© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Ophio5|2438 |
| Gene name | |
| Location | scaffold_202:2341..3285 |
| Strand | + |
| Gene length (bp) | 944 |
| Transcript length (bp) | 885 |
| Coding sequence length (bp) | 882 |
| Protein length (aa) | 294 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF00722 | Glyco_hydro_16 | Glycosyl hydrolases family 16 | 4.7E-08 | 90 | 250 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|P23903|E13B_BACCI | Glucan endo-1,3-beta-glucosidase A1 OS=Bacillus circulans GN=glcA PE=1 SV=1 | 36 | 253 | 2.0E-16 |
| sp|P45798|GUB_RHOMR | Beta-glucanase OS=Rhodothermus marinus GN=bglA PE=1 SV=1 | 48 | 245 | 4.0E-13 |
| sp|Q9Z3Q2|EGLC_RHIME | Endo-1,3-1,4-beta-glycanase EglC OS=Rhizobium meliloti (strain 1021) GN=eglC PE=3 SV=2 | 62 | 256 | 5.0E-10 |
| sp|O33680|EXSH_RHIME | Endo-1,3-1,4-beta-glycanase ExsH OS=Rhizobium meliloti (strain 1021) GN=exsH PE=1 SV=1 | 74 | 259 | 5.0E-08 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0004553 | hydrolase activity, hydrolyzing O-glycosyl compounds | Yes |
| GO:0005975 | carbohydrate metabolic process | Yes |
| GO:0016787 | hydrolase activity | No |
| GO:0071704 | organic substance metabolic process | No |
| GO:0044238 | primary metabolic process | No |
| GO:0003824 | catalytic activity | No |
| GO:0008150 | biological_process | No |
| GO:0003674 | molecular_function | No |
| GO:0008152 | metabolic process | No |
| GO:0016798 | hydrolase activity, acting on glycosyl bonds | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 39 | 0.45 |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Ophio5|2438 MPWKDQLQRVKDKFDKNQSSSSSQPKNPPATNSAYWQPRFQENVAVSDEWDAKIGNGPDGWGNQELEHYTAEPAN SFYTADGKLVIRAVANNSLPEAEKRYTSARLVSRRTLDRDQGVLTAVIQSPCAEGIWPAFWLLPKEPFSWPTDGE VDIAETWNGDCENRSCLHWGHHHDPQKHRVLGTKIPDMHCRPVRYDFAWQQPDGRPGQGRMLWYLDGKPVMKTDI PEGTRPMRDMTILLNVAMGGNVCAGKKPADGSYDMVVSTLFLASELDNGGWERFDRDWQSDATPGGNTY |
| Coding | >Ophio5|2438 ATGCCGTGGAAGGATCAACTCCAGCGAGTCAAAGACAAGTTCGACAAAAACCAGTCGTCGTCGTCGTCGCAGCCT AAGAATCCACCGGCAACCAACTCGGCCTATTGGCAGCCACGCTTCCAGGAGAACGTGGCCGTCAGCGACGAATGG GATGCAAAGATCGGTAACGGACCTGATGGCTGGGGTAACCAAGAGCTGGAGCACTATACCGCCGAGCCTGCGAAC TCGTTTTATACGGCTGACGGAAAGCTCGTGATCCGTGCCGTGGCGAATAACAGCCTTCCCGAGGCTGAGAAGCGT TACACATCGGCCCGTCTCGTCAGTCGCCGCACGCTGGACCGTGACCAGGGCGTCCTCACTGCCGTTATTCAGAGT CCCTGCGCAGAAGGCATCTGGCCCGCCTTCTGGCTTCTGCCCAAGGAGCCCTTCTCCTGGCCGACCGACGGCGAG GTCGACATTGCCGAGACGTGGAATGGCGACTGCGAGAATAGGTCGTGTCTGCATTGGGGCCATCACCACGATCCC CAGAAGCACCGCGTCCTCGGCACCAAGATCCCCGATATGCACTGCCGTCCCGTCCGCTACGACTTCGCCTGGCAG CAGCCTGACGGCCGACCTGGACAGGGTCGTATGTTATGGTATCTCGACGGCAAGCCCGTCATGAAGACCGACATC CCGGAAGGCACCCGCCCCATGAGGGACATGACTATCCTGCTCAACGTCGCCATGGGCGGCAACGTCTGCGCTGGA AAGAAGCCGGCCGACGGATCCTACGACATGGTCGTGTCCACCCTCTTCCTCGCTAGCGAGCTCGATAACGGTGGT TGGGAGCGCTTCGACCGGGATTGGCAGAGCGACGCGACGCCCGGCGGAAATACATAT |
| Transcript | >Ophio5|2438 ATGCCGTGGAAGGATCAACTCCAGCGAGTCAAAGACAAGTTCGACAAAAACCAGTCGTCGTCGTCGTCGCAGCCT AAGAATCCACCGGCAACCAACTCGGCCTATTGGCAGCCACGCTTCCAGGAGAACGTGGCCGTCAGCGACGAATGG GATGCAAAGATCGGTAACGGACCTGATGGCTGGGGTAACCAAGAGCTGGAGCACTATACCGCCGAGCCTGCGAAC TCGTTTTATACGGCTGACGGAAAGCTCGTGATCCGTGCCGTGGCGAATAACAGCCTTCCCGAGGCTGAGAAGCGT TACACATCGGCCCGTCTCGTCAGTCGCCGCACGCTGGACCGTGACCAGGGCGTCCTCACTGCCGTTATTCAGAGT CCCTGCGCAGAAGGCATCTGGCCCGCCTTCTGGCTTCTGCCCAAGGAGCCCTTCTCCTGGCCGACCGACGGCGAG GTCGACATTGCCGAGACGTGGAATGGCGACTGCGAGAATAGGTCGTGTCTGCATTGGGGCCATCACCACGATCCC CAGAAGCACCGCGTCCTCGGCACCAAGATCCCCGATATGCACTGCCGTCCCGTCCGCTACGACTTCGCCTGGCAG CAGCCTGACGGCCGACCTGGACAGGGTCGTATGTTATGGTATCTCGACGGCAAGCCCGTCATGAAGACCGACATC CCGGAAGGCACCCGCCCCATGAGGGACATGACTATCCTGCTCAACGTCGCCATGGGCGGCAACGTCTGCGCTGGA AAGAAGCCGGCCGACGGATCCTACGACATGGTCGTGTCCACCCTCTTCCTCGCTAGCGAGCTCGATAACGGTGGT TGGGAGCGCTTCGACCGGGATTGGCAGAGCGACGCGACGCCCGGCGGAAATACATATTGA |
| Gene | >Ophio5|2438 ATGCCGTGGAAGGATCAACTCCAGCGAGTCAAAGACAAGTTCGACAAAAACCAGTCGTCGTCGTCGTCGCAGCCT AAGAATCCACCGGCAACCAACTCGGCCTATTGGCAGCCACGCTTCCAGGAGAACGTGGCCGTCAGCGACGAATGG GATGCAAAGATCGGTAACGGACCTGATGGCTGGGGTAACCAAGAGCTGGAGCACTATACCGCCGAGCCTGCGAAC TCGTTTTAGTGCGTTGCACGACTTGACCCCTTCCCCCGGAGACGCTCGCTAACGGACAGCAATCCAGTACGGCTG ACGGAAAGCTCGTGATCCGTGCCGTGGCGAATAACAGCCTTCCCGAGGCTGAGAAGCGTTACACATCGGCCCGTC TCGTCAGTCGCCGCACGCTGGACCGTGACCAGGGCGTCCTCACTGCCGTTATTCAGAGTCCCTGCGCAGAAGGCA TCTGGCCCGCCTTCTGGCTTCTGCCCAAGGAGCCCTTCTCCTGGCCGACCGACGGCGAGGTCGACATTGCCGAGA CGTGGAATGGCGACTGCGAGAATAGGTCGTGTCTGCATTGGGGCCATCACCACGATCCCCAGAAGCACCGCGTCC TCGGCACCAAGATCCCCGATATGCACTGCCGTCCCGTCCGCTACGACTTCGCCTGGCAGCAGCCTGACGGCCGAC CTGGACAGGGTCGTATGTTATGGTATCTCGACGGCAAGCCCGTCATGAAGACCGACATCCCGGAAGGCACCCGCC CCATGAGGGACATGACTATCCTGCTCAACGTCGCCATGGGCGGCAACGTCTGCGCTGGAAAGAAGCCGGCCGACG GATCCTACGACATGGTCGTGTCCACCCTCTTCCTCGCTAGCGAGCTCGATAACGGTGGTTGGGAGCGCTTCGACC GGGATTGGCAGAGCGACGCGACGCCCGGCGGAAATACATATTGA |