Fungal Genomics

at Utrecht University

General Properties

Protein IDOphio5|2411
Gene name
Locationscaffold_20:81401..82807
Strand-
Gene length (bp)1406
Transcript length (bp)1221
Coding sequence length (bp)1218
Protein length (aa) 406

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PFAM Domains

PFAM Domain ID Short name Long name E-value Start End
PF00566 RabGAP-TBC Rab-GTPase-TBC domain 9.1E-19 58 274

Swissprot hits

Swissprot ID Swissprot Description Start End E-value
sp|O94661|GYP10_SCHPO GTPase-activating protein gyp10 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=gyp10 PE=3 SV=1 26 354 4.0E-39
sp|Q9D9I4|TBC20_MOUSE TBC1 domain family member 20 OS=Mus musculus GN=Tbc1d20 PE=1 SV=1 41 314 5.0E-35
sp|Q2T9Q1|TBC20_BOVIN TBC1 domain family member 20 OS=Bos taurus GN=TBC1D20 PE=2 SV=1 27 314 4.0E-34
sp|Q96BZ9|TBC20_HUMAN TBC1 domain family member 20 OS=Homo sapiens GN=TBC1D20 PE=1 SV=1 41 314 1.0E-33
sp|P43570|GYP8_YEAST GTPase-activating protein GYP8 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=GYP8 PE=1 SV=1 27 273 7.0E-16

GO

(None)

SignalP

[Help with interpreting these statistics]
SignalP signal predicted Location
(based on Ymax)
D score
(significance: > 0.45)
No 1 - 63 0.45

Transmembrane Domains

(None)

Transcription Factor Class

(None)

Expression data

Analysis 1: Expression analysis during behavioral modification. Published in De Bekker et al., 2017.

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Sequences

Type of sequenceSequence
Locus Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein >Ophio5|2411
MATDSGKEPLEAPSSQHVLSVDALRVQEKTREILDACRWRDVSALASLAESWRGLLDDELRRAAWPILLGLPSPG
PEHGVGGRSGPTPADEAPRYDWKTLPCHRDEHQVQLDVNRSFIYYPNDQSEAELAQRKAELSSVIIEVLRRHPYL
CYFQGFHDICQVFMLVLGPARPAEVVARLSVLRIRDFMLPCLGPTTTQLRLLPDIIAKADPEMRRHIAFIEPFYA
LAGTLTMYAHNIEDYHDIARLFDVFLAREPVFSIYVFAQILMDRRDEILGVDESDMLQVILAKVPTRMNLDDLIS
KTVIIFDRYPPHSLPSWRSVSDASVLKTVRGVNALADQTLDQGYVYFRQQVKEMWWSDVIDSAKLTIRRHRRPIG
AVGMAVGVAAAAFYMRRNPSALQRILSSLQT
Coding >Ophio5|2411
ATGGCCACCGACTCGGGCAAAGAGCCACTCGAGGCTCCGTCCAGCCAGCATGTACTGAGCGTCGACGCCCTTCGT
GTCCAGGAAAAGACAAGAGAAATTCTTGACGCCTGCAGATGGAGAGACGTATCAGCTCTCGCATCCCTGGCGGAA
TCATGGCGGGGTTTGCTTGACGACGAGTTACGCAGGGCAGCATGGCCAATCCTTCTTGGTCTCCCTTCACCGGGC
CCGGAACACGGTGTCGGTGGTAGATCTGGGCCAACCCCGGCTGATGAAGCTCCTCGCTACGACTGGAAGACCTTA
CCGTGTCACAGAGACGAGCATCAGGTCCAGCTTGATGTCAACCGCTCCTTCATCTACTATCCAAATGATCAGTCC
GAAGCCGAATTGGCACAGCGCAAGGCAGAGTTGTCATCCGTGATAATCGAAGTCTTACGCCGACACCCGTACCTG
TGCTATTTTCAGGGTTTTCATGATATCTGCCAGGTGTTCATGTTGGTTTTGGGTCCGGCACGGCCAGCCGAGGTG
GTGGCCCGGCTGTCCGTCCTTCGCATACGTGACTTCATGTTACCATGCCTGGGGCCGACGACGACTCAATTGAGG
CTGCTGCCCGACATAATTGCAAAGGCAGACCCCGAGATGCGACGGCACATTGCCTTCATAGAGCCCTTTTACGCC
TTGGCCGGCACCTTGACCATGTACGCTCACAACATCGAGGATTACCACGACATAGCACGGCTCTTCGACGTCTTC
CTCGCCCGTGAACCCGTCTTCAGCATATACGTATTCGCCCAGATTCTCATGGACCGCCGTGACGAGATTCTCGGG
GTAGACGAATCCGACATGCTTCAGGTCATTCTGGCAAAGGTGCCCACCAGAATGAACCTCGACGACCTTATCTCC
AAAACGGTCATCATCTTCGACCGCTATCCGCCGCACTCGCTGCCGTCATGGAGGAGCGTTTCGGATGCGAGTGTC
CTCAAGACGGTAAGGGGTGTCAACGCCCTCGCCGACCAGACACTGGACCAAGGCTACGTATATTTCCGGCAACAG
GTCAAGGAGATGTGGTGGTCAGATGTGATTGATAGCGCCAAGTTGACCATCAGGAGACATCGTCGGCCGATTGGG
GCCGTCGGGATGGCCGTTGGCGTTGCCGCTGCGGCATTCTACATGCGACGCAACCCGAGTGCGCTGCAGCGCATA
CTGTCCTCACTTCAAACG
Transcript >Ophio5|2411
ATGGCCACCGACTCGGGCAAAGAGCCACTCGAGGCTCCGTCCAGCCAGCATGTACTGAGCGTCGACGCCCTTCGT
GTCCAGGAAAAGACAAGAGAAATTCTTGACGCCTGCAGATGGAGAGACGTATCAGCTCTCGCATCCCTGGCGGAA
TCATGGCGGGGTTTGCTTGACGACGAGTTACGCAGGGCAGCATGGCCAATCCTTCTTGGTCTCCCTTCACCGGGC
CCGGAACACGGTGTCGGTGGTAGATCTGGGCCAACCCCGGCTGATGAAGCTCCTCGCTACGACTGGAAGACCTTA
CCGTGTCACAGAGACGAGCATCAGGTCCAGCTTGATGTCAACCGCTCCTTCATCTACTATCCAAATGATCAGTCC
GAAGCCGAATTGGCACAGCGCAAGGCAGAGTTGTCATCCGTGATAATCGAAGTCTTACGCCGACACCCGTACCTG
TGCTATTTTCAGGGTTTTCATGATATCTGCCAGGTGTTCATGTTGGTTTTGGGTCCGGCACGGCCAGCCGAGGTG
GTGGCCCGGCTGTCCGTCCTTCGCATACGTGACTTCATGTTACCATGCCTGGGGCCGACGACGACTCAATTGAGG
CTGCTGCCCGACATAATTGCAAAGGCAGACCCCGAGATGCGACGGCACATTGCCTTCATAGAGCCCTTTTACGCC
TTGGCCGGCACCTTGACCATGTACGCTCACAACATCGAGGATTACCACGACATAGCACGGCTCTTCGACGTCTTC
CTCGCCCGTGAACCCGTCTTCAGCATATACGTATTCGCCCAGATTCTCATGGACCGCCGTGACGAGATTCTCGGG
GTAGACGAATCCGACATGCTTCAGGTCATTCTGGCAAAGGTGCCCACCAGAATGAACCTCGACGACCTTATCTCC
AAAACGGTCATCATCTTCGACCGCTATCCGCCGCACTCGCTGCCGTCATGGAGGAGCGTTTCGGATGCGAGTGTC
CTCAAGACGGTAAGGGGTGTCAACGCCCTCGCCGACCAGACACTGGACCAAGGCTACGTATATTTCCGGCAACAG
GTCAAGGAGATGTGGTGGTCAGATGTGATTGATAGCGCCAAGTTGACCATCAGGAGACATCGTCGGCCGATTGGG
GCCGTCGGGATGGCCGTTGGCGTTGCCGCTGCGGCATTCTACATGCGACGCAACCCGAGTGCGCTGCAGCGCATA
CTGTCCTCACTTCAAACGTAG
Gene >Ophio5|2411
ATGGCCACCGACTCGGGCAAAGAGCCACTCGAGGCTCCGTCCAGCCAGCATGTACTGAGCGTCGACGCCCTTCGT
GTCCAGGAAAAGACAAGAGAAATTCTTGACGCCTGCAGATGGAGAGACGTATCAGCTCTCGCATCCCTGGCGGAA
TCATGGCGGGGTTTGCTTGACGACGAGTTACGCAGGGCAGCATGTTCGTTCGTTCGTTCCTTAATTCGTCATCGA
GTTGCCACGAGCTGCTCTCCTCAAGCACATGTTCGTTCTTCCTTGCGCCGAAGCTTGCTGACGCGAGACTCTCGA
CTTAACAGGGCCAATCCTTCTTGGTCTCCCTTCACCGGGCCCGGAACACGGTGTCGGTGGTAGATCTGGGCCAAC
CCCGGCTGATGAAGCTCCTCGCTACGACTGGAAGACCTTACCGTGTCACAGAGACGAGCATCAGGTCCAGCTTGA
TGTCAACCGCTCCTTCATCTACTATCCAAATGGTATGTCAGCATTCACTGTAAACCAGGGAGCGCAGGTCCCCAC
GCTGACGGTGCTTTGCTCACATCCCAGATCAGTCCGAAGCCGAATTGGCACAGCGCAAGGCAGAGTTGTCATCCG
TGATAATCGAAGTCTTACGCCGACACCCGTACCTGTGCTATTTTCAGGGTTTTCATGATATCTGCCAGGTGTTCA
TGTTGGTTTTGGGTCCGGCACGGCCAGCCGAGGTGGTGGCCCGGCTGTCCGTCCTTCGCATACGTGACTTCATGT
TACCATGCCTGGGGCCGACGACGACTCAATTGAGGCTGCTGCCCGACATAATTGCAAAGGCAGACCCCGAGATGC
GACGGCACATTGCCTTCATAGAGCCCTTTTACGCCTTGGCCGGCACCTTGACCATGTACGCTCACAACATCGAGG
ATTACCACGACATAGCACGGCTCTTCGACGTCTTCCTCGCCCGTGAACCCGTCTTCAGCATATACGTATTCGCCC
AGATTCTCATGGACCGCCGTGACGAGATTCTCGGGGTAGACGAATCCGACATGCTTCAGGTCATTCTGGCAAAGG
TGCCCACCAGAATGAACCTCGACGACCTTATCTCCAAAACGGTCATCATCTTCGACCGCTATCCGCCGCACTCGC
TGCCGTCATGGAGGAGCGTTTCGGATGCGAGTGTCCTCAAGACGGTAAGGGGTGTCAACGCCCTCGCCGACCAGA
CACTGGACCAAGGCTACGTATATTTCCGGCAACAGGTCAAGGAGATGTGGTGGTCAGATGTGATTGATAGCGCCA
AGTTGACCATCAGGAGACATCGTCGGCCGATTGGGGCCGTCGGGATGGCCGTTGGCGTTGCCGCTGCGGCATTCT
ACATGCGACGCAACCCGAGTGCGCTGCAGCGCATACTGTCCTCACTTCAAACGTAG

© 2022 - Robin Ohm - Utrecht University - The Netherlands

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