Fungal Genomics

at Utrecht University

General Properties

Protein IDOphio5|2325
Gene name
Locationscaffold_199:5363..6561
Strand-
Gene length (bp)1198
Transcript length (bp)927
Coding sequence length (bp)924
Protein length (aa) 308

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PFAM Domains

PFAM Domain ID Short name Long name E-value Start End
PF04193 PQ-loop PQ loop repeat 7.5E-18 10 67
PF04193 PQ-loop PQ loop repeat 3.8E-19 209 265

Swissprot hits

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Swissprot ID Swissprot Description Start End E-value
sp|P38279|YPQ3_YEAST Probable vacuolar amino acid transporter YPQ3 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=RTC2 PE=1 SV=1 7 297 6.0E-49
sp|Q12010|YPQ1_YEAST Probable vacuolar amino acid transporter YPQ1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=YPQ1 PE=1 SV=1 25 301 5.0E-43
sp|Q10482|STM1_SCHPO Seven transmembrane protein 1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=stm1 PE=1 SV=1 10 296 8.0E-36
sp|Q06328|YPQ2_YEAST Probable vacuolar amino acid transporter YPQ2 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=YPQ2 PE=1 SV=1 2 297 8.0E-24
sp|Q5ZJX0|LAAT1_CHICK Lysosomal amino acid transporter 1 homolog OS=Gallus gallus GN=PQLC2 PE=2 SV=1 11 303 6.0E-19
[Show all]
[Show less]
Swissprot ID Swissprot Description Start End E-value
sp|P38279|YPQ3_YEAST Probable vacuolar amino acid transporter YPQ3 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=RTC2 PE=1 SV=1 7 297 6.0E-49
sp|Q12010|YPQ1_YEAST Probable vacuolar amino acid transporter YPQ1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=YPQ1 PE=1 SV=1 25 301 5.0E-43
sp|Q10482|STM1_SCHPO Seven transmembrane protein 1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=stm1 PE=1 SV=1 10 296 8.0E-36
sp|Q06328|YPQ2_YEAST Probable vacuolar amino acid transporter YPQ2 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=YPQ2 PE=1 SV=1 2 297 8.0E-24
sp|Q5ZJX0|LAAT1_CHICK Lysosomal amino acid transporter 1 homolog OS=Gallus gallus GN=PQLC2 PE=2 SV=1 11 303 6.0E-19
sp|Q95XZ6|LAAT1_CAEEL Lysosomal amino acid transporter 1 OS=Caenorhabditis elegans GN=laat-1 PE=1 SV=2 208 296 9.0E-19
sp|Q6ZP29|LAAT1_HUMAN Lysosomal amino acid transporter 1 homolog OS=Homo sapiens GN=PQLC2 PE=1 SV=1 14 296 4.0E-16
sp|Q95XZ6|LAAT1_CAEEL Lysosomal amino acid transporter 1 OS=Caenorhabditis elegans GN=laat-1 PE=1 SV=2 8 97 9.0E-16
sp|B0BMY1|LAAT1_RAT Lysosomal amino acid transporter 1 homolog OS=Rattus norvegicus GN=Pqlc2 PE=1 SV=1 40 296 7.0E-14
sp|Q8C4N4|LAAT1_MOUSE Lysosomal amino acid transporter 1 homolog OS=Mus musculus GN=Pqlc2 PE=2 SV=1 27 296 2.0E-09
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GO

(None)

SignalP

[Help with interpreting these statistics]
SignalP signal predicted Location
(based on Ymax)		 D score
(significance: > 0.45)
No 1 - 33 0.5

Transmembrane Domains

Domain # Start End Length
1 5 27 22
2 40 62 22
3 72 94 22
4 167 189 22
5 204 226 22
6 239 261 22
7 276 298 22

Transcription Factor Class

(None)

Expression data

Analysis 1: Expression analysis during behavioral modification. Published in De Bekker et al., 2017.

