© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Ophio5|2376 |
| Gene name | |
| Location | scaffold_2:117352..118945 |
| Strand | - |
| Gene length (bp) | 1593 |
| Transcript length (bp) | 1518 |
| Coding sequence length (bp) | 1515 |
| Protein length (aa) | 505 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF01565 | FAD_binding_4 | FAD binding domain | 4.4E-23 | 61 | 190 |
| PF08031 | BBE | Berberine and berberine like | 1.4E-09 | 455 | 500 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|P30986|RETO_ESCCA | Reticuline oxidase OS=Eschscholzia californica GN=BBE1 PE=1 SV=1 | 61 | 500 | 7.0E-19 |
| sp|Q9FZC6|FOX3_ARATH | Flavin-dependent oxidoreductase FOX3 OS=Arabidopsis thaliana GN=FOX3 PE=3 SV=1 | 62 | 500 | 6.0E-18 |
| sp|P08159|HDNO_ARTOX | 6-hydroxy-D-nicotine oxidase OS=Arthrobacter oxydans PE=1 SV=2 | 39 | 494 | 6.0E-18 |
| sp|Q9FZC8|FOX5_ARATH | Flavin-dependent oxidoreductase FOX5 OS=Arabidopsis thaliana GN=FOX5 PE=3 SV=1 | 63 | 500 | 4.0E-15 |
| sp|P93479|RETO_PAPSO | Reticuline oxidase OS=Papaver somniferum GN=BBE1 PE=2 SV=1 | 27 | 500 | 1.0E-14 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|P30986|RETO_ESCCA | Reticuline oxidase OS=Eschscholzia californica GN=BBE1 PE=1 SV=1 | 61 | 500 | 7.0E-19 |
| sp|Q9FZC6|FOX3_ARATH | Flavin-dependent oxidoreductase FOX3 OS=Arabidopsis thaliana GN=FOX3 PE=3 SV=1 | 62 | 500 | 6.0E-18 |
| sp|P08159|HDNO_ARTOX | 6-hydroxy-D-nicotine oxidase OS=Arthrobacter oxydans PE=1 SV=2 | 39 | 494 | 6.0E-18 |
| sp|Q9FZC8|FOX5_ARATH | Flavin-dependent oxidoreductase FOX5 OS=Arabidopsis thaliana GN=FOX5 PE=3 SV=1 | 63 | 500 | 4.0E-15 |
| sp|P93479|RETO_PAPSO | Reticuline oxidase OS=Papaver somniferum GN=BBE1 PE=2 SV=1 | 27 | 500 | 1.0E-14 |
| sp|A6P6V9|CBDAS_CANSA | Cannabidiolic acid synthase OS=Cannabis sativa GN=CBDAS PE=1 SV=1 | 61 | 500 | 2.0E-14 |
| sp|Q9FZC4|FOX1_ARATH | Flavin-dependent oxidoreductase FOX1 OS=Arabidopsis thaliana GN=FOX1 PE=2 SV=1 | 49 | 500 | 2.0E-13 |
| sp|Q8GTB6|THCAS_CANSA | Tetrahydrocannabinolic acid synthase OS=Cannabis sativa PE=1 SV=1 | 61 | 500 | 4.0E-13 |
| sp|Q9FZC5|FOX2_ARATH | Flavin-dependent oxidoreductase FOX2 OS=Arabidopsis thaliana GN=FOX2 PE=2 SV=1 | 63 | 500 | 6.0E-13 |
| sp|Q33DQ2|THCAI_CANSA | Inactive tetrahydrocannabinolic acid synthase OS=Cannabis sativa PE=3 SV=1 | 61 | 500 | 8.0E-13 |
| sp|A6P6W0|CASL1_CANSA | Cannabidiolic acid synthase-like 1 OS=Cannabis sativa GN=CBDAS2 PE=2 SV=1 | 61 | 500 | 1.0E-12 |
| sp|A6P6W1|CASL2_CANSA | Cannabidiolic acid synthase-like 2 OS=Cannabis sativa GN=CBDAS3 PE=2 SV=1 | 61 | 500 | 2.0E-12 |
| sp|Q9FZC7|FOX4_ARATH | Flavin-dependent oxidoreductase FOX4 OS=Arabidopsis thaliana GN=FOX4 PE=2 SV=1 | 63 | 233 | 3.0E-12 |
| sp|Q9SVG4|RETOL_ARATH | Reticuline oxidase-like protein OS=Arabidopsis thaliana GN=At4g20830 PE=1 SV=2 | 53 | 500 | 8.0E-12 |
| sp|Q796Y5|YGAK_BACSU | Uncharacterized FAD-linked oxidoreductase YgaK OS=Bacillus subtilis (strain 168) GN=ygaK PE=3 SV=4 | 41 | 494 | 1.0E-11 |
| sp|Q6Z955|CKX11_ORYSJ | Cytokinin dehydrogenase 11 OS=Oryza sativa subsp. japonica GN=CKX11 PE=2 SV=1 | 61 | 259 | 8.0E-10 |
| sp|Q54H55|Y8969_DICDI | FAD-linked oxidoreductase DDB_G0289697 OS=Dictyostelium discoideum GN=DDB_G0289697 PE=2 SV=1 | 39 | 496 | 5.0E-09 |
| sp|Q75K78|CKX9_ORYSJ | Cytokinin dehydrogenase 9 OS=Oryza sativa subsp. japonica GN=CKX9 PE=2 SV=1 | 45 | 267 | 1.0E-08 |
| sp|Q9FUJ1|CKX7_ARATH | Cytokinin dehydrogenase 7 OS=Arabidopsis thaliana GN=CKX7 PE=1 SV=1 | 48 | 231 | 2.0E-07 |
| sp|O06997|YVDP_BACSU | Uncharacterized FAD-linked oxidoreductase YvdP OS=Bacillus subtilis (strain 168) GN=yvdP PE=1 SV=1 | 40 | 233 | 3.0E-07 |
| sp|P43485|MCRA_STRLA | Mitomycin radical oxidase OS=Streptomyces lavendulae GN=mcrA PE=1 SV=2 | 61 | 247 | 3.0E-07 |
| sp|D7UQ40|SOL5_ALTSO | Bifunctional solanapyrone synthase OS=Alternaria solani GN=sol5 PE=1 SV=1 | 58 | 222 | 4.0E-07 |
| sp|Q67YU0|CKX5_ARATH | Cytokinin dehydrogenase 5 OS=Arabidopsis thaliana GN=CKX5 PE=2 SV=1 | 44 | 231 | 6.0E-07 |
| sp|Q9FUJ3|CKX2_ARATH | Cytokinin dehydrogenase 2 OS=Arabidopsis thaliana GN=CKX2 PE=1 SV=2 | 45 | 236 | 2.0E-06 |
| sp|A0R607|DPRE1_MYCS2 | FAD-dependent decaprenylphosphoryl-beta-D-ribofuranose 2-oxidase OS=Mycobacterium smegmatis (strain ATCC 700084 / mc(2)155) GN=dprE1 PE=1 SV=2 | 60 | 246 | 2.0E-06 |
| sp|Q6YW51|CKX6_ORYSJ | Cytokinin dehydrogenase 6 OS=Oryza sativa subsp. japonica GN=CKX6 PE=3 SV=1 | 42 | 238 | 3.0E-06 |
| sp|Q8LNV6|CKX3_ORYSJ | Cytokinin dehydrogenase 3 OS=Oryza sativa subsp. japonica GN=CKX3 PE=2 SV=1 | 51 | 236 | 3.0E-06 |
| sp|Q6YW50|CKX7_ORYSJ | Cytokinin dehydrogenase 7 OS=Oryza sativa subsp. japonica GN=CKX7 PE=3 SV=1 | 42 | 237 | 4.0E-06 |
| sp|O22213|CKX1_ARATH | Cytokinin dehydrogenase 1 OS=Arabidopsis thaliana GN=CKX1 PE=1 SV=1 | 48 | 281 | 4.0E-06 |
| sp|Q5Z620|CKX10_ORYSJ | Cytokinin dehydrogenase 10 OS=Oryza sativa subsp. japonica GN=CKX10 PE=3 SV=1 | 41 | 237 | 1.0E-05 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0016491 | oxidoreductase activity | Yes |
| GO:0050660 | flavin adenine dinucleotide binding | Yes |
| GO:0036094 | small molecule binding | No |
| GO:0097159 | organic cyclic compound binding | No |
| GO:0005488 | binding | No |
| GO:1901265 | nucleoside phosphate binding | No |
| GO:0000166 | nucleotide binding | No |
| GO:0003824 | catalytic activity | No |
| GO:0003674 | molecular_function | No |
| GO:0043167 | ion binding | No |
| GO:0043168 | anion binding | No |
| GO:1901363 | heterocyclic compound binding | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| Yes | 1 - 22 | 0.45 |
Expression values
| Label | Description | Expression (RPKM) | Confidence interval (low) | Confidence interval (high) |
|---|---|---|---|---|
| SC16a | Pure fungal culture | 0.05 | 0.00 | 0.24 |
| CcL | In ants, during behavior modification | 1.86 | 0.21 | 3.51 |
| CcD | In ants, recently dead | 1.16 | 0.03 | 2.30 |
Differential expression
| Label1 | Label2 | Q-value | Significant difference |
|---|---|---|---|
| SC16a | CcL | 0.318350 | no |
| SC16a | CcD | 1.000000 | no |
| CcL | CcD | 0.341894 | no |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Ophio5|2376 MLLSLSRGGILGVLLVGRVLATDKACLQECLQSTGVPSFFKDQAEFANLSSPYNVRLPFTPAAVVTAASADHVSE AVKCAVQARSGGNSYASHSLGGQNGSLIIDLASMNQVKVNEDMSAEVGGGVRLGNLDRALFDQGKRAMSHGTCAN VGFGGHSLHGGYGYDSRLWGLSLDHIQSVQVVLANGTISDASPTQNEDLFWAVRGAGESMGVVTKFKIRTQPAPE SLVYWIFNFSDIVKDIPTTVAALEHIQNFALNKTVQDRRSSWGWYLGRQRFKLRGKFHGPLDEFNQRIAPEILRG FPNLAEDSRYVRQVNWLQSQALYHHGSDDISQLSQPHEPGEYSTQENFYAKSLTVAGPLTKDAITAYVTFAATEG AKVKESSIWYSIGNLYGGPDSQIDIYDSSWSSYGNRQSMWVFQNHGTVDLEEPFDTSLPDYLQGLNDATTRYVPP TQFGAYANYIDPGLSARDAHNLYYGDLYPRLLRIKKSIDPNKTFSNPLAIGVGDF |
| Coding | >Ophio5|2376 ATGCTCCTCAGTTTGTCTCGGGGTGGTATTCTGGGAGTCTTGCTGGTTGGGCGGGTTCTAGCCACAGACAAAGCC TGCCTCCAAGAGTGCCTGCAATCGACTGGAGTCCCTTCCTTCTTCAAAGACCAAGCCGAGTTTGCAAATTTGTCT AGCCCCTACAATGTCCGCTTGCCATTCACCCCGGCGGCCGTGGTCACAGCCGCGAGCGCTGATCACGTCTCCGAG GCTGTCAAATGTGCAGTGCAAGCTAGAAGTGGTGGCAACTCGTATGCATCTCACAGCTTGGGTGGCCAAAATGGT AGTCTCATCATCGATTTGGCTTCCATGAACCAGGTCAAGGTCAACGAAGACATGTCTGCCGAGGTTGGTGGCGGC GTGCGTTTAGGAAACCTTGACAGGGCCCTCTTCGACCAGGGAAAGCGTGCCATGAGCCACGGTACTTGCGCCAAC GTTGGCTTTGGCGGTCATAGTCTGCATGGCGGCTACGGCTACGATTCCCGACTGTGGGGGTTGTCCCTGGATCAT ATACAATCGGTCCAAGTAGTCCTTGCTAACGGCACGATCTCAGACGCTTCACCCACCCAGAACGAAGACTTATTC TGGGCAGTCCGAGGAGCTGGCGAGTCCATGGGAGTCGTCACCAAGTTTAAAATACGCACGCAGCCCGCACCGGAA TCCCTCGTCTACTGGATATTCAATTTCAGTGACATAGTCAAGGATATCCCAACCACGGTTGCGGCGCTCGAGCAC ATCCAGAACTTTGCTCTAAACAAAACCGTGCAAGATCGGCGTTCGTCCTGGGGGTGGTATCTGGGTCGGCAAAGG TTCAAGCTTCGGGGGAAGTTCCATGGGCCACTCGACGAATTCAACCAACGAATCGCCCCCGAAATCTTACGCGGC TTCCCAAATCTTGCCGAGGACTCTCGGTATGTACGCCAAGTCAATTGGCTTCAAAGCCAAGCACTCTACCATCAT GGTTCCGACGATATCTCGCAGCTCTCTCAACCACATGAGCCCGGGGAGTACTCAACTCAGGAGAACTTCTACGCA AAGTCCCTTACTGTTGCAGGTCCCTTGACGAAGGATGCTATAACCGCCTACGTTACCTTTGCCGCTACGGAAGGG GCAAAGGTAAAGGAATCTTCCATCTGGTACAGCATTGGCAACCTCTACGGTGGCCCAGATAGCCAGATCGACATT TACGACAGCTCGTGGTCGTCTTATGGGAATCGGCAGTCAATGTGGGTGTTTCAGAATCATGGTACCGTCGACTTA GAGGAACCCTTCGACACTTCCCTGCCCGATTATCTCCAAGGCCTAAACGATGCTACGACGAGATACGTGCCGCCC ACCCAGTTTGGGGCGTATGCGAACTATATCGATCCAGGTTTAAGTGCCAGGGATGCTCACAATCTCTACTACGGC GATCTCTATCCCCGGCTGCTTAGGATAAAGAAAAGTATTGATCCTAACAAAACCTTTTCTAATCCTCTCGCTATT GGAGTCGGTGACTTT |
| Transcript | >Ophio5|2376 ATGCTCCTCAGTTTGTCTCGGGGTGGTATTCTGGGAGTCTTGCTGGTTGGGCGGGTTCTAGCCACAGACAAAGCC TGCCTCCAAGAGTGCCTGCAATCGACTGGAGTCCCTTCCTTCTTCAAAGACCAAGCCGAGTTTGCAAATTTGTCT AGCCCCTACAATGTCCGCTTGCCATTCACCCCGGCGGCCGTGGTCACAGCCGCGAGCGCTGATCACGTCTCCGAG GCTGTCAAATGTGCAGTGCAAGCTAGAAGTGGTGGCAACTCGTATGCATCTCACAGCTTGGGTGGCCAAAATGGT AGTCTCATCATCGATTTGGCTTCCATGAACCAGGTCAAGGTCAACGAAGACATGTCTGCCGAGGTTGGTGGCGGC GTGCGTTTAGGAAACCTTGACAGGGCCCTCTTCGACCAGGGAAAGCGTGCCATGAGCCACGGTACTTGCGCCAAC GTTGGCTTTGGCGGTCATAGTCTGCATGGCGGCTACGGCTACGATTCCCGACTGTGGGGGTTGTCCCTGGATCAT ATACAATCGGTCCAAGTAGTCCTTGCTAACGGCACGATCTCAGACGCTTCACCCACCCAGAACGAAGACTTATTC TGGGCAGTCCGAGGAGCTGGCGAGTCCATGGGAGTCGTCACCAAGTTTAAAATACGCACGCAGCCCGCACCGGAA TCCCTCGTCTACTGGATATTCAATTTCAGTGACATAGTCAAGGATATCCCAACCACGGTTGCGGCGCTCGAGCAC ATCCAGAACTTTGCTCTAAACAAAACCGTGCAAGATCGGCGTTCGTCCTGGGGGTGGTATCTGGGTCGGCAAAGG TTCAAGCTTCGGGGGAAGTTCCATGGGCCACTCGACGAATTCAACCAACGAATCGCCCCCGAAATCTTACGCGGC TTCCCAAATCTTGCCGAGGACTCTCGGTATGTACGCCAAGTCAATTGGCTTCAAAGCCAAGCACTCTACCATCAT GGTTCCGACGATATCTCGCAGCTCTCTCAACCACATGAGCCCGGGGAGTACTCAACTCAGGAGAACTTCTACGCA AAGTCCCTTACTGTTGCAGGTCCCTTGACGAAGGATGCTATAACCGCCTACGTTACCTTTGCCGCTACGGAAGGG GCAAAGGTAAAGGAATCTTCCATCTGGTACAGCATTGGCAACCTCTACGGTGGCCCAGATAGCCAGATCGACATT TACGACAGCTCGTGGTCGTCTTATGGGAATCGGCAGTCAATGTGGGTGTTTCAGAATCATGGTACCGTCGACTTA GAGGAACCCTTCGACACTTCCCTGCCCGATTATCTCCAAGGCCTAAACGATGCTACGACGAGATACGTGCCGCCC ACCCAGTTTGGGGCGTATGCGAACTATATCGATCCAGGTTTAAGTGCCAGGGATGCTCACAATCTCTACTACGGC GATCTCTATCCCCGGCTGCTTAGGATAAAGAAAAGTATTGATCCTAACAAAACCTTTTCTAATCCTCTCGCTATT GGAGTCGGTGACTTTTAG |
| Gene | >Ophio5|2376 ATGCTCCTCAGTTTGTCTCGGGGTGGTATTCTGGGAGTCTTGCTGGTTGGGCGGGTTCTAGCCACAGACAAAGCC TGCCTCCAAGAGTGCCTGCAATCGACTGGAGTCCCTTCCTTCTTCAAAGACCAAGCCGAGTTTGCAAATTTGTCT AGCCCCTACAATGTCCGCTTGCCATTCACCCCGGCGGCCGTGGTCACAGCCGCGAGCGCTGATCACGTCTCCGAG GCTGTCAAATGTGCAGTAAGATGCGGGGGCTTCAAGGTGTATACTGCTTCTCTTCCTTTGACCTGAGCGGTTCTC GACTAATAGTTGTAGGTGCAAGCTAGAAGTGGTGGCAACTCGTATGCATCTCACAGCTTGGGTGGCCAAAATGGT AGTCTCATCATCGATTTGGCTTCCATGAACCAGGTCAAGGTCAACGAAGACATGTCTGCCGAGGTTGGTGGCGGC GTGCGTTTAGGAAACCTTGACAGGGCCCTCTTCGACCAGGGAAAGCGTGCCATGAGCCACGGTACTTGCGCCAAC GTTGGCTTTGGCGGTCATAGTCTGCATGGCGGCTACGGCTACGATTCCCGACTGTGGGGGTTGTCCCTGGATCAT ATACAATCGGTCCAAGTAGTCCTTGCTAACGGCACGATCTCAGACGCTTCACCCACCCAGAACGAAGACTTATTC TGGGCAGTCCGAGGAGCTGGCGAGTCCATGGGAGTCGTCACCAAGTTTAAAATACGCACGCAGCCCGCACCGGAA TCCCTCGTCTACTGGATATTCAATTTCAGTGACATAGTCAAGGATATCCCAACCACGGTTGCGGCGCTCGAGCAC ATCCAGAACTTTGCTCTAAACAAAACCGTGCAAGATCGGCGTTCGTCCTGGGGGTGGTATCTGGGTCGGCAAAGG TTCAAGCTTCGGGGGAAGTTCCATGGGCCACTCGACGAATTCAACCAACGAATCGCCCCCGAAATCTTACGCGGC TTCCCAAATCTTGCCGAGGACTCTCGGTATGTACGCCAAGTCAATTGGCTTCAAAGCCAAGCACTCTACCATCAT GGTTCCGACGATATCTCGCAGCTCTCTCAACCACATGAGCCCGGGGAGTACTCAACTCAGGAGAACTTCTACGCA AAGTCCCTTACTGTTGCAGGTCCCTTGACGAAGGATGCTATAACCGCCTACGTTACCTTTGCCGCTACGGAAGGG GCAAAGGTAAAGGAATCTTCCATCTGGTACAGCATTGGCAACCTCTACGGTGGCCCAGATAGCCAGATCGACATT TACGACAGCTCGTGGTCGTCTTATGGGAATCGGCAGTCAATGTGGGTGTTTCAGAATCATGGTACCGTCGACTTA GAGGAACCCTTCGACACTTCCCTGCCCGATTATCTCCAAGGCCTAAACGATGCTACGACGAGATACGTGCCGCCC ACCCAGTTTGGGGCGTATGCGAACTATATCGATCCAGGTTTAAGTGCCAGGGATGCTCACAATCTCTACTACGGC GATCTCTATCCCCGGCTGCTTAGGATAAAGAAAAGTATTGATCCTAACAAAACCTTTTCTAATCCTCTCGCTATT GGAGTCGGTGACTTTTAG |