Fungal Genomics

at Utrecht University

General Properties

Protein ID	Ophio5\|2417
Gene name
Location	scaffold_200:13239..14004
Strand	+
Gene length (bp)	765
Transcript length (bp)	765
Coding sequence length (bp)	762
Protein length (aa)	254

PFAM Domains

PFAM Domain ID	Short name	Long name	E-value	Start	End
PF14040	DNase_NucA_NucB	Deoxyribonuclease NucA/NucB	1.5E-07	30	123

Swissprot hits

(None)

GO

(None)

SignalP

[Help with interpreting these statistics]

SignalP signal predicted	Location (based on Ymax)	D score (significance: > 0.45)
Yes	1 - 24	0.45

Transmembrane Domains

(None)

Transcription Factor Class

(None)

Expression data

Analysis 1: Expression analysis during behavioral modification. Published in De Bekker et al., 2017.

Expression values

Label	Description	Expression (RPKM)	Confidence interval (low)	Confidence interval (high)
SC16a	Pure fungal culture	54.01	25.68	82.34
CcL	In ants, during behavior modification	31.72	13.02	50.42
CcD	In ants, recently dead	21.59	8.08	35.09

Differential expression

Label1	Label2	Q-value	Significant difference
SC16a	CcL	0.054615	no
SC16a	CcD	0.001851	yes
CcL	CcD	0.218450	no

Sequences

Type of sequence	Sequence
Locus	Download genbank file of locus The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein	>Ophio5\|2417 MMLRKALPLALALPITASIAAEAAPPDITFLCQEMPDICTNMCWAVRCAKPTFSQQLTLDYPSDDLRRQRLESSG CARCASNATVSARNDACNAYPFPDTSESVSSNASAVSRCVPREQQTKQDADVAILAKKFRQTGQRSFRINFGNPG AAGVKYCLSEPCENDDREEQEEALQKRALAAPFRVFMTNSGMTVASMDDLGADYSFTRRVGAEEKLSPQAQMWQE DFKGERYAFVTDSVVREMNAAEIRGKTGR
Coding	>Ophio5\|2417 ATGATGCTTCGAAAGGCTTTGCCCTTGGCCCTCGCCCTGCCCATCACGGCCTCGATAGCAGCCGAGGCGGCCCCT CCGGACATCACCTTTCTCTGCCAAGAAATGCCCGACATCTGCACCAACATGTGTTGGGCCGTCCGCTGCGCGAAA CCGACCTTCTCACAACAGTTAACGCTCGACTATCCATCCGACGACCTTCGTCGCCAACGTCTCGAATCGTCCGGC TGCGCTCGTTGCGCCAGCAATGCTACCGTTTCCGCCCGGAATGACGCCTGCAACGCGTATCCGTTTCCCGACACG AGCGAGAGCGTATCTTCCAACGCATCGGCCGTGTCCCGGTGCGTCCCTCGGGAACAGCAGACGAAGCAAGACGCC GACGTTGCCATACTCGCCAAAAAGTTTCGCCAGACCGGCCAGCGAAGCTTCAGGATCAACTTTGGCAACCCCGGA GCGGCGGGCGTTAAATACTGCCTCTCGGAGCCGTGTGAAAACGACGACCGGGAGGAGCAGGAGGAGGCTTTGCAG AAGCGCGCTCTGGCGGCGCCCTTTAGAGTCTTTATGACTAATTCGGGCATGACTGTCGCTTCCATGGATGACCTG GGTGCTGATTACAGCTTCACTCGCCGGGTTGGCGCTGAGGAAAAGCTCTCACCGCAGGCTCAGATGTGGCAGGAG GATTTCAAGGGCGAGCGCTATGCCTTTGTAACGGACTCTGTTGTGAGGGAGATGAATGCAGCCGAAATTCGCGGC AAGACTGGCAGA
Transcript	>Ophio5\|2417 ATGATGCTTCGAAAGGCTTTGCCCTTGGCCCTCGCCCTGCCCATCACGGCCTCGATAGCAGCCGAGGCGGCCCCT CCGGACATCACCTTTCTCTGCCAAGAAATGCCCGACATCTGCACCAACATGTGTTGGGCCGTCCGCTGCGCGAAA CCGACCTTCTCACAACAGTTAACGCTCGACTATCCATCCGACGACCTTCGTCGCCAACGTCTCGAATCGTCCGGC TGCGCTCGTTGCGCCAGCAATGCTACCGTTTCCGCCCGGAATGACGCCTGCAACGCGTATCCGTTTCCCGACACG AGCGAGAGCGTATCTTCCAACGCATCGGCCGTGTCCCGGTGCGTCCCTCGGGAACAGCAGACGAAGCAAGACGCC GACGTTGCCATACTCGCCAAAAAGTTTCGCCAGACCGGCCAGCGAAGCTTCAGGATCAACTTTGGCAACCCCGGA GCGGCGGGCGTTAAATACTGCCTCTCGGAGCCGTGTGAAAACGACGACCGGGAGGAGCAGGAGGAGGCTTTGCAG AAGCGCGCTCTGGCGGCGCCCTTTAGAGTCTTTATGACTAATTCGGGCATGACTGTCGCTTCCATGGATGACCTG GGTGCTGATTACAGCTTCACTCGCCGGGTTGGCGCTGAGGAAAAGCTCTCACCGCAGGCTCAGATGTGGCAGGAG GATTTCAAGGGCGAGCGCTATGCCTTTGTAACGGACTCTGTTGTGAGGGAGATGAATGCAGCCGAAATTCGCGGC AAGACTGGCAGATAG
Gene	>Ophio5\|2417 ATGATGCTTCGAAAGGCTTTGCCCTTGGCCCTCGCCCTGCCCATCACGGCCTCGATAGCAGCCGAGGCGGCCCCT CCGGACATCACCTTTCTCTGCCAAGAAATGCCCGACATCTGCACCAACATGTGTTGGGCCGTCCGCTGCGCGAAA CCGACCTTCTCACAACAGTTAACGCTCGACTATCCATCCGACGACCTTCGTCGCCAACGTCTCGAATCGTCCGGC TGCGCTCGTTGCGCCAGCAATGCTACCGTTTCCGCCCGGAATGACGCCTGCAACGCGTATCCGTTTCCCGACACG AGCGAGAGCGTATCTTCCAACGCATCGGCCGTGTCCCGGTGCGTCCCTCGGGAACAGCAGACGAAGCAAGACGCC GACGTTGCCATACTCGCCAAAAAGTTTCGCCAGACCGGCCAGCGAAGCTTCAGGATCAACTTTGGCAACCCCGGA GCGGCGGGCGTTAAATACTGCCTCTCGGAGCCGTGTGAAAACGACGACCGGGAGGAGCAGGAGGAGGCTTTGCAG AAGCGCGCTCTGGCGGCGCCCTTTAGAGTCTTTATGACTAATTCGGGCATGACTGTCGCTTCCATGGATGACCTG GGTGCTGATTACAGCTTCACTCGCCGGGTTGGCGCTGAGGAAAAGCTCTCACCGCAGGCTCAGATGTGGCAGGAG GATTTCAAGGGCGAGCGCTATGCCTTTGTAACGGACTCTGTTGTGAGGGAGATGAATGCAGCCGAAATTCGCGGC AAGACTGGCAGATAG

© 2022 - Robin Ohm - Utrecht University - The Netherlands

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