Fungal Genomics

at Utrecht University

General Properties

Protein IDOphio5|24
Gene name
Locationscaffold_1:54317..55491
Strand+
Gene length (bp)1174
Transcript length (bp)1056
Coding sequence length (bp)1053
Protein length (aa) 351

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PFAM Domains

PFAM Domain ID Short name Long name E-value Start End
PF01522 Polysacc_deac_1 Polysaccharide deacetylase 1.1E-27 124 244
PF03065 Glyco_hydro_57 Glycosyl hydrolase family 57 1.6E-06 184 280

Swissprot hits

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Swissprot ID Swissprot Description Start End E-value
sp|D4AM78|CDA_ARTBC Chitin deacetylase ARB_04768 OS=Arthroderma benhamiae (strain ATCC MYA-4681 / CBS 112371) GN=ARB_04768 PE=3 SV=1 112 324 8.0E-58
sp|D4B5F9|PGDA_ARTBC Probable peptidoglycan-N-acetylglucosamine deacetylase ARB_03699 OS=Arthroderma benhamiae (strain ATCC MYA-4681 / CBS 112371) GN=ARB_03699 PE=1 SV=2 112 329 5.0E-57
sp|Q8DP63|PGDA_STRR6 Peptidoglycan-N-acetylglucosamine deacetylase OS=Streptococcus pneumoniae (strain ATCC BAA-255 / R6) GN=pgdA PE=1 SV=1 128 315 2.0E-22
sp|P50325|CDA_AMYRO Chitin deacetylase OS=Amylomyces rouxii PE=1 SV=1 118 314 2.0E-18
sp|P54865|XYND_CELFI Bifunctional xylanase/deacetylase OS=Cellulomonas fimi GN=xynD PE=1 SV=1 129 305 5.0E-17
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Swissprot ID Swissprot Description Start End E-value
sp|D4AM78|CDA_ARTBC Chitin deacetylase ARB_04768 OS=Arthroderma benhamiae (strain ATCC MYA-4681 / CBS 112371) GN=ARB_04768 PE=3 SV=1 112 324 8.0E-58
sp|D4B5F9|PGDA_ARTBC Probable peptidoglycan-N-acetylglucosamine deacetylase ARB_03699 OS=Arthroderma benhamiae (strain ATCC MYA-4681 / CBS 112371) GN=ARB_03699 PE=1 SV=2 112 329 5.0E-57
sp|Q8DP63|PGDA_STRR6 Peptidoglycan-N-acetylglucosamine deacetylase OS=Streptococcus pneumoniae (strain ATCC BAA-255 / R6) GN=pgdA PE=1 SV=1 128 315 2.0E-22
sp|P50325|CDA_AMYRO Chitin deacetylase OS=Amylomyces rouxii PE=1 SV=1 118 314 2.0E-18
sp|P54865|XYND_CELFI Bifunctional xylanase/deacetylase OS=Cellulomonas fimi GN=xynD PE=1 SV=1 129 305 5.0E-17
sp|P83513|XY11A_PSEXY Bifunctional xylanase/deacetylase OS=Pseudobutyrivibrio xylanivorans GN=xyn11A PE=1 SV=2 128 315 3.0E-16
sp|P04675|NODB_BRASP Chitooligosaccharide deacetylase OS=Bradyrhizobium sp. (strain ANU 289) GN=nodB PE=3 SV=2 125 286 2.0E-15
sp|P50352|NODB_BRAEL Chitooligosaccharide deacetylase OS=Bradyrhizobium elkanii GN=nodB PE=3 SV=1 125 286 2.0E-15
sp|O34798|PDAC_BACSU Peptidoglycan-N-acetylmuramic acid deacetylase PdaC OS=Bacillus subtilis (strain 168) GN=pdaC PE=1 SV=1 128 291 1.0E-14
sp|Q52845|NODB_RHILO Chitooligosaccharide deacetylase OS=Rhizobium loti (strain MAFF303099) GN=nodB PE=3 SV=2 125 284 3.0E-14
sp|O34928|PDAA_BACSU Peptidoglycan-N-acetylmuramic acid deacetylase PdaA OS=Bacillus subtilis (strain 168) GN=pdaA PE=1 SV=1 129 285 4.0E-13
sp|P50355|NODB_RHISN Chitooligosaccharide deacetylase OS=Rhizobium sp. (strain NGR234) GN=nodB PE=3 SV=2 124 284 6.0E-13
sp|Q04729|YFUM2_GEOSE Uncharacterized 30.6 kDa protein in fumA 3'region OS=Geobacillus stearothermophilus PE=3 SV=1 129 225 1.0E-12
sp|P50354|NODB_RHIGA Chitooligosaccharide deacetylase OS=Rhizobium galegae GN=nodB PE=3 SV=1 124 284 2.0E-11
sp|P04339|NODB_RHILV Chitooligosaccharide deacetylase OS=Rhizobium leguminosarum bv. viciae GN=nodB PE=3 SV=1 129 284 1.0E-10
sp|P24150|NODB_RHILP Chitooligosaccharide deacetylase OS=Rhizobium leguminosarum bv. phaseoli GN=nodB PE=3 SV=1 126 284 1.0E-10
sp|Q06702|CDA1_YEAST Chitin deacetylase 1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=CDA1 PE=1 SV=1 130 317 2.0E-10
sp|P02963|NODB_RHIME Chitooligosaccharide deacetylase OS=Rhizobium meliloti (strain 1021) GN=nodB PE=3 SV=3 125 284 3.0E-10
sp|P50850|YLXY_BACSU Uncharacterized protein YlxY OS=Bacillus subtilis (strain 168) GN=ylxY PE=3 SV=2 137 283 2.0E-09
sp|Q06703|CDA2_YEAST Chitin deacetylase 2 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=CDA2 PE=1 SV=1 130 316 2.0E-09
sp|Q59674|XY11A_CELJA Bifunctional xylanase/xylan deacetylase OS=Cellvibrio japonicus GN=xyn11A PE=1 SV=1 129 303 1.0E-08
sp|P50865|PDAB_BACSU Probable polysaccharide deacetylase PdaB OS=Bacillus subtilis (strain 168) GN=pdaB PE=3 SV=2 143 317 3.0E-08
sp|P0CP76|CDA_CRYNJ Chitin deacetylase OS=Cryptococcus neoformans var. neoformans serotype D (strain JEC21 / ATCC MYA-565) GN=MP 84 PE=2 SV=1 127 290 1.0E-07
sp|P0CP77|CDA_CRYNB Chitin deacetylase OS=Cryptococcus neoformans var. neoformans serotype D (strain B-3501A) GN=MP 84 PE=3 SV=1 127 290 2.0E-07
sp|Q07740|NODB_AZOC5 Chitooligosaccharide deacetylase OS=Azorhizobium caulinodans (strain ATCC 43989 / DSM 5975 / JCM 20966 / NBRC 14845 / NCIMB 13405 / ORS 571) GN=nodB PE=3 SV=2 126 284 4.0E-07
sp|P04676|NODB_RHILT Chitooligosaccharide deacetylase OS=Rhizobium leguminosarum bv. trifolii GN=nodB PE=3 SV=1 125 284 7.0E-07
sp|O07596|YHEN_BACSU Putative polysaccharide deacetylase YheN OS=Bacillus subtilis (strain 168) GN=yheN PE=3 SV=1 129 302 6.0E-06
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GO

GO Term Description Terminal node
GO:0016810 hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds Yes
GO:0005975 carbohydrate metabolic process Yes
GO:0003824 catalytic activity Yes
GO:0016787 hydrolase activity No
GO:0071704 organic substance metabolic process No
GO:0044238 primary metabolic process No
GO:0003674 molecular_function No
GO:0008152 metabolic process No
GO:0008150 biological_process No

SignalP

[Help with interpreting these statistics]
SignalP signal predicted Location
(based on Ymax)
D score
(significance: > 0.45)
Yes 1 - 20 0.45

Transmembrane Domains

(None)

Transcription Factor Class

(None)

Expression data

Analysis 1: Expression analysis during behavioral modification. Published in De Bekker et al., 2017.

Click here for more information

Sequences

Type of sequenceSequence
Locus Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein >Ophio5|24
MVPFFTLSVLLCAALLTQATTNSPATTTNSPASANSPSGSCAGSRTGGSSSGSRSGGGSSGSNSGGGSSRSNSGG
GSSGSNSGGASSGSNSGGASSGSRIGGGSRGSSGQKVQVGKIITTCTVPNSYALSFDDGPFDFTLQALDRLKAAG
KKATFFVNGDNFSKLSERSTEVKRMLAEGHQLGSHTFRHPDLTEISEDEVRSEMTLNDAEIKKIIGKTPTYMRPP
FFSTNDAVLATLADMQYAVINADIDTKDFENTTPETNDQSFETYKAKFNEGGTISLMHDVYNTTVNQLIPNVLNF
LQSTNRTSLTVGECLGDPPENWYRNDTVNGKVVKGATRRSLNRKPCGCGSL
Coding >Ophio5|24
ATGGTTCCGTTCTTTACTTTGAGCGTGCTGCTCTGTGCTGCGCTGCTCACCCAGGCCACGACCAACTCACCGGCC
ACCACGACCAACTCACCGGCCTCGGCCAACTCACCGTCTGGGAGCTGCGCAGGATCCAGAACAGGAGGGAGCTCC
TCGGGATCCAGATCAGGGGGAGGTTCCTCGGGATCCAATTCAGGCGGAGGCTCCTCGCGATCCAATTCAGGCGGA
GGATCTTCCGGATCCAACTCAGGCGGAGCATCTTCCGGATCCAATTCAGGCGGAGCATCTTCCGGATCCAGGATA
GGCGGCGGTTCTCGAGGTTCTTCCGGACAGAAAGTCCAAGTCGGAAAAATCATCACGACCTGCACCGTGCCCAAC
TCCTATGCCCTCAGCTTCGACGACGGACCGTTTGACTTCACCTTGCAAGCCCTGGATAGGCTCAAAGCAGCCGGC
AAGAAGGCTACTTTCTTCGTCAACGGCGACAACTTCAGCAAACTCTCGGAGAGATCAACCGAGGTGAAGCGAATG
CTCGCCGAAGGTCATCAGCTCGGATCTCACACATTTCGGCATCCTGATTTGACCGAGATTAGCGAGGACGAAGTC
AGGTCAGAAATGACCTTGAACGACGCCGAGATCAAGAAGATCATAGGAAAGACGCCGACGTATATGCGCCCGCCA
TTTTTCAGTACAAATGATGCCGTCCTGGCGACGCTCGCTGACATGCAATATGCCGTCATCAACGCCGATATTGAT
ACCAAGGATTTTGAGAATACCACACCTGAAACCAATGATCAGTCGTTCGAGACATATAAAGCGAAGTTTAACGAG
GGAGGAACCATCTCTCTCATGCACGACGTTTACAACACGACTGTGAACCAGTTAATACCTAATGTCCTTAACTTC
CTACAAAGCACCAATAGAACATCGTTGACGGTTGGAGAGTGTCTGGGAGACCCGCCAGAAAACTGGTACAGAAAT
GATACGGTCAACGGCAAGGTTGTGAAGGGGGCTACCCGAAGGTCTTTGAACCGCAAGCCGTGTGGTTGCGGATCG
CTC
Transcript >Ophio5|24
ATGGTTCCGTTCTTTACTTTGAGCGTGCTGCTCTGTGCTGCGCTGCTCACCCAGGCCACGACCAACTCACCGGCC
ACCACGACCAACTCACCGGCCTCGGCCAACTCACCGTCTGGGAGCTGCGCAGGATCCAGAACAGGAGGGAGCTCC
TCGGGATCCAGATCAGGGGGAGGTTCCTCGGGATCCAATTCAGGCGGAGGCTCCTCGCGATCCAATTCAGGCGGA
GGATCTTCCGGATCCAACTCAGGCGGAGCATCTTCCGGATCCAATTCAGGCGGAGCATCTTCCGGATCCAGGATA
GGCGGCGGTTCTCGAGGTTCTTCCGGACAGAAAGTCCAAGTCGGAAAAATCATCACGACCTGCACCGTGCCCAAC
TCCTATGCCCTCAGCTTCGACGACGGACCGTTTGACTTCACCTTGCAAGCCCTGGATAGGCTCAAAGCAGCCGGC
AAGAAGGCTACTTTCTTCGTCAACGGCGACAACTTCAGCAAACTCTCGGAGAGATCAACCGAGGTGAAGCGAATG
CTCGCCGAAGGTCATCAGCTCGGATCTCACACATTTCGGCATCCTGATTTGACCGAGATTAGCGAGGACGAAGTC
AGGTCAGAAATGACCTTGAACGACGCCGAGATCAAGAAGATCATAGGAAAGACGCCGACGTATATGCGCCCGCCA
TTTTTCAGTACAAATGATGCCGTCCTGGCGACGCTCGCTGACATGCAATATGCCGTCATCAACGCCGATATTGAT
ACCAAGGATTTTGAGAATACCACACCTGAAACCAATGATCAGTCGTTCGAGACATATAAAGCGAAGTTTAACGAG
GGAGGAACCATCTCTCTCATGCACGACGTTTACAACACGACTGTGAACCAGTTAATACCTAATGTCCTTAACTTC
CTACAAAGCACCAATAGAACATCGTTGACGGTTGGAGAGTGTCTGGGAGACCCGCCAGAAAACTGGTACAGAAAT
GATACGGTCAACGGCAAGGTTGTGAAGGGGGCTACCCGAAGGTCTTTGAACCGCAAGCCGTGTGGTTGCGGATCG
CTCTGA
Gene >Ophio5|24
ATGGTTCCGTTCTTTACTTTGAGCGTGCTGCTCTGTGCTGCGCTGCTCACCCAGGCCACGACCAACTCACCGGCC
ACCACGACCAACTCACCGGCCTCGGCCAACTCACCGTCTGGGAGCTGCGCAGGATCCAGAACAGGAGGGAGCTCC
TCGGGATCCAGATCAGGGGGAGGTTCCTCGGGATCCAATTCAGGCGGAGGCTCCTCGCGATCCAATTCAGGCGGA
GGATCTTCCGGATCCAACTCAGGCGGAGCATCTTCCGGATCCAATTCAGGCGGAGCATCTTCCGGATCCAGGATA
GGCGGCGGTTCTCGAGGTTCTTCCGGACAGAAAGTCCAAGTCGGAAAAATCATCACGACCTGCACCGTGCCCAAC
TCCTATGCCCTCAGCTTCGACGACGGACCGTTTGACTTCACCTTGCAAGCCCTGGATAGGCTCAAAGCAGCCGGC
AAGAAGGCTACTTTCTTCGTCAACGGCGACAACTTCAGCAAACTCTCGGAGAGATCAACCGAGGTGAAGCGAATG
CTCGCCGAAGGTCATCAGCTCGGATCTCACACGTTCGTCTCCCATCACCTTAGTAGGAGACTTACTGACGAATCT
ACCTAGATTTCGGCATCCTGATTTGACCGAGATTAGCGAGGACGAAGTCAGGTCAGAAATGACCTTGAACGACGC
CGAGATCAAGAAGATCATAGGAAAGACGCCGACGTATATGCGCCCGCCATTTTTCAGTACAAATGATGCCGTCCT
GGCGACGCTCGCTGACATGCAATATGCCGTCATCAACGCCGATATTGATACCAAGGATTTTGAGAATACCACACC
TGAAACCAATGATCAGTCGTTCGAGACATATAAAGCGAAGTTTAACGAGGGAGGAACCATCTCTCTCATGCACGA
CGTTTACAACACGACTGTGAACCAGTTAATACCTAATGTCCTTAACTTCCTACAAAGCACCAATAGAACATGTAA
GCATAAGTTTTCTCGTCCGGAGCAATCTGGTCCTTGTACTGATTCTAGTCCAAAAAAAAAAAAAGCGTTGACGGT
TGGAGAGTGTCTGGGAGACCCGCCAGAAAACTGGTACAGAAATGATACGGTCAACGGCAAGGTTGTGAAGGGGGC
TACCCGAAGGTCTTTGAACCGCAAGCCGTGTGGTTGCGGATCGCTCTGA

© 2022 - Robin Ohm - Utrecht University - The Netherlands

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