© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Ophio5|2443 |
| Gene name | |
| Location | scaffold_202:12590..14447 |
| Strand | - |
| Gene length (bp) | 1857 |
| Transcript length (bp) | 1785 |
| Coding sequence length (bp) | 1782 |
| Protein length (aa) | 594 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF04258 | Peptidase_A22B | Signal peptide peptidase | 1.9E-33 | 77 | 361 |
| PF04258 | Peptidase_A22B | Signal peptide peptidase | 6.6E-19 | 432 | 495 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|P49049|IMP2_CAEEL | Intramembrane protease 2 OS=Caenorhabditis elegans GN=imp-2 PE=1 SV=1 | 247 | 501 | 3.0E-22 |
| sp|P34248|YKK0_YEAST | Probable intramembrane protease YKL100C OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=YKL100C PE=1 SV=1 | 225 | 556 | 8.0E-20 |
| sp|Q6ZGL9|SIP1_ORYSJ | Signal peptide peptidase 1 OS=Oryza sativa subsp. japonica GN=SPP1 PE=2 SV=1 | 226 | 357 | 1.0E-18 |
| sp|O81062|SIP_ARATH | Signal peptide peptidase OS=Arabidopsis thaliana GN=SPP PE=2 SV=1 | 260 | 357 | 2.0E-17 |
| sp|B9FJ61|SIP2_ORYSJ | Signal peptide peptidase 2 OS=Oryza sativa subsp. japonica GN=SPP2 PE=2 SV=1 | 267 | 357 | 5.0E-17 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|P49049|IMP2_CAEEL | Intramembrane protease 2 OS=Caenorhabditis elegans GN=imp-2 PE=1 SV=1 | 247 | 501 | 3.0E-22 |
| sp|P34248|YKK0_YEAST | Probable intramembrane protease YKL100C OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=YKL100C PE=1 SV=1 | 225 | 556 | 8.0E-20 |
| sp|Q6ZGL9|SIP1_ORYSJ | Signal peptide peptidase 1 OS=Oryza sativa subsp. japonica GN=SPP1 PE=2 SV=1 | 226 | 357 | 1.0E-18 |
| sp|O81062|SIP_ARATH | Signal peptide peptidase OS=Arabidopsis thaliana GN=SPP PE=2 SV=1 | 260 | 357 | 2.0E-17 |
| sp|B9FJ61|SIP2_ORYSJ | Signal peptide peptidase 2 OS=Oryza sativa subsp. japonica GN=SPP2 PE=2 SV=1 | 267 | 357 | 5.0E-17 |
| sp|Q9UTA3|YL8H_SCHPO | Probable intramembrane protease C25B8.17 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPAC25B8.17 PE=3 SV=1 | 237 | 360 | 1.0E-16 |
| sp|Q7G7C7|SIPL1_ORYSJ | Signal peptide peptidase-like 1 OS=Oryza sativa subsp. japonica GN=SPPL1 PE=2 SV=1 | 236 | 492 | 6.0E-15 |
| sp|Q8TCT6|SPPL3_HUMAN | Signal peptide peptidase-like 3 OS=Homo sapiens GN=SPPL3 PE=1 SV=1 | 245 | 492 | 2.0E-13 |
