© 2023 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Ophio5|231 |
| Gene name | |
| Location | scaffold_1043:1506..3473 |
| Strand | + |
| Gene length (bp) | 1967 |
| Transcript length (bp) | 1773 |
| Coding sequence length (bp) | 1770 |
| Protein length (aa) | 590 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF11951 | Fungal_trans_2 | Fungal specific transcription factor domain | 3.1E-39 | 179 | 575 |
| PF00172 | Zn_clus | Fungal Zn(2)-Cys(6) binuclear cluster domain | 5.0E-10 | 26 | 59 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|Q05958|ECM22_YEAST | Sterol regulatory element-binding protein ECM22 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=ECM22 PE=1 SV=1 | 17 | 83 | 3.0E-08 |
| sp|Q12151|UPC2_YEAST | Sterol uptake control protein 2 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=UPC2 PE=1 SV=1 | 17 | 57 | 1.0E-07 |
| sp|Q59QC7|UPC2_CANAL | Sterol uptake control protein 2 OS=Candida albicans (strain SC5314 / ATCC MYA-2876) GN=UPC2 PE=1 SV=1 | 5 | 57 | 1.0E-07 |
| sp|Q9UT46|MOC3_SCHPO | Transcriptional regulatory protein moc3 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=moc3 PE=1 SV=4 | 4 | 55 | 3.0E-06 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0006355 | regulation of transcription, DNA-templated | Yes |
| GO:0008270 | zinc ion binding | Yes |
| GO:0000981 | DNA-binding transcription factor activity, RNA polymerase II-specific | Yes |
| GO:0008150 | biological_process | No |
| GO:0051252 | regulation of RNA metabolic process | No |
| GO:0060255 | regulation of macromolecule metabolic process | No |
| GO:0019222 | regulation of metabolic process | No |
| GO:0050794 | regulation of cellular process | No |
| GO:0140110 | transcription regulator activity | No |
| GO:0031323 | regulation of cellular metabolic process | No |
| GO:0065007 | biological regulation | No |
| GO:0046872 | metal ion binding | No |
| GO:0010468 | regulation of gene expression | No |
| GO:0043167 | ion binding | No |
| GO:0043169 | cation binding | No |
| GO:0003674 | molecular_function | No |
| GO:0019219 | regulation of nucleobase-containing compound metabolic process | No |
| GO:0051171 | regulation of nitrogen compound metabolic process | No |
| GO:0005488 | binding | No |
| GO:0080090 | regulation of primary metabolic process | No |
| GO:0009889 | regulation of biosynthetic process | No |
| GO:0050789 | regulation of biological process | No |
| GO:0003700 | DNA-binding transcription factor activity | No |
| GO:1903506 | regulation of nucleic acid-templated transcription | No |
| GO:2001141 | regulation of RNA biosynthetic process | No |
| GO:0046914 | transition metal ion binding | No |
| GO:0010556 | regulation of macromolecule biosynthetic process | No |
| GO:0031326 | regulation of cellular biosynthetic process | No |
| Localizations | Signals | Cytoplasm | Nucleus | Extracellular | Cell membrane | Mitochondrion | Plastid | Endoplasmic reticulum | Lysosome vacuole | Golgi apparatus | Peroxisome |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Nucleus | Nuclear localization signal | 0.4017 | 0.8088 | 0.0259 | 0.03 | 0.1707 | 0.0098 | 0.0634 | 0.0391 | 0.035 | 0.0133 |
| Transcription Factor Class (based on PFAM domains) |
|---|
| Fungal Specific TF |
Expression values
| Label | Description | Expression (RPKM) | Confidence interval (low) | Confidence interval (high) |
|---|---|---|---|---|
| SC16a | Pure fungal culture | 12.55 | 5.41 | 19.68 |
| CcL | In ants, during behavior modification | 52.54 | 18.54 | 86.55 |
| CcD | In ants, recently dead | 38.93 | 19.43 | 58.44 |
Differential expression
| Label1 | Label2 | Q-value | Significant difference |
|---|---|---|---|
| SC16a | CcL | 0.000286 | yes |
| SC16a | CcD | 0.000286 | yes |
| CcL | CcD | 0.301907 | no |
| Orthofinder run ID | 4 |
| Orthogroup | 1435 |
| Change Orthofinder run |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
Download genbank file of locus (reverse complement)
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Ophio5|231 MVKPEPEAETAPLPPRQRKWHPRVFTGCVNCRRRHVKCDERTPSCTNCTRLSLPCNFDRRFVFKAVRPSSRPTPT ATTAAAAAAAAGPPTATTRRRRRSAPHRVSAGSTSSNYEDEDEGDGEEEEDDEVESDEHAVQVMPPVSGLGIAGP APSSGWVASSSSPAPTLTLPAPDCRDALYYHHFLHTVSSYLIIYDTPANANPYRQLLPQLIGGGAGLLRDAMRSF GAMHLSGLTGVPDRRAHRNTAVRTYASVVTRLRDAVSAPQAQADLELLATSLLLCMLEQMSSADASWKIHLVGAG QIFRTLYSPRTADVAGAGTGSSSLLLLPLRRFLVSTMSYLDVAAACATGGGPLIPGDYWETLGGGWEYNLGAPSL VRAPSAAVDRTMAQLRSSCSRVMSIRTDISRFARLLRSGLDRRQSDMFRGDIAHRIRNWHDSVPDIFLRFDDEPA TTATTTTGDDENLDALTAAACILSYALACTIYLERVASRRVGSAALDPTIQHAVDRILTLVGSFSRGVHRLAMLW ALLTGGIATVDTNQQALLRQWLTEMKSFGFKHVSRVLDTLEFAWRQHRASDYDELEAMISSNLVP |
| Coding | >Ophio5|231 ATGGTCAAGCCCGAGCCCGAGGCCGAGACGGCACCGCTGCCGCCGCGGCAGCGGAAATGGCACCCTCGCGTCTTT ACCGGCTGTGTCAACTGCCGGAGGCGCCATGTCAAGTGCGACGAGCGAACGCCTTCTTGTACCAACTGCACGCGT CTGAGCCTTCCCTGCAACTTCGACCGCCGCTTCGTCTTCAAGGCGGTGCGGCCGAGTAGTCGTCCGACCCCAACG GCAACGACGGCGGCGGCGGCGGCGGCGGCGGCGGGTCCCCCGACGGCGACGACCCGGCGACGGAGGAGGTCGGCC CCACACCGGGTCTCGGCCGGGTCTACGTCGAGCAATTACGAAGACGAAGACGAGGGTGATGGAGAGGAGGAGGAA GACGACGAGGTTGAAAGTGATGAGCACGCCGTTCAGGTCATGCCGCCGGTGTCAGGGTTAGGTATCGCCGGTCCC GCTCCGTCCTCCGGCTGGGTCGCTTCTTCTTCTTCACCGGCGCCGACCTTGACTCTCCCGGCGCCAGACTGCCGC GACGCCCTCTACTACCACCACTTCCTGCACACCGTCTCGTCCTACCTCATCATCTACGACACGCCAGCCAACGCC AACCCTTACCGCCAACTACTTCCACAGCTCATCGGCGGCGGGGCCGGCCTCCTCCGGGACGCCATGCGCTCCTTC GGGGCCATGCATCTCTCGGGTCTGACCGGAGTACCGGACCGACGCGCGCATCGCAACACGGCGGTGCGAACGTAC GCCAGCGTCGTCACCCGATTGCGGGATGCCGTCTCGGCGCCCCAGGCTCAGGCTGACCTGGAGCTGCTGGCCACC AGCCTGCTGCTGTGCATGCTGGAGCAGATGTCGTCTGCTGACGCGTCGTGGAAGATTCATCTGGTCGGAGCCGGT CAGATCTTTCGCACGCTGTATAGCCCGCGTACGGCCGACGTGGCCGGAGCGGGGACGGGATCCTCGTCGCTGTTG CTGCTCCCGCTGCGACGCTTCCTCGTCTCCACCATGTCCTATCTCGACGTTGCCGCCGCCTGTGCCACGGGCGGA GGACCGTTGATTCCGGGCGATTACTGGGAGACGCTGGGGGGCGGGTGGGAGTATAATCTCGGGGCGCCGAGTCTC GTCCGTGCTCCCTCGGCGGCCGTGGACCGCACCATGGCTCAGCTTCGCAGCTCGTGTTCGCGTGTCATGTCGATT CGGACGGATATCAGCCGCTTCGCCAGGCTGTTGCGCTCGGGTCTGGATCGTCGCCAGAGCGACATGTTCCGGGGG GATATTGCTCATCGCATCCGTAACTGGCATGACAGCGTACCGGACATCTTTTTACGATTCGACGACGAGCCGGCG ACGACGGCGACGACGACGACGGGCGACGATGAGAACTTGGACGCTCTCACGGCCGCTGCCTGCATCTTATCGTAC GCCCTCGCCTGCACCATCTACCTCGAGCGCGTCGCCTCCCGCCGCGTCGGCAGCGCCGCCCTGGACCCGACCATC CAGCACGCCGTGGACCGTATCCTGACACTCGTCGGCAGCTTCTCCCGCGGAGTCCATCGTCTGGCCATGCTATGG GCGCTACTGACGGGCGGCATCGCAACCGTCGACACAAACCAACAGGCTCTGCTGCGGCAGTGGCTGACGGAGATG AAAAGCTTCGGCTTCAAGCACGTCTCCCGCGTTCTCGACACGCTCGAGTTCGCATGGCGGCAGCACCGCGCAAGC GACTACGACGAACTCGAGGCCATGATATCGAGCAATCTGGTGCCG |
| Transcript | >Ophio5|231 ATGGTCAAGCCCGAGCCCGAGGCCGAGACGGCACCGCTGCCGCCGCGGCAGCGGAAATGGCACCCTCGCGTCTTT ACCGGCTGTGTCAACTGCCGGAGGCGCCATGTCAAGTGCGACGAGCGAACGCCTTCTTGTACCAACTGCACGCGT CTGAGCCTTCCCTGCAACTTCGACCGCCGCTTCGTCTTCAAGGCGGTGCGGCCGAGTAGTCGTCCGACCCCAACG GCAACGACGGCGGCGGCGGCGGCGGCGGCGGCGGGTCCCCCGACGGCGACGACCCGGCGACGGAGGAGGTCGGCC CCACACCGGGTCTCGGCCGGGTCTACGTCGAGCAATTACGAAGACGAAGACGAGGGTGATGGAGAGGAGGAGGAA GACGACGAGGTTGAAAGTGATGAGCACGCCGTTCAGGTCATGCCGCCGGTGTCAGGGTTAGGTATCGCCGGTCCC GCTCCGTCCTCCGGCTGGGTCGCTTCTTCTTCTTCACCGGCGCCGACCTTGACTCTCCCGGCGCCAGACTGCCGC GACGCCCTCTACTACCACCACTTCCTGCACACCGTCTCGTCCTACCTCATCATCTACGACACGCCAGCCAACGCC AACCCTTACCGCCAACTACTTCCACAGCTCATCGGCGGCGGGGCCGGCCTCCTCCGGGACGCCATGCGCTCCTTC GGGGCCATGCATCTCTCGGGTCTGACCGGAGTACCGGACCGACGCGCGCATCGCAACACGGCGGTGCGAACGTAC GCCAGCGTCGTCACCCGATTGCGGGATGCCGTCTCGGCGCCCCAGGCTCAGGCTGACCTGGAGCTGCTGGCCACC AGCCTGCTGCTGTGCATGCTGGAGCAGATGTCGTCTGCTGACGCGTCGTGGAAGATTCATCTGGTCGGAGCCGGT CAGATCTTTCGCACGCTGTATAGCCCGCGTACGGCCGACGTGGCCGGAGCGGGGACGGGATCCTCGTCGCTGTTG CTGCTCCCGCTGCGACGCTTCCTCGTCTCCACCATGTCCTATCTCGACGTTGCCGCCGCCTGTGCCACGGGCGGA GGACCGTTGATTCCGGGCGATTACTGGGAGACGCTGGGGGGCGGGTGGGAGTATAATCTCGGGGCGCCGAGTCTC GTCCGTGCTCCCTCGGCGGCCGTGGACCGCACCATGGCTCAGCTTCGCAGCTCGTGTTCGCGTGTCATGTCGATT CGGACGGATATCAGCCGCTTCGCCAGGCTGTTGCGCTCGGGTCTGGATCGTCGCCAGAGCGACATGTTCCGGGGG GATATTGCTCATCGCATCCGTAACTGGCATGACAGCGTACCGGACATCTTTTTACGATTCGACGACGAGCCGGCG ACGACGGCGACGACGACGACGGGCGACGATGAGAACTTGGACGCTCTCACGGCCGCTGCCTGCATCTTATCGTAC GCCCTCGCCTGCACCATCTACCTCGAGCGCGTCGCCTCCCGCCGCGTCGGCAGCGCCGCCCTGGACCCGACCATC CAGCACGCCGTGGACCGTATCCTGACACTCGTCGGCAGCTTCTCCCGCGGAGTCCATCGTCTGGCCATGCTATGG GCGCTACTGACGGGCGGCATCGCAACCGTCGACACAAACCