Fungal Genomics

at Utrecht University

General Properties

Protein ID	Ophio5\|2411
Gene name
Location	scaffold_20:81401..82807
Strand	-
Gene length (bp)	1406
Transcript length (bp)	1221
Coding sequence length (bp)	1218
Protein length (aa)	406

PFAM Domains

PFAM Domain ID	Short name	Long name	E-value	Start	End
PF00566	RabGAP-TBC	Rab-GTPase-TBC domain	9.1E-19	58	274

Swissprot hits

Swissprot ID	Swissprot Description	Start	End	E-value
sp\|O94661\|GYP10_SCHPO	GTPase-activating protein gyp10 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=gyp10 PE=3 SV=1	26	354	4.0E-39
sp\|Q9D9I4\|TBC20_MOUSE	TBC1 domain family member 20 OS=Mus musculus GN=Tbc1d20 PE=1 SV=1	41	314	5.0E-35
sp\|Q2T9Q1\|TBC20_BOVIN	TBC1 domain family member 20 OS=Bos taurus GN=TBC1D20 PE=2 SV=1	27	314	4.0E-34
sp\|Q96BZ9\|TBC20_HUMAN	TBC1 domain family member 20 OS=Homo sapiens GN=TBC1D20 PE=1 SV=1	41	314	1.0E-33
sp\|P43570\|GYP8_YEAST	GTPase-activating protein GYP8 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=GYP8 PE=1 SV=1	27	273	7.0E-16

GO

(None)

SignalP

[Help with interpreting these statistics]

SignalP signal predicted	Location (based on Ymax)	D score (significance: > 0.45)
No	1 - 63	0.45

Transmembrane Domains

(None)

Transcription Factor Class

(None)

Expression data

Analysis 1: Expression analysis during behavioral modification. Published in De Bekker et al., 2017.

Expression values

Label	Description	Expression (RPKM)	Confidence interval (low)	Confidence interval (high)
SC16a	Pure fungal culture	98.70	53.72	143.69
CcL	In ants, during behavior modification	73.20	39.75	106.65
CcD	In ants, recently dead	66.23	36.14	96.32

Differential expression

Label1	Label2	Q-value	Significant difference
SC16a	CcL	0.205489	no
SC16a	CcD	0.076971	no
CcL	CcD	0.703587	no

Sequences

Type of sequence	Sequence
Locus	Download genbank file of locus The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein	>Ophio5\|2411 MATDSGKEPLEAPSSQHVLSVDALRVQEKTREILDACRWRDVSALASLAESWRGLLDDELRRAAWPILLGLPSPG PEHGVGGRSGPTPADEAPRYDWKTLPCHRDEHQVQLDVNRSFIYYPNDQSEAELAQRKAELSSVIIEVLRRHPYL CYFQGFHDICQVFMLVLGPARPAEVVARLSVLRIRDFMLPCLGPTTTQLRLLPDIIAKADPEMRRHIAFIEPFYA LAGTLTMYAHNIEDYHDIARLFDVFLAREPVFSIYVFAQILMDRRDEILGVDESDMLQVILAKVPTRMNLDDLIS KTVIIFDRYPPHSLPSWRSVSDASVLKTVRGVNALADQTLDQGYVYFRQQVKEMWWSDVIDSAKLTIRRHRRPIG AVGMAVGVAAAAFYMRRNPSALQRILSSLQT
Coding	>Ophio5\|2411 ATGGCCACCGACTCGGGCAAAGAGCCACTCGAGGCTCCGTCCAGCCAGCATGTACTGAGCGTCGACGCCCTTCGT GTCCAGGAAAAGACAAGAGAAATTCTTGACGCCTGCAGATGGAGAGACGTATCAGCTCTCGCATCCCTGGCGGAA TCATGGCGGGGTTTGCTTGACGACGAGTTACGCAGGGCAGCATGGCCAATCCTTCTTGGTCTCCCTTCACCGGGC CCGGAACACGGTGTCGGTGGTAGATCTGGGCCAACCCCGGCTGATGAAGCTCCTCGCTACGACTGGAAGACCTTA CCGTGTCACAGAGACGAGCATCAGGTCCAGCTTGATGTCAACCGCTCCTTCATCTACTATCCAAATGATCAGTCC GAAGCCGAATTGGCACAGCGCAAGGCAGAGTTGTCATCCGTGATAATCGAAGTCTTACGCCGACACCCGTACCTG TGCTATTTTCAGGGTTTTCATGATATCTGCCAGGTGTTCATGTTGGTTTTGGGTCCGGCACGGCCAGCCGAGGTG GTGGCCCGGCTGTCCGTCCTTCGCATACGTGACTTCATGTTACCATGCCTGGGGCCGACGACGACTCAATTGAGG CTGCTGCCCGACATAATTGCAAAGGCAGACCCCGAGATGCGACGGCACATTGCCTTCATAGAGCCCTTTTACGCC TTGGCCGGCACCTTGACCATGTACGCTCACAACATCGAGGATTACCACGACATAGCACGGCTCTTCGACGTCTTC CTCGCCCGTGAACCCGTCTTCAGCATATACGTATTCGCCCAGATTCTCATGGACCGCCGTGACGAGATTCTCGGG GTAGACGAATCCGACATGCTTCAGGTCATTCTGGCAAAGGTGCCCACCAGAATGAACCTCGACGACCTTATCTCC AAAACGGTCATCATCTTCGACCGCTATCCGCCGCACTCGCTGCCGTCATGGAGGAGCGTTTCGGATGCGAGTGTC CTCAAGACGGTAAGGGGTGTCAACGCCCTCGCCGACCAGACACTGGACCAAGGCTACGTATATTTCCGGCAACAG GTCAAGGAGATGTGGTGGTCAGATGTGATTGATAGCGCCAAGTTGACCATCAGGAGACATCGTCGGCCGATTGGG GCCGTCGGGATGGCCGTTGGCGTTGCCGCTGCGGCATTCTACATGCGACGCAACCCGAGTGCGCTGCAGCGCATA CTGTCCTCACTTCAAACG
Transcript	>Ophio5\|2411 ATGGCCACCGACTCGGGCAAAGAGCCACTCGAGGCTCCGTCCAGCCAGCATGTACTGAGCGTCGACGCCCTTCGT GTCCAGGAAAAGACAAGAGAAATTCTTGACGCCTGCAGATGGAGAGACGTATCAGCTCTCGCATCCCTGGCGGAA TCATGGCGGGGTTTGCTTGACGACGAGTTACGCAGGGCAGCATGGCCAATCCTTCTTGGTCTCCCTTCACCGGGC CCGGAACACGGTGTCGGTGGTAGATCTGGGCCAACCCCGGCTGATGAAGCTCCTCGCTACGACTGGAAGACCTTA CCGTGTCACAGAGACGAGCATCAGGTCCAGCTTGATGTCAACCGCTCCTTCATCTACTATCCAAATGATCAGTCC GAAGCCGAATTGGCACAGCGCAAGGCAGAGTTGTCATCCGTGATAATCGAAGTCTTACGCCGACACCCGTACCTG TGCTATTTTCAGGGTTTTCATGATATCTGCCAGGTGTTCATGTTGGTTTTGGGTCCGGCACGGCCAGCCGAGGTG GTGGCCCGGCTGTCCGTCCTTCGCATACGTGACTTCATGTTACCATGCCTGGGGCCGACGACGACTCAATTGAGG CTGCTGCCCGACATAATTGCAAAGGCAGACCCCGAGATGCGACGGCACATTGCCTTCATAGAGCCCTTTTACGCC TTGGCCGGCACCTTGACCATGTACGCTCACAACATCGAGGATTACCACGACATAGCACGGCTCTTCGACGTCTTC CTCGCCCGTGAACCCGTCTTCAGCATATACGTATTCGCCCAGATTCTCATGGACCGCCGTGACGAGATTCTCGGG GTAGACGAATCCGACATGCTTCAGGTCATTCTGGCAAAGGTGCCCACCAGAATGAACCTCGACGACCTTATCTCC AAAACGGTCATCATCTTCGACCGCTATCCGCCGCACTCGCTGCCGTCATGGAGGAGCGTTTCGGATGCGAGTGTC CTCAAGACGGTAAGGGGTGTCAACGCCCTCGCCGACCAGACACTGGACCAAGGCTACGTATATTTCCGGCAACAG GTCAAGGAGATGTGGTGGTCAGATGTGATTGATAGCGCCAAGTTGACCATCAGGAGACATCGTCGGCCGATTGGG GCCGTCGGGATGGCCGTTGGCGTTGCCGCTGCGGCATTCTACATGCGACGCAACCCGAGTGCGCTGCAGCGCATA CTGTCCTCACTTCAAACGTAG
Gene	>Ophio5\|2411 ATGGCCACCGACTCGGGCAAAGAGCCACTCGAGGCTCCGTCCAGCCAGCATGTACTGAGCGTCGACGCCCTTCGT GTCCAGGAAAAGACAAGAGAAATTCTTGACGCCTGCAGATGGAGAGACGTATCAGCTCTCGCATCCCTGGCGGAA TCATGGCGGGGTTTGCTTGACGACGAGTTACGCAGGGCAGCATGTTCGTTCGTTCGTTCCTTAATTCGTCATCGA GTTGCCACGAGCTGCTCTCCTCAAGCACATGTTCGTTCTTCCTTGCGCCGAAGCTTGCTGACGCGAGACTCTCGA CTTAACAGGGCCAATCCTTCTTGGTCTCCCTTCACCGGGCCCGGAACACGGTGTCGGTGGTAGATCTGGGCCAAC CCCGGCTGATGAAGCTCCTCGCTACGACTGGAAGACCTTACCGTGTCACAGAGACGAGCATCAGGTCCAGCTTGA TGTCAACCGCTCCTTCATCTACTATCCAAATGGTATGTCAGCATTCACTGTAAACCAGGGAGCGCAGGTCCCCAC GCTGACGGTGCTTTGCTCACATCCCAGATCAGTCCGAAGCCGAATTGGCACAGCGCAAGGCAGAGTTGTCATCCG TGATAATCGAAGTCTTACGCCGACACCCGTACCTGTGCTATTTTCAGGGTTTTCATGATATCTGCCAGGTGTTCA TGTTGGTTTTGGGTCCGGCACGGCCAGCCGAGGTGGTGGCCCGGCTGTCCGTCCTTCGCATACGTGACTTCATGT TACCATGCCTGGGGCCGACGACGACTCAATTGAGGCTGCTGCCCGACATAATTGCAAAGGCAGACCCCGAGATGC GACGGCACATTGCCTTCATAGAGCCCTTTTACGCCTTGGCCGGCACCTTGACCATGTACGCTCACAACATCGAGG ATTACCACGACATAGCACGGCTCTTCGACGTCTTCCTCGCCCGTGAACCCGTCTTCAGCATATACGTATTCGCCC AGATTCTCATGGACCGCCGTGACGAGATTCTCGGGGTAGACGAATCCGACATGCTTCAGGTCATTCTGGCAAAGG TGCCCACCAGAATGAACCTCGACGACCTTATCTCCAAAACGGTCATCATCTTCGACCGCTATCCGCCGCACTCGC TGCCGTCATGGAGGAGCGTTTCGGATGCGAGTGTCCTCAAGACGGTAAGGGGTGTCAACGCCCTCGCCGACCAGA CACTGGACCAAGGCTACGTATATTTCCGGCAACAGGTCAAGGAGATGTGGTGGTCAGATGTGATTGATAGCGCCA AGTTGACCATCAGGAGACATCGTCGGCCGATTGGGGCCGTCGGGATGGCCGTTGGCGTTGCCGCTGCGGCATTCT ACATGCGACGCAACCCGAGTGCGCTGCAGCGCATACTGTCCTCACTTCAAACGTAG

© 2022 - Robin Ohm - Utrecht University - The Netherlands

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