Click here for more information

Sequences

Type of sequenceSequence
Locus Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein >Ophio5|2325
MASSALAEALSGIFGSISLTAWIFLLLPQLYANYKSKSAEGLSLVFLFVWSLGDVANLSGALLTDLAPSAVALAG
YFCILDLTLISQCLYYNAVNARRLRNDESDINGTDAAPEHSPLLAGRQSSSADDQVRSANVRVESPTTTSQKLAA
ADSDAGNGSWARNALSLLGVYLIGLAGWFVSYKAGAWGHPAPNVPDPPEGNHDMGATVGVVLGYVSAIFYLCARI
PQIVKNYREQSCQGLSLMFFMLSLTGNLTYGLSLMAYSQEVDYLVKSLPWLLGSLGTIVEDAAIFVQFRLYAGGS
RTSRTSDP
Coding >Ophio5|2325
ATGGCCTCCTCCGCTCTCGCCGAAGCCTTGTCCGGCATCTTTGGCAGTATCAGTCTGACCGCCTGGATCTTCCTG
CTGCTGCCCCAGCTATATGCCAACTACAAGTCCAAGAGCGCAGAGGGTTTGAGTCTGGTCTTCCTTTTCGTGTGG
TCTCTTGGCGATGTCGCCAACTTGTCAGGCGCCTTACTCACCGATCTGGCGCCCAGCGCCGTCGCCCTTGCCGGT
TACTTTTGCATCCTGGACCTGACTCTGATCAGCCAATGTCTTTACTACAACGCCGTCAACGCCCGTCGCCTCCGG
AACGACGAGTCAGACATCAATGGCACCGATGCCGCCCCGGAGCACTCGCCCCTTTTGGCCGGGCGTCAGAGCTCC
TCGGCCGACGACCAAGTACGCTCCGCTAACGTGAGGGTCGAGTCGCCGACGACGACGAGTCAGAAATTGGCCGCA
GCCGACTCGGACGCCGGGAATGGTTCGTGGGCTCGTAACGCCCTGAGCCTGCTAGGCGTCTATCTGATCGGCCTC
GCTGGCTGGTTCGTCTCGTACAAGGCCGGCGCTTGGGGTCACCCTGCACCCAACGTGCCCGATCCGCCCGAGGGT
AACCATGACATGGGCGCGACCGTGGGCGTCGTCTTGGGCTACGTCAGCGCCATCTTCTATCTGTGCGCTCGCATC
CCGCAGATCGTGAAGAATTATCGGGAACAGTCATGTCAAGGCTTGTCGCTGATGTTCTTCATGCTGTCGCTGACG
GGCAACTTGACGTATGGCCTGAGTCTCATGGCCTATTCCCAGGAGGTCGACTACCTCGTCAAGTCGCTGCCTTGG
CTTTTGGGCTCGTTGGGGACGATAGTAGAGGACGCGGCCATCTTCGTGCAGTTTCGGCTTTACGCCGGCGGGAGC
CGCACCAGCAGGACGTCGGACCCT
Transcript >Ophio5|2325
ATGGCCTCCTCCGCTCTCGCCGAAGCCTTGTCCGGCATCTTTGGCAGTATCAGTCTGACCGCCTGGATCTTCCTG
CTGCTGCCCCAGCTATATGCCAACTACAAGTCCAAGAGCGCAGAGGGTTTGAGTCTGGTCTTCCTTTTCGTGTGG
TCTCTTGGCGATGTCGCCAACTTGTCAGGCGCCTTACTCACCGATCTGGCGCCCAGCGCCGTCGCCCTTGCCGGT
TACTTTTGCATCCTGGACCTGACTCTGATCAGCCAATGTCTTTACTACAACGCCGTCAACGCCCGTCGCCTCCGG
AACGACGAGTCAGACATCAATGGCACCGATGCCGCCCCGGAGCACTCGCCCCTTTTGGCCGGGCGTCAGAGCTCC
TCGGCCGACGACCAAGTACGCTCCGCTAACGTGAGGGTCGAGTCGCCGACGACGACGAGTCAGAAATTGGCCGCA
GCCGACTCGGACGCCGGGAATGGTTCGTGGGCTCGTAACGCCCTGAGCCTGCTAGGCGTCTATCTGATCGGCCTC
GCTGGCTGGTTCGTCTCGTACAAGGCCGGCGCTTGGGGTCACCCTGCACCCAACGTGCCCGATCCGCCCGAGGGT
AACCATGACATGGGCGCGACCGTGGGCGTCGTCTTGGGCTACGTCAGCGCCATCTTCTATCTGTGCGCTCGCATC
CCGCAGATCGTGAAGAATTATCGGGAACAGTCATGTCAAGGCTTGTCGCTGATGTTCTTCATGCTGTCGCTGACG
GGCAACTTGACGTATGGCCTGAGTCTCATGGCCTATTCCCAGGAGGTCGACTACCTCGTCAAGTCGCTGCCTTGG
CTTTTGGGCTCGTTGGGGACGATAGTAGAGGACGCGGCCATCTTCGTGCAGTTTCGGCTTTACGCCGGCGGGAGC
CGCACCAGCAGGACGTCGGACCCTTAA
Gene >Ophio5|2325
ATGGCCTCCTCCGCTCTCGCCGAAGCCTTGTCCGGCATCTTTGGCAGTATCAGTCTGACCGCCTGGATCTTCCTG
CTGGTGTGTCACCGCTGAAAAAGCTTCATTGGTAATAAGGCCTGCTGACTGCGCCTCCCTTCACCCAGCTGCCCC
AGCTATATGCCAACTACAAGTCCAAGAGCGCAGAGGGTTTGAGTCTGGTCTTCCTTTTCGTGTGGTCTCTTGGCG
ATGTCGCCAACTTGTCAGGTTTGCCTTCTCTCCTCCTCACCCTCCCGCGTCATGCGCGCTGGAGACGACTGCTGA
CTCGCTCTCTCGCTCTCTCTCTCTCTCTCTCTCTCAACCAAGGCGCCTTACTCACCGATCTGGCGCCCAGCGCCG
TCGCCCTTGCCGGTTACTTTTGCATCCTGGACCTGACTCTGATCAGCCAATGTCTTTACTACAACGCCGTCAACG
CCCGTCGCCTCCGGAACGACGAGTCAGACATCAATGGCACCGATGCCGCCCCGGAGCACTCGCCCCTTTTGGCCG
GGCGTCAGAGCTCCTCGGCCGACGACCAAGTACGCTCCGCTAACGTGAGGGTCGAGTCGCCGACGACGACGAGTC
AGAAATTGGCCGCAGCCGACTCGGACGCCGGGAATGGTTCGTGGGCTCGTAACGCCCTGAGCCTGCTAGGCGTCT
ATCTGATCGGCCTCGCTGGCTGGTTCGTCTCGTACAAGGCCGGCGCTTGGGGTCACCCTGCACCCAACGTGCCCG
ATCCGCCCGAGGGTAACCATGACATGGGCGCGACCGTGGGCGTCGTCTTGGGCTACGTCAGCGCCATCTTCTATC
TGTGGTGGGTTCCGTGAGGTAACCTTGAGCCTGGGCAGAGGCTGACCATGTGTCGCAGCGCTCGCATCCCGCAGA
TCGTGAAGAATTATCGGGAACAGTCATGTCAAGGTCGGATCTTCTTCGTCCCGATGAAACGGCATGATTATCTGA
CTAGGCCTCAGGCTTGTCGCTGATGTTCTTCATGCTGTCGCTGACGGGCAACTTGACGTATGGCCTGAGTCTCAT
GGCCTATTCCCAGGAGGTCGACTACCTCGTCAAGTCGCTGCCTTGGCTTTTGGGCTCGTTGGGGACGATAGTAGA
GGACGCGGCCATCTTCGTGCAGTTTCGGCTTTACGCCGGCGGGAGCCGCACCAGCAGGACGTCGGACCCTTAA

© 2022 - Robin Ohm - Utrecht University - The Netherlands

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