| sp|Q9CUS9|SPPL3_MOUSE | Signal peptide peptidase-like 3 OS=Mus musculus GN=Sppl3 PE=1 SV=3 | 245 | 492 | 3.0E-13 |
| sp|Q9D8V0|HM13_MOUSE | Minor histocompatibility antigen H13 OS=Mus musculus GN=Hm13 PE=1 SV=1 | 252 | 359 | 1.0E-11 |
| sp|Q8TCT9|HM13_HUMAN | Minor histocompatibility antigen H13 OS=Homo sapiens GN=HM13 PE=1 SV=1 | 252 | 359 | 2.0E-11 |
| sp|Q9D8V0|HM13_MOUSE | Minor histocompatibility antigen H13 OS=Mus musculus GN=Hm13 PE=1 SV=1 | 435 | 500 | 2.0E-09 |
| sp|Q8TCT9|HM13_HUMAN | Minor histocompatibility antigen H13 OS=Homo sapiens GN=HM13 PE=1 SV=1 | 435 | 504 | 3.0E-09 |
| sp|Q9JJF9|SPP2A_MOUSE | Signal peptide peptidase-like 2A OS=Mus musculus GN=Sppl2a PE=1 SV=2 | 437 | 503 | 4.0E-09 |
| sp|Q53P98|SIPL2_ORYSJ | Signal peptide peptidase-like 2 OS=Oryza sativa subsp. japonica GN=SPPL2 PE=2 SV=1 | 335 | 503 | 1.0E-08 |
| sp|B9FJ61|SIP2_ORYSJ | Signal peptide peptidase 2 OS=Oryza sativa subsp. japonica GN=SPP2 PE=2 SV=1 | 434 | 511 | 4.0E-08 |
| sp|Q8TCT8|SPP2A_HUMAN | Signal peptide peptidase-like 2A OS=Homo sapiens GN=SPPL2A PE=1 SV=2 | 437 | 507 | 4.0E-08 |
| sp|Q6ZGL9|SIP1_ORYSJ | Signal peptide peptidase 1 OS=Oryza sativa subsp. japonica GN=SPP1 PE=2 SV=1 | 434 | 496 | 1.0E-07 |
| sp|Q93Z32|SIPL1_ARATH | Signal peptide peptidase-like 1 OS=Arabidopsis thaliana GN=SPPL1 PE=2 SV=1 | 240 | 356 | 2.0E-07 |
| sp|Q9UTA3|YL8H_SCHPO | Probable intramembrane protease C25B8.17 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPAC25B8.17 PE=3 SV=1 | 434 | 501 | 3.0E-06 |
| sp|Q5N808|SIPL3_ORYSJ | Signal peptide peptidase-like 3 OS=Oryza sativa subsp. japonica GN=SPPL3 PE=2 SV=1 | 437 | 492 | 3.0E-06 |
| sp|Q0WMJ8|SIPL4_ARATH | Signal peptide peptidase-like 4 OS=Arabidopsis thaliana GN=SPPL4 PE=2 SV=1 | 428 | 495 | 6.0E-06 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0016021 | integral component of membrane | Yes |
| GO:0004190 | aspartic-type endopeptidase activity | Yes |
| GO:0016787 | hydrolase activity | No |
| GO:0110165 | cellular anatomical entity | No |
| GO:0140096 | catalytic activity, acting on a protein | No |
| GO:0004175 | endopeptidase activity | No |
| GO:0031224 | intrinsic component of membrane | No |
| GO:0070001 | aspartic-type peptidase activity | No |
| GO:0003824 | catalytic activity | No |
| GO:0005575 | cellular_component | No |
| GO:0008233 | peptidase activity | No |
| GO:0003674 | molecular_function | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 22 | 0.5 |
| Domain # | Start | End | Length |
|---|---|---|---|
| 1 | 26 | 48 | 22 |
| 2 | 82 | 100 | 18 |
| 3 | 121 | 143 | 22 |
| 4 | 240 | 262 | 22 |
| 5 | 267 | 284 | 17 |
| 6 | 294 | 316 | 22 |
| 7 | 336 | 355 | 19 |
| 8 | 437 | 459 | 22 |
| 9 | 466 | 483 | 17 |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Ophio5|2443 MSAEPLAPMEAPASTSPLAFLQERHFLLLELKLLAGAVGIIYVGAHAALRRPPSASPVKRDSKKADEEDDGPVSQ GLELSDAIAFPLMAAAMLIGLYYLIQWLQDPALLNKMLRSYMSAMSLASLTTLFAHGLDVLSSAIFPTWWRGGDG LLRRADQRACAVVVCDDGGNAFVDGKLDDADKAIVAGKFDTLPRQGPLPGFLGLLTRSARARRLVWAVRGVLTRR WVARFFVHGVVDDKTSIKFSHIMGLLLSAATAVVYFWTSSPLLSNLLGYSLCYGSFLILSPTDLLTGSLVLVGLF VYDIVMVFYTPYMLTVATQLDVPIKLTFQSAARKSMLGLGDIVLPGMLMGWALRLDLYLHYLRKVKYESAELKVI ERDASSGEIVSRTETKHKEVKARYANVKGRWGDALWTRGLLFLSSPRQLPVELAAASFRKTYFHATVAGYTLGLA VTMAMLLVFEKGQPALLYLVPGVLGSLMVTAWARGEMGDVWKYSEDGSLDTVDVVVDLDAEGRVVKTVGKAEDGV VDTTRDKDKDGSSKKDGDGKDGSRKKDDDGKDGSRKKDDNGKDGGGGRDKGRQIMLLSLEAASDCKEDD |
| Coding | >Ophio5|2443 ATGTCGGCCGAACCTCTGGCGCCCATGGAAGCGCCGGCATCGACTTCACCCCTAGCCTTCCTCCAGGAGCGTCAT TTTTTACTTCTGGAGCTGAAGCTTCTCGCCGGCGCCGTCGGCATCATCTACGTCGGAGCCCACGCCGCACTACGC CGCCCGCCCTCGGCATCACCCGTCAAGCGCGACAGTAAGAAAGCCGACGAGGAAGACGATGGGCCTGTTTCGCAA GGTCTGGAACTATCCGATGCCATCGCGTTTCCGCTCATGGCCGCGGCGATGCTCATCGGACTGTACTATCTGATC CAGTGGCTTCAGGATCCGGCTTTACTGAATAAGATGCTGAGATCGTACATGTCAGCCATGTCTTTGGCGAGCTTG ACGACCTTGTTTGCTCATGGTCTTGACGTGCTCTCGTCGGCCATTTTCCCGACGTGGTGGCGTGGGGGGGATGGG CTGCTGAGGAGGGCTGACCAGAGGGCTTGCGCTGTGGTTGTTTGTGATGATGGGGGTAATGCCTTCGTTGACGGC AAGCTCGACGACGCGGATAAGGCCATCGTCGCCGGCAAATTCGATACGCTGCCCAGACAGGGGCCGCTTCCGGGC TTTCTGGGCCTGCTTACCCGCTCGGCGAGGGCGAGGCGCTTGGTCTGGGCTGTTCGCGGCGTCTTGACCAGGCGC TGGGTCGCCCGGTTCTTCGTCCATGGCGTCGTCGATGACAAGACCAGCATCAAGTTCTCTCACATCATGGGCTTG CTGCTCTCTGCCGCTACGGCGGTCGTCTACTTTTGGACCTCGTCGCCCTTGCTCTCCAACCTGTTGGGATATAGT CTTTGCTATGGATCGTTTCTCATCCTGTCGCCTACGGACTTGCTCACGGGCTCTCTTGTTCTCGTTGGCCTCTTC GTCTACGACATTGTCATGGTATTCTATACACCGTACATGTTGACCGTCGCCACCCAGCTGGATGTTCCCATCAAG CTCACCTTTCAGTCTGCCGCTCGGAAAAGCATGTTGGGTCTGGGAGACATCGTCCTCCCGGGCATGCTCATGGGA TGGGCGCTGCGCCTTGACCTCTACCTGCACTACCTGCGCAAGGTCAAGTACGAGTCCGCCGAGCTGAAAGTCATC GAGCGGGACGCGTCGTCGGGCGAGATTGTGTCGCGGACCGAGACGAAGCACAAGGAGGTCAAGGCACGGTACGCC AATGTCAAGGGCCGGTGGGGAGACGCCTTGTGGACGCGCGGCCTGCTTTTTCTCTCGAGCCCGCGACAGCTGCCG GTCGAGCTGGCGGCGGCGAGCTTCCGCAAGACGTACTTTCACGCCACCGTTGCCGGCTACACGCTGGGGCTGGCC GTCACCATGGCGATGCTGCTCGTCTTCGAGAAGGGCCAGCCGGCGCTGCTGTACCTCGTCCCCGGCGTGCTCGGC TCCCTGATGGTGACGGCGTGGGCCCGAGGCGAGATGGGCGACGTTTGGAAGTACAGCGAGGACGGCAGCCTCGAC ACCGTGGACGTGGTCGTCGACCTCGACGCCGAGGGGAGGGTGGTCAAGACGGTTGGTAAGGCCGAAGATGGGGTC GTGGACACGACTCGAGACAAGGACAAGGATGGCAGCAGCAAGAAGGACGGCGATGGCAAGGACGGCAGCCGCAAA AAGGACGACGACGGCAAGGACGGCAGCCGCAAAAAGGACGACAATGGTAAGGACGGCGGTGGCGGAAGGGACAAG GGCCGTCAGATCATGTTGCTGTCGCTCGAGGCGGCGTCGGACTGCAAAGAGGATGAC |
| Transcript | >Ophio5|2443 ATGTCGGCCGAACCTCTGGCGCCCATGGAAGCGCCGGCATCGACTTCACCCCTAGCCTTCCTCCAGGAGCGTCAT TTTTTACTTCTGGAGCTGAAGCTTCTCGCCGGCGCCGTCGGCATCATCTACGTCGGAGCCCACGCCGCACTACGC CGCCCGCCCTCGGCATCACCCGTCAAGCGCGACAGTAAGAAAGCCGACGAGGAAGACGATGGGCCTGTTTCGCAA GGTCTGGAACTATCCGATGCCATCGCGTTTCCGCTCATGGCCGCGGCGATGCTCATCGGACTGTACTATCTGATC CAGTGGCTTCAGGATCCGGCTTTACTGAATAAGATGCTGAGATCGTACATGTCAGCCATGTCTTTGGCGAGCTTG ACGACCTTGTTTGCTCATGGTCTTGACGTGCTCTCGTCGGCCATTTTCCCGACGTGGTGGCGTGGGGGGGATGGG CTGCTGAGGAGGGCTGACCAGAGGGCTTGCGCTGTGGTTGTTTGTGATGATGGGGGTAATGCCTTCGTTGACGGC AAGCTCGACGACGCGGATAAGGCCATCGTCGCCGGCAAATTCGATACGCTGCCCAGACAGGGGCCGCTTCCGGGC TTTCTGGGCCTGCTTACCCGCTCGGCGAGGGCGAGGCGCTTGGTCTGGGCTGTTCGCGGCGTCTTGACCAGGCGC TGGGTCGCCCGGTTCTTCGTCCATGGCGTCGTCGATGACAAGACCAGCATCAAGTTCTCTCACATCATGGGCTTG CTGCTCTCTGCCGCTACGGCGGTCGTCTACTTTTGGACCTCGTCGCCCTTGCTCTCCAACCTGTTGGGATATAGT CTTTGCTATGGATCGTTTCTCATCCTGTCGCCTACGGACTTGCTCACGGGCTCTCTTGTTCTCGTTGGCCTCTTC GTCTACGACATTGTCATGGTATTCTATACACCGTACATGTTGACCGTCGCCACCCAGCTGGATGTTCCCATCAAG CTCACCTTTCAGTCTGCCGCTCGGAAAAGCATGTTGGGTCTGGGAGACATCGTCCTCCCGGGCATGCTCATGGGA TGGGCGCTGCGCCTTGACCTCTACCTGCACTACCTGCGCAAGGTCAAGTACGAGTCCGCCGAGCTGAAAGTCATC GAGCGGGACGCGTCGTCGGGCGAGATTGTGTCGCGGACCGAGACGAAGCACAAGGAGGTCAAGGCACGGTACGCC AATGTCAAGGGCCGGTGGGGAGACGCCTTGTGGACGCGCGGCCTGCTTTTTCTCTCGAGCCCGCGACAGCTGCCG GTCGAGCTGGCGGCGGCGAGCTTCCGCAAGACGTACTTTCACGCCACCGTTGCCGGCTACACGCTGGGGCTGGCC GTCACCATGGCGATGCTGCTCGTCTTCGAGAAGGGCCAGCCGGCGCTGCTGTACCTCGTCCCCGGCGTGCTCGGC TCCCTGATGGTGACGGCGTGGGCCCGAGGCGAGATGGGCGACGTTTGGAAGTACAGCGAGGACGGCAGCCTCGAC ACCGTGGACGTGGTCGTCGACCTCGACGCCGAGGGGAGGGTGGTCAAGACGGTTGGTAAGGCCGAAGATGGGGTC GTGGACACGACTCGAGACAAGGACAAGGATGGCAGCAGCAAGAAGGACGGCGATGGCAAGGACGGCAGCCGCAAA AAGGACGACGACGGCAAGGACGGCAGCCGCAAAAAGGACGACAATGGTAAGGACGGCGGTGGCGGAAGGGACAAG GGCCGTCAGATCATGTTGCTGTCGCTCGAGGCGGCGTCGGACTGCAAAGAGGATGACTAG |
| Gene | >Ophio5|2443 ATGTCGGCCGAACCTCTGGCGCCCATGGAAGCGCCGGCATCGACTTCACCCCTAGCCTTCCTCCAGGAGCGTCAT TTTTTACTTCTGGAGCTGAAGCTTCTCGCCGGCGCCGTCGGCATCATCTACGTCGGAGCCCACGCCGCACTACGC CGCCCGCCCTCGGCATCACCCGTCAAGCGCGACAGTAAGAAAGCCGACGAGGAAGACGATGGGCCTGTTTCGCAA GGTCTGGAACTATCCGATGCCATCGCGTTTCCGCTCATGGCCGCGGCGATGCTCATCGGACTGTACTATCTGATC CAGTGGCTTCAGGATCCGGCTTTACTGAATAAGATGCTGAGATCGTACATGTCAGCCATGTCTTTGGCGAGCTTG ACGACCTTGTTTGCTCATGGTCTTGACGTGCTCTCGTCGGCCATTTTCCCGACGTGGTGGCGTGGGGGGGATGGG CTGCTGAGGAGGGCTGACCAGAGGGCTTGCGCTGTGGTTGTTTGTGATGATGGGGGTAATGCCTTCGTTGACGGC AAGCTCGACGACGCGGATAAGGCCATCGTCGCCGGCAAATTCGATACGCTGCCCAGACAGGGGCCGCTTCCGGGC TTTCTGGGCCTGCTTACCCGCTCGGCGAGGGCGAGGCGCTTGGTCTGGGCTGTTCGCGGCGTCTTGACCAGGCGC TGGGTCGCCCGGTTCTTCGTCCATGGCGTCGTCGATGACAAGACCAGCATCAAGTTCTCTCACATCATGGGCTTG CTGCTCTCTGCCGCTACGGCGGTCGTCTACTTTTGGACCTCGTCGCCCTTGCTCTCCAACCTGTTGGGATATAGT CTTTGCTATGGATCGTTTCTCATCCTGTCGCCTACGGACTTGCTCACGGGCTCTCTTGTTCTCGTTGGCCTCTTC GTCTACGACATTGTCATGGTATTCTATACGTGCGTCTCTCCTCTGCCCCCCCCCCCCTTTCTCCGTCTTCCCCCG GCCATGAACTAACGACCGTCACCCAGACCGTACATGTTGACCGTCGCCACCCAGCTGGATGTTCCCATCAAGCTC ACCTTTCAGTCTGCCGCTCGGAAAAGCATGTTGGGTCTGGGAGACATCGTCCTCCCGGGCATGCTCATGGGATGG GCGCTGCGCCTTGACCTCTACCTGCACTACCTGCGCAAGGTCAAGTACGAGTCCGCCGAGCTGAAAGTCATCGAG CGGGACGCGTCGTCGGGCGAGATTGTGTCGCGGACCGAGACGAAGCACAAGGAGGTCAAGGCACGGTACGCCAAT GTCAAGGGCCGGTGGGGAGACGCCTTGTGGACGCGCGGCCTGCTTTTTCTCTCGAGCCCGCGACAGCTGCCGGTC GAGCTGGCGGCGGCGAGCTTCCGCAAGACGTACTTTCACGCCACCGTTGCCGGCTACACGCTGGGGCTGGCCGTC ACCATGGCGATGCTGCTCGTCTTCGAGAAGGGCCAGCCGGCGCTGCTGTACCTCGTCCCCGGCGTGCTCGGCTCC CTGATGGTGACGGCGTGGGCCCGAGGCGAGATGGGCGACGTTTGGAAGTACAGCGAGGACGGCAGCCTCGACACC GTGGACGTGGTCGTCGACCTCGACGCCGAGGGGAGGGTGGTCAAGACGGTTGGTAAGGCCGAAGATGGGGTCGTG GACACGACTCGAGACAAGGACAAGGATGGCAGCAGCAAGAAGGACGGCGATGGCAAGGACGGCAGCCGCAAAAAG GACGACGACGGCAAGGACGGCAGCCGCAAAAAGGACGACAATGGTAAGGACGGCGGTGGCGGAAGGGACAAGGGC CGTCAGATCATGTTGCTGTCGCTCGAGGCGGCGTCGGACTGCAAAGAGGATGACTAG |