCTCCAAGCCACCTCTCTACTACGACACGTTTGCGCTGAGGGACGCCGAGGGCA ACGGACATGTCATGCAGACGTGGCCCTACCTCGGAGCCAGGCTGTCGAGGAATGCGCTGGTGAACCATCTTGACG CCGTGCCCGTGGCGAGCTGTTGGAACGGCATAGGTACAGACACGCTATCCTTTTCCAGGATGGACCGAAAGCGGG CAAGCTGACGCGGTTCGGTCGCAGTGGTAATGCCTGCGGAGCCTTTCGTCTCGTCGACGAAGCTGCGCTTTCGCG GGATCCCCGACTCGCTTGCGGCGTACCACCTCGAGGGCTCCGAGTGCTGCCTCATCCACGCCGACAACCCGCTGT CTAAGACGTTGGGCGTGTACCTCAATCCGCGGGTGCGCGTGGGCTACAACCTGGCGGCCTACGACGCGACACATC GCGGCACCACATGGGTGTCCGCGTGGGGTATTTTCACGGGCCTGTGGATTAACCGCATCAGACGCTGGACGACGT TTACGCTCGACAACGTCGTCGTCAACCGGCGGGTTAAGCGCTGGGAAAGGAAGCACGTCGGGAGCCATGAGCCGG GCAGGTTCTGCTTGATTAACGAGATGCAGGTTCTCGCCGACAATGGCTGGGCCCACGTCTGA |