© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Ophio5|2326 |
| Gene name | |
| Location | scaffold_199:7431..8445 |
| Strand | + |
| Gene length (bp) | 1014 |
| Transcript length (bp) | 900 |
| Coding sequence length (bp) | 897 |
| Protein length (aa) | 299 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF02265 | S1-P1_nuclease | S1/P1 Nuclease | 1.0E-71 | 19 | 283 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|P24021|NUS1_ASPOR | Nuclease S1 OS=Aspergillus oryzae (strain ATCC 42149 / RIB 40) GN=nucS PE=1 SV=2 | 18 | 285 | 2.0E-89 |
| sp|P24504|NUP3_PENSQ | Nuclease PA3 OS=Penicillium sp. PE=1 SV=1 | 19 | 282 | 1.0E-70 |
| sp|P24289|NUP1_PENCI | Nuclease P1 OS=Penicillium citrinum PE=1 SV=1 | 19 | 282 | 3.0E-70 |
| sp|F4JJL0|ENDO4_ARATH | Endonuclease 4 OS=Arabidopsis thaliana GN=ENDO4 PE=3 SV=1 | 6 | 296 | 3.0E-32 |
| sp|Q8LDW6|ENDO3_ARATH | Endonuclease 3 OS=Arabidopsis thaliana GN=ENDO3 PE=2 SV=1 | 1 | 282 | 5.0E-32 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|P24021|NUS1_ASPOR | Nuclease S1 OS=Aspergillus oryzae (strain ATCC 42149 / RIB 40) GN=nucS PE=1 SV=2 | 18 | 285 | 2.0E-89 |
| sp|P24504|NUP3_PENSQ | Nuclease PA3 OS=Penicillium sp. PE=1 SV=1 | 19 | 282 | 1.0E-70 |
| sp|P24289|NUP1_PENCI | Nuclease P1 OS=Penicillium citrinum PE=1 SV=1 | 19 | 282 | 3.0E-70 |
| sp|F4JJL0|ENDO4_ARATH | Endonuclease 4 OS=Arabidopsis thaliana GN=ENDO4 PE=3 SV=1 | 6 | 296 | 3.0E-32 |
| sp|Q8LDW6|ENDO3_ARATH | Endonuclease 3 OS=Arabidopsis thaliana GN=ENDO3 PE=2 SV=1 | 1 | 282 | 5.0E-32 |
| sp|F4JJL3|ENDO5_ARATH | Endonuclease 5 OS=Arabidopsis thaliana GN=ENDO5 PE=2 SV=1 | 13 | 282 | 7.0E-27 |
| sp|Q9C9G4|ENDO2_ARATH | Endonuclease 2 OS=Arabidopsis thaliana GN=ENDO2 PE=1 SV=1 | 10 | 282 | 1.0E-24 |
| sp|Q9SXA6|ENDO1_ARATH | Endonuclease 1 OS=Arabidopsis thaliana GN=ENDO1 PE=1 SV=1 | 11 | 282 | 6.0E-23 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0006308 | DNA catabolic process | Yes |
| GO:0003676 | nucleic acid binding | Yes |
| GO:0004519 | endonuclease activity | Yes |
| GO:0044238 | primary metabolic process | No |
| GO:0003674 | molecular_function | No |
| GO:0044237 | cellular metabolic process | No |
| GO:0008152 | metabolic process | No |
| GO:0006139 | nucleobase-containing compound metabolic process | No |
| GO:0046483 | heterocycle metabolic process | No |
| GO:0016788 | hydrolase activity, acting on ester bonds | No |
| GO:0090304 | nucleic acid metabolic process | No |
| GO:0004518 | nuclease activity | No |
| GO:1901360 | organic cyclic compound metabolic process | No |
| GO:0044265 | cellular macromolecule catabolic process | No |
| GO:0006259 | DNA metabolic process | No |
| GO:0044270 | cellular nitrogen compound catabolic process | No |
| GO:0034655 | nucleobase-containing compound catabolic process | No |
| GO:0019439 | aromatic compound catabolic process | No |
| GO:0006725 | cellular aromatic compound metabolic process | No |
| GO:0008150 | biological_process | No |
| GO:1901361 | organic cyclic compound catabolic process | No |
| GO:0034641 | cellular nitrogen compound metabolic process | No |
| GO:0046700 | heterocycle catabolic process | No |
| GO:0003824 | catalytic activity | No |
| GO:0006807 | nitrogen compound metabolic process | No |
| GO:1901575 | organic substance catabolic process | No |
| GO:0009057 | macromolecule catabolic process | No |
| GO:0044248 | cellular catabolic process | No |
| GO:0097159 | organic cyclic compound binding | No |
| GO:0044260 | cellular macromolecule metabolic process | No |
| GO:0009056 | catabolic process | No |
| GO:1901363 | heterocyclic compound binding | No |
| GO:0016787 | hydrolase activity | No |
| GO:0009987 | cellular process | No |
| GO:0043170 | macromolecule metabolic process | No |
| GO:0005488 | binding | No |
| GO:0071704 | organic substance metabolic process | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| Yes | 1 - 19 | 0.45 |
| Domain # | Start | End | Length |
|---|---|---|---|
| 1 | 7 | 29 | 22 |
Expression values
| Label | Description | Expression (RPKM) | Confidence interval (low) | Confidence interval (high) |
|---|---|---|---|---|
| SC16a | Pure fungal culture | 67.70 | 35.82 | 99.57 |
| CcL | In ants, during behavior modification | 215.14 | 106.64 | 323.63 |
| CcD | In ants, recently dead | 135.18 | 73.32 | 197.03 |
Differential expression
| Label1 | Label2 | Q-value | Significant difference |
|---|---|---|---|
| SC16a | CcL | 0.000286 | yes |
| SC16a | CcD | 0.001851 | yes |
| CcL | CcD | 0.048121 | yes |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Ophio5|2326 MALRAMLVGLVGVPAAVAWGSLGHMTTAFVASHFVSNATREHFQHLLRNDDDDYLASVASWADSVRYMRWARFTR TFHFIDAHDDPPYSCNVDLDRDCKESGCVITALANYTRQSLDDELPAWRRAQAAKFVIHFVGDLHQPLHNEDVEK GGNGIYVLWDGKEFNLHHVWDTSIAEKWIGAHTGIDEAEKWANQLVLAITDGKFSDERKAWLDHLDFSDPIETAM AWSREANAFVCTHVLPDGVEGVRDRELGGRYFDKAGPVIERQVARAGYRMAAWLDAIADEFRASKDRHQATLEL |
| Coding | >Ophio5|2326 ATGGCTCTCCGCGCTATGCTCGTGGGCCTCGTCGGGGTCCCCGCCGCCGTGGCCTGGGGCAGTCTCGGCCACATG ACGACGGCCTTTGTCGCCAGTCACTTCGTATCCAACGCGACGCGGGAGCATTTCCAGCATCTCCTGCGCAACGAC GACGACGATTACCTCGCCAGCGTCGCCTCATGGGCCGACAGCGTACGATATATGCGATGGGCTCGCTTCACACGC ACCTTTCACTTCATCGATGCCCACGATGACCCTCCTTACTCGTGCAACGTCGATCTCGACCGTGACTGCAAGGAA TCGGGCTGCGTCATCACCGCACTGGCCAACTATACCCGTCAGTCGCTCGATGACGAACTGCCGGCTTGGCGACGC GCTCAGGCTGCCAAATTCGTCATCCACTTTGTCGGCGACTTGCACCAGCCGCTGCACAACGAAGATGTCGAAAAG GGGGGTAACGGCATCTATGTCCTCTGGGACGGCAAGGAATTCAATCTGCATCATGTGTGGGACACATCCATTGCC GAGAAGTGGATCGGAGCCCACACGGGCATTGACGAGGCCGAAAAGTGGGCGAATCAGCTGGTCCTGGCCATCACC GACGGCAAGTTTTCCGACGAGAGAAAGGCCTGGCTCGATCATCTCGATTTTTCCGACCCCATCGAGACGGCCATG GCCTGGTCGAGAGAAGCCAACGCGTTTGTGTGCACGCACGTCCTGCCAGACGGCGTTGAAGGCGTCCGAGACCGG GAACTCGGCGGACGATACTTTGACAAAGCAGGGCCTGTCATCGAGAGGCAGGTGGCACGCGCCGGCTACAGGATG GCAGCCTGGCTGGATGCCATTGCAGATGAGTTTCGGGCGTCCAAGGACCGACACCAGGCGACACTGGAGCTG |
| Transcript | >Ophio5|2326 ATGGCTCTCCGCGCTATGCTCGTGGGCCTCGTCGGGGTCCCCGCCGCCGTGGCCTGGGGCAGTCTCGGCCACATG ACGACGGCCTTTGTCGCCAGTCACTTCGTATCCAACGCGACGCGGGAGCATTTCCAGCATCTCCTGCGCAACGAC GACGACGATTACCTCGCCAGCGTCGCCTCATGGGCCGACAGCGTACGATATATGCGATGGGCTCGCTTCACACGC ACCTTTCACTTCATCGATGCCCACGATGACCCTCCTTACTCGTGCAACGTCGATCTCGACCGTGACTGCAAGGAA TCGGGCTGCGTCATCACCGCACTGGCCAACTATACCCGTCAGTCGCTCGATGACGAACTGCCGGCTTGGCGACGC GCTCAGGCTGCCAAATTCGTCATCCACTTTGTCGGCGACTTGCACCAGCCGCTGCACAACGAAGATGTCGAAAAG GGGGGTAACGGCATCTATGTCCTCTGGGACGGCAAGGAATTCAATCTGCATCATGTGTGGGACACATCCATTGCC GAGAAGTGGATCGGAGCCCACACGGGCATTGACGAGGCCGAAAAGTGGGCGAATCAGCTGGTCCTGGCCATCACC GACGGCAAGTTTTCCGACGAGAGAAAGGCCTGGCTCGATCATCTCGATTTTTCCGACCCCATCGAGACGGCCATG GCCTGGTCGAGAGAAGCCAACGCGTTTGTGTGCACGCACGTCCTGCCAGACGGCGTTGAAGGCGTCCGAGACCGG GAACTCGGCGGACGATACTTTGACAAAGCAGGGCCTGTCATCGAGAGGCAGGTGGCACGCGCCGGCTACAGGATG GCAGCCTGGCTGGATGCCATTGCAGATGAGTTTCGGGCGTCCAAGGACCGACACCAGGCGACACTGGAGCTGTAG |
| Gene | >Ophio5|2326 ATGGCTCTCCGCGCTATGCTCGTGGGCCTCGTCGGGGTCCCCGCCGCCGTGGCCTGGGGCAGTATGTGTCCGCCC TTCAAATCTGGCTTGGGACGGGACAGCCTGCTGATGGGACCCTGTTAGGTCTCGGCCACATGACGACGGCCTTTG TCGCCAGTCACTTCGTATCCAACGCGACGCGGGAGCATTTCCAGCATCTCCTGCGCAACGACGACGACGATTACC TCGCCAGCGTCGCCTCATGGGCCGACAGCGTACGATATATGCGATGGGCTCGCTTCACACGCACCTTTCACTTCA TCGATGCCCACGATGACCCTCCTTACTCGTGCAACGTCGATCTCGACCGTGACTGCAAGGAATCGGGCTGCGTCA TCACCGCACTGGCCAACTATACCCGTCAGTCGCTCGATGACGAACTGCCGGCTTGGCGACGCGCTCAGGCTGCCA AATTCGTCATCCACTTTGTCGGCGACTTGCACCAGCCGCTGCACAACGAAGATGTCGAAAAGGGGGGTAACGGCA TCTATGTCCTCTGGGACGGCAAGGAATTCAATCTGCATCATGTGTGGGACACATCCATTGCCGAGAAGTGGATCG GAGCCCACACGGGCATTGACGAGGCCGAAAAGTGGGCGAATCAGCTGGTCCTGGCCATCACCGACGGCAAGTTTT CCGACGAGAGAAAGGCCTGGCTCGATCATCTCGATTTTTCCGACCCCATCGAGACGGCCATGGCCTGGTCGAGAG AAGCCAACGCGTTTGTGTGCACGCACGGTTAGTCCGGCCCGAATCGACACAAGACACTGTCAGCTCACTTTCCCG TCAGTCCTGCCAGACGGCGTTGAAGGCGTCCGAGACCGGGAACTCGGCGGACGATACTTTGACAAAGCAGGGCCT GTCATCGAGAGGCAGGTGGCACGCGCCGGCTACAGGATGGCAGCCTGGCTGGATGCCATTGCAGATGAGTTTCGG GCGTCCAAGGACCGACACCAGGCGACACTGGAGCTGTAG |