Fungal Genomics

at Utrecht University

General Properties

Protein IDOphio5|2426
Gene name
Locationscaffold_201:4577..5147
Strand-
Gene length (bp)570
Transcript length (bp)570
Coding sequence length (bp)567
Protein length (aa) 189

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PFAM Domains

(None)

Swissprot hits

(None)

GO

(None)

SignalP

[Help with interpreting these statistics]
SignalP signal predicted Location
(based on Ymax)
D score
(significance: > 0.45)
Yes 1 - 27 0.45

Transmembrane Domains

(None)

Transcription Factor Class

(None)

Expression data

Analysis 1: Expression analysis during behavioral modification. Published in De Bekker et al., 2017.

Expression values

Label Description Expression (RPKM) Confidence interval (low) Confidence interval (high)
SC16a Pure fungal culture 0.95 0.0 2.43
CcL In ants, during behavior modification 0.00 0.0 0.00
CcD In ants, recently dead 0.00 0.0 0.00

Differential expression

Label1 Label2 Q-value Significant difference
SC16a CcL 1.0 no
SC16a CcD 1.0 no
CcL CcD 1.0 no

Sequences

Type of sequenceSequence
Locus Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein >Ophio5|2426
MIAQGLSCLLLSAALSLMLFIGHGDATPVPTWGHPYHIWSPWLSRQTPGWWPPPGPRWPPRMGLPNNFSPPDGKS
PPHGQDKTRKTNKSKPKNRNEGPDISDETPDTGQDGPGVTGKAPETRTDPPQTEEDPSDTGKDSQEPKDNEIESE
GATENSKEAPDPDSITADPKLKRQKKKFDDLVNSDSLES
Coding >Ophio5|2426
ATGATCGCACAAGGCCTGAGTTGCCTTTTGCTCTCGGCAGCACTCTCCTTGATGCTCTTCATCGGCCACGGCGAT
GCGACACCCGTTCCGACATGGGGTCACCCTTATCACATTTGGTCTCCGTGGTTATCAAGACAAACCCCCGGCTGG
TGGCCTCCTCCCGGACCCCGGTGGCCACCTCGCATGGGCCTACCAAACAACTTCTCGCCACCCGATGGGAAATCC
CCGCCACATGGACAAGACAAGACGCGAAAGACCAACAAAAGCAAGCCCAAGAATAGGAACGAAGGGCCAGATATC
AGCGACGAAACACCGGATACCGGCCAAGACGGGCCAGGTGTCACAGGGAAAGCACCAGAGACCAGAACAGACCCG
CCACAGACGGAGGAAGACCCTTCCGACACGGGAAAAGATTCACAAGAGCCCAAAGACAACGAGATAGAGAGTGAG
GGAGCTACGGAAAATAGCAAAGAAGCCCCAGATCCAGACAGCATCACAGCAGACCCTAAACTCAAGAGGCAGAAA
AAGAAATTCGACGACCTTGTGAACAGCGACTCCCTAGAGTCT
Transcript >Ophio5|2426
ATGATCGCACAAGGCCTGAGTTGCCTTTTGCTCTCGGCAGCACTCTCCTTGATGCTCTTCATCGGCCACGGCGAT
GCGACACCCGTTCCGACATGGGGTCACCCTTATCACATTTGGTCTCCGTGGTTATCAAGACAAACCCCCGGCTGG
TGGCCTCCTCCCGGACCCCGGTGGCCACCTCGCATGGGCCTACCAAACAACTTCTCGCCACCCGATGGGAAATCC
CCGCCACATGGACAAGACAAGACGCGAAAGACCAACAAAAGCAAGCCCAAGAATAGGAACGAAGGGCCAGATATC
AGCGACGAAACACCGGATACCGGCCAAGACGGGCCAGGTGTCACAGGGAAAGCACCAGAGACCAGAACAGACCCG
CCACAGACGGAGGAAGACCCTTCCGACACGGGAAAAGATTCACAAGAGCCCAAAGACAACGAGATAGAGAGTGAG
GGAGCTACGGAAAATAGCAAAGAAGCCCCAGATCCAGACAGCATCACAGCAGACCCTAAACTCAAGAGGCAGAAA
AAGAAATTCGACGACCTTGTGAACAGCGACTCCCTAGAGTCTTGA
Gene >Ophio5|2426
ATGATCGCACAAGGCCTGAGTTGCCTTTTGCTCTCGGCAGCACTCTCCTTGATGCTCTTCATCGGCCACGGCGAT
GCGACACCCGTTCCGACATGGGGTCACCCTTATCACATTTGGTCTCCGTGGTTATCAAGACAAACCCCCGGCTGG
TGGCCTCCTCCCGGACCCCGGTGGCCACCTCGCATGGGCCTACCAAACAACTTCTCGCCACCCGATGGGAAATCC
CCGCCACATGGACAAGACAAGACGCGAAAGACCAACAAAAGCAAGCCCAAGAATAGGAACGAAGGGCCAGATATC
AGCGACGAAACACCGGATACCGGCCAAGACGGGCCAGGTGTCACAGGGAAAGCACCAGAGACCAGAACAGACCCG
CCACAGACGGAGGAAGACCCTTCCGACACGGGAAAAGATTCACAAGAGCCCAAAGACAACGAGATAGAGAGTGAG
GGAGCTACGGAAAATAGCAAAGAAGCCCCAGATCCAGACAGCATCACAGCAGACCCTAAACTCAAGAGGCAGAAA
AAGAAATTCGACGACCTTGTGAACAGCGACTCCCTAGAGTCTTGA

© 2022 - Robin Ohm - Utrecht University - The Netherlands

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