© 2023 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Ophio5|2421 |
| Gene name | |
| Location | scaffold_200:27412..28255 |
| Strand | + |
| Gene length (bp) | 843 |
| Transcript length (bp) | 843 |
| Coding sequence length (bp) | 840 |
| Protein length (aa) | 280 |
| Localizations | Signals | Cytoplasm | Nucleus | Extracellular | Cell membrane | Mitochondrion | Plastid | Endoplasmic reticulum | Lysosome vacuole | Golgi apparatus | Peroxisome |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Extracellular | Signal peptide | 0.1 | 0.0545 | 0.9658 | 0.0973 | 0.143 | 0.0378 | 0.1135 | 0.1442 | 0.1094 | 0.004 |
| SignalP signal predicted | Location | Score |
|---|---|---|
| Yes | 1 - 22 | 0.999435 |
Expression values
| Label | Description | Expression (RPKM) | Confidence interval (low) | Confidence interval (high) |
|---|---|---|---|---|
| SC16a | Pure fungal culture | 0.26 | 0.00 | 0.81 |
| CcL | In ants, during behavior modification | 12.43 | 3.14 | 21.71 |
| CcD | In ants, recently dead | 7.15 | 1.56 | 12.74 |
Differential expression
| Label1 | Label2 | Q-value | Significant difference |
|---|---|---|---|
| SC16a | CcL | 0.082160 | no |
| SC16a | CcD | 0.082160 | no |
| CcL | CcD | 0.145081 | no |
| Orthofinder run ID | 4 |
| Orthogroup | 7334 |
| Change Orthofinder run |
| Species | Protein ID |
|---|---|
| Ophiocordyceps camponoti-floridani | Ophcf2|03073 |
| Ophiocordyceps camponoti-rufipedis | Ophun1|4208 |
| Ophiocordyceps kimflemingae | Ophio5|2421 (this protein) |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
Download genbank file of locus (reverse complement)
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Ophio5|2421 MLPAAFLLAAIPAVMGTPPANASDASFPPANSERMRLTAMTKWFTLSAQPFIPGRPSKTVNNSIQVDFIRLVRGM KVTPYWKESTPCHYPLVLEAINQTPLEKQRRPNATSSDAAGKGKKRNEDRPTNNTAVAQRNGSAIATPFYLHPIQ KQIYADINSSSHVALVKTNPPPGVGPQVVELVCDPVYEGVAFKKIIFGAKGPELDNQPGVFFACPSPAPKSLSSE APPIYLQWSTTGPPLGRSCVPLRMIAEKAPNPQDRSKDWSMACDYITVDGECKIH |
| Coding | >Ophio5|2421 ATGTTGCCAGCAGCTTTTCTCCTGGCCGCCATTCCGGCGGTCATGGGCACTCCGCCGGCTAATGCTTCGGATGCG AGCTTTCCGCCGGCTAATTCTGAGCGCATGCGCCTCACTGCCATGACTAAATGGTTCACTCTGTCCGCCCAACCG TTTATTCCGGGACGTCCTTCAAAGACCGTCAACAACTCGATTCAAGTCGACTTCATTCGTCTCGTCCGGGGCATG AAAGTCACTCCCTATTGGAAAGAAAGCACCCCGTGCCATTATCCCCTCGTCCTAGAGGCCATCAACCAGACGCCA CTTGAAAAACAACGTCGCCCAAACGCGACCTCCTCAGACGCGGCGGGCAAGGGGAAAAAACGCAACGAAGACCGC CCGACCAATAACACGGCAGTAGCCCAGAGGAATGGGTCGGCCATTGCAACCCCCTTTTACCTCCATCCGATCCAG AAACAAATCTACGCCGATATAAACTCGTCATCGCACGTTGCTCTGGTGAAGACGAATCCGCCGCCTGGGGTAGGC CCACAAGTCGTGGAGCTCGTATGCGATCCTGTATATGAGGGAGTCGCGTTCAAGAAAATCATCTTTGGAGCCAAG GGTCCGGAATTAGATAACCAGCCTGGGGTCTTCTTCGCCTGTCCGTCGCCTGCGCCGAAGTCTCTGTCGTCTGAG GCTCCCCCGATTTATCTTCAGTGGTCCACTACAGGGCCTCCTCTGGGACGGAGTTGTGTCCCGCTGAGGATGATT GCTGAGAAGGCACCAAATCCCCAGGACCGGTCCAAGGACTGGTCGATGGCATGCGACTACATCACAGTTGATGGA GAGTGTAAGATTCAT |
| Transcript | >Ophio5|2421 ATGTTGCCAGCAGCTTTTCTCCTGGCCGCCATTCCGGCGGTCATGGGCACTCCGCCGGCTAATGCTTCGGATGCG AGCTTTCCGCCGGCTAATTCTGAGCGCATGCGCCTCACTGCCATGACTAAATGGTTCACTCTGTCCGCCCAACCG TTTATTCCGGGACGTCCTTCAAAGACCGTCAACAACTCGATTCAAGTCGACTTCATTCGTCTCGTCCGGGGCATG AAAGTCACTCCCTATTGGAAAGAAAGCACCCCGTGCCATTATCCCCTCGTCCTAGAGGCCATCAACCAGACGCCA CTTGAAAAACAACGTCGCCCAAACGCGACCTCCTCAGACGCGGCGGGCAAGGGGAAAAAACGCAACGAAGACCGC CCGACCAATAACACGGCAGTAGCCCAGAGGAATGGGTCGGCCATTGCAACCCCCTTTTACCTCCATCCGATCCAG AAACAAATCTACGCCGATATAAACTCGTCATCGCACGTTGCTCTGGTGAAGACGAATCCGCCGCCTGGGGTAGGC CCACAAGTCGTGGAGCTCGTATGCGATCCTGTATATGAGGGAGTCGCGTTCAAGAAAATCATCTTTGGAGCCAAG GGTCCGGAATTAGATAACCAGCCTGGGGTCTTCTTCGCCTGTCCGTCGCCTGCGCCGAAGTCTCTGTCGTCTGAG GCTCCCCCGATTTATCTTCAGTGGTCCACTACAGGGCCTCCTCTGGGACGGAGTTGTGTCCCGCTGAGGATGATT GCTGAGAAGGCACCAAATCCCCAGGACCGGTCCAAGGACTGGTCGATGGCATGCGACTACATCACAGTTGATGGA GAGTGTAAGATTCATTAG |
| Gene | >Ophio5|2421 ATGTTGCCAGCAGCTTTTCTCCTGGCCGCCATTCCGGCGGTCATGGGCACTCCGCCGGCTAATGCTTCGGATGCG AGCTTTCCGCCGGCTAATTCTGAGCGCATGCGCCTCACTGCCATGACTAAATGGTTCACTCTGTCCGCCCAACCG TTTATTCCGGGACGTCCTTCAAAGACCGTCAACAACTCGATTCAAGTCGACTTCATTCGTCTCGTCCGGGGCATG AAAGTCACTCCCTATTGGAAAGAAAGCACCCCGTGCCATTATCCCCTCGTCCTAGAGGCCATCAACCAGACGCCA CTTGAAAAACAACGTCGCCCAAACGCGACCTCCTCAGACGCGGCGGGCAAGGGGAAAAAACGCAACGAAGACCGC CCGACCAATAACACGGCAGTAGCCCAGAGGAATGGGTCGGCCATTGCAACCCCCTTTTACCTCCATCCGATCCAG AAACAAATCTACGCCGATATAAACTCGTCATCGCACGTTGCTCTGGTGAAGACGAATCCGCCGCCTGGGGTAGGC CCACAAGTCGTGGAGCTCGTATGCGATCCTGTATATGAGGGAGTCGCGTTCAAGAAAATCATCTTTGGAGCCAAG GGTCCGGAATTAGATAACCAGCCTGGGGTCTTCTTCGCCTGTCCGTCGCCTGCGCCGAAGTCTCTGTCGTCTGAG GCTCCCCCGATTTATCTTCAGTGGTCCACTACAGGGCCTCCTCTGGGACGGAGTTGTGTCCCGCTGAGGATGATT GCTGAGAAGGCACCAAATCCCCAGGACCGGTCCAAGGACTGGTCGATGGCATGCGACTACATCACAGTTGATGGA GAGTGTAAGATTCATTAG |