Fungal Genomics

at Utrecht University

General Properties

Protein ID	Ophio5\|2433
Gene name
Location	scaffold_201:24401..25734
Strand	+
Gene length (bp)	1333
Transcript length (bp)	1239
Coding sequence length (bp)	1236
Protein length (aa)	412

PFAM Domains

(None)

Swissprot hits

(None)

GO

(None)

SignalP

[Help with interpreting these statistics]

SignalP signal predicted	Location (based on Ymax)	D score (significance: > 0.45)
No	1 - 48	0.45

Transmembrane Domains

Domain #	Start	End	Length
1	389	411	22

Transcription Factor Class

(None)

Expression data

Analysis 1: Expression analysis during behavioral modification. Published in De Bekker et al., 2017.

Expression values

Label	Description	Expression (RPKM)	Confidence interval (low)	Confidence interval (high)
SC16a	Pure fungal culture	75.67	41.48	109.86
CcL	In ants, during behavior modification	28.77	13.71	43.84
CcD	In ants, recently dead	22.49	10.13	34.84

Differential expression

Label1	Label2	Q-value	Significant difference
SC16a	CcL	0.000286	yes
SC16a	CcD	0.000286	yes
CcL	CcD	0.384318	no

Sequences

Type of sequence	Sequence
Locus	Download genbank file of locus The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein	>Ophio5\|2433 MASLRLAPFDVPQPTALRKLPPDPGAKILPQHLAFASLEPIVILAAADRPPLGSGSDVLVLAAQQAACPAGMNSC AAQKAPNKCCHEGTYCTDVPDASVGHVACCPNGARCGGQVGSCPSDATSCPSELGGGCCIAGYVCRGFGCVPRDS PAGPSSSVPTPDAYRPVETSRTQGAEGGGGIAPMPFTSVVVTPTPTPTPTPTPTESSTTWEPWTTSSSSTESSDT TTMASLATSESATSSSPSTSDTTTSAGPPWRPTGPSPTTTTTTTSPDESSTQTGCPTGFYGCLATHGGGCCRTDR NCQTHSCPATTTTTVVASNGATIVVPGARGPQTRCADGWFACADDGCCPSGYQCGSASCVATETGSTSTVGKQPA QTGGAAGMRGRRRLLLLLLIEGCYCYWFLLVMLGLAA
Coding	>Ophio5\|2433 ATGGCGTCGCTCCGCCTTGCGCCCTTTGACGTACCGCAGCCGACAGCTTTGAGGAAGCTGCCTCCCGACCCAGGC GCCAAGATCCTTCCACAACATCTCGCCTTTGCATCTCTGGAGCCCATCGTCATCCTCGCCGCCGCTGACCGGCCG CCTCTCGGCTCCGGCTCGGATGTTCTGGTGCTCGCGGCGCAGCAGGCGGCATGTCCTGCTGGGATGAACAGCTGT GCTGCGCAGAAAGCGCCCAACAAATGCTGTCATGAGGGAACGTACTGCACCGACGTCCCGGACGCCAGCGTCGGT CATGTCGCCTGCTGTCCCAACGGGGCGCGATGCGGCGGTCAGGTCGGTAGCTGTCCGTCTGACGCTACGAGCTGC CCGTCCGAGCTGGGTGGCGGGTGCTGTATCGCCGGATATGTCTGCCGCGGCTTCGGATGTGTTCCTCGTGACTCT CCTGCGGGTCCTTCGTCTTCGGTACCGACGCCTGATGCCTATCGCCCGGTCGAGACGAGCCGGACGCAGGGCGCT GAAGGAGGCGGCGGCATCGCGCCCATGCCCTTTACCAGCGTGGTTGTTACGCCGACGCCGACACCGACACCGACA CCGACTCCCACCGAGAGCTCCACAACCTGGGAACCTTGGACGACTTCCAGCAGCTCGACGGAATCATCAGATACC ACTACCATGGCCAGCCTCGCAACATCCGAAAGTGCCACCAGCTCGAGTCCATCGACGTCTGACACGACCACGAGC GCCGGCCCTCCCTGGCGTCCCACTGGTCCTTCACCGACGACGACGACGACGACGACGTCGCCCGACGAGTCCAGC ACACAGACAGGGTGCCCCACCGGCTTCTACGGTTGCCTAGCCACGCACGGGGGCGGTTGCTGCCGAACAGACCGC AACTGCCAAACACACTCATGCCCGGCGACAACGACGACAACCGTCGTGGCATCCAACGGCGCGACCATTGTGGTG CCGGGCGCGCGGGGTCCCCAGACAAGGTGCGCCGACGGATGGTTCGCCTGTGCCGACGATGGCTGCTGCCCGAGT GGATATCAATGCGGGTCTGCGAGCTGTGTGGCTACTGAGACTGGCAGCACCAGCACCGTGGGGAAGCAGCCGGCG CAGACGGGCGGCGCGGCTGGCATGAGAGGGAGGAGAAGGCTGCTGTTGCTGCTGCTTATAGAGGGCTGCTATTGC TACTGGTTCCTTTTGGTGATGCTGGGATTGGCGGCG
Transcript	>Ophio5\|2433 ATGGCGTCGCTCCGCCTTGCGCCCTTTGACGTACCGCAGCCGACAGCTTTGAGGAAGCTGCCTCCCGACCCAGGC GCCAAGATCCTTCCACAACATCTCGCCTTTGCATCTCTGGAGCCCATCGTCATCCTCGCCGCCGCTGACCGGCCG CCTCTCGGCTCCGGCTCGGATGTTCTGGTGCTCGCGGCGCAGCAGGCGGCATGTCCTGCTGGGATGAACAGCTGT GCTGCGCAGAAAGCGCCCAACAAATGCTGTCATGAGGGAACGTACTGCACCGACGTCCCGGACGCCAGCGTCGGT CATGTCGCCTGCTGTCCCAACGGGGCGCGATGCGGCGGTCAGGTCGGTAGCTGTCCGTCTGACGCTACGAGCTGC CCGTCCGAGCTGGGTGGCGGGTGCTGTATCGCCGGATATGTCTGCCGCGGCTTCGGATGTGTTCCTCGTGACTCT CCTGCGGGTCCTTCGTCTTCGGTACCGACGCCTGATGCCTATCGCCCGGTCGAGACGAGCCGGACGCAGGGCGCT GAAGGAGGCGGCGGCATCGCGCCCATGCCCTTTACCAGCGTGGTTGTTACGCCGACGCCGACACCGACACCGACA CCGACTCCCACCGAGAGCTCCACAACCTGGGAACCTTGGACGACTTCCAGCAGCTCGACGGAATCATCAGATACC ACTACCATGGCCAGCCTCGCAACATCCGAAAGTGCCACCAGCTCGAGTCCATCGACGTCTGACACGACCACGAGC GCCGGCCCTCCCTGGCGTCCCACTGGTCCTTCACCGACGACGACGACGACGACGACGTCGCCCGACGAGTCCAGC ACACAGACAGGGTGCCCCACCGGCTTCTACGGTTGCCTAGCCACGCACGGGGGCGGTTGCTGCCGAACAGACCGC AACTGCCAAACACACTCATGCCCGGCGACAACGACGACAACCGTCGTGGCATCCAACGGCGCGACCATTGTGGTG CCGGGCGCGCGGGGTCCCCAGACAAGGTGCGCCGACGGATGGTTCGCCTGTGCCGACGATGGCTGCTGCCCGAGT GGATATCAATGCGGGTCTGCGAGCTGTGTGGCTACTGAGACTGGCAGCACCAGCACCGTGGGGAAGCAGCCGGCG CAGACGGGCGGCGCGGCTGGCATGAGAGGGAGGAGAAGGCTGCTGTTGCTGCTGCTTATAGAGGGCTGCTATTGC TACTGGTTCCTTTTGGTGATGCTGGGATTGGCGGCGTGA
Gene	>Ophio5\|2433 ATGGCGTCGCTCCGCCTTGCGCCCTTTGACGTACCGCAGCCGACAGCTTTGAGGAAGCTGCCTCCCGACCCAGGC GCCAAGATCCTTCCACAACATCTCGCCTTTGCATCTCTGGAGCCCATCGTCATCCTCGCCGCCGCTGACCGGCCG CCTCTCGGCTCCGGCTCGGATGTTCTGGTGCTCGCGGCGCAGCAGGCGGCATGTCCTGCTGGGATGAACAGCTGT GCTGCGCAGAAAGCGCCCAACAAATGCTGTCATGAGGGAACGTACTGCACCGACGTCCCGGACGCCAGCGTCGGT CATGTCGCCTGCTGTCCCAACGGGGCGCGATGCGGCGGTCAGGTCGGTAGCTGTCCGTCTGACGCTACGAGCTGC CCGTCCGAGCTGGGTGGCGGGTGCTGTATCGCCGGATATGTCTGCCGCGGCTTCGGATGTACGTTGTCGCGCCAG TTATGGGGGGAAGGGAGTGGTGTGATGGATCGTCATGATGACCTCGCCGAGGGTGTGAGGACCGTTTGTTGCCAT AGGTGTTCCTCGTGACTCTCCTGCGGGTCCTTCGTCTTCGGTACCGACGCCTGATGCCTATCGCCCGGTCGAGAC GAGCCGGACGCAGGGCGCTGAAGGAGGCGGCGGCATCGCGCCCATGCCCTTTACCAGCGTGGTTGTTACGCCGAC GCCGACACCGACACCGACACCGACTCCCACCGAGAGCTCCACAACCTGGGAACCTTGGACGACTTCCAGCAGCTC GACGGAATCATCAGATACCACTACCATGGCCAGCCTCGCAACATCCGAAAGTGCCACCAGCTCGAGTCCATCGAC GTCTGACACGACCACGAGCGCCGGCCCTCCCTGGCGTCCCACTGGTCCTTCACCGACGACGACGACGACGACGAC GTCGCCCGACGAGTCCAGCACACAGACAGGGTGCCCCACCGGCTTCTACGGTTGCCTAGCCACGCACGGGGGCGG TTGCTGCCGAACAGACCGCAACTGCCAAACACACTCATGCCCGGCGACAACGACGACAACCGTCGTGGCATCCAA CGGCGCGACCATTGTGGTGCCGGGCGCGCGGGGTCCCCAGACAAGGTGCGCCGACGGATGGTTCGCCTGTGCCGA CGATGGCTGCTGCCCGAGTGGATATCAATGCGGGTCTGCGAGCTGTGTGGCTACTGAGACTGGCAGCACCAGCAC CGTGGGGAAGCAGCCGGCGCAGACGGGCGGCGCGGCTGGCATGAGAGGGAGGAGAAGGCTGCTGTTGCTGCTGCT TATAGAGGGCTGCTATTGCTACTGGTTCCTTTTGGTGATGCTGGGATTGGCGGCGTGA

© 2022 - Robin Ohm - Utrecht University - The Netherlands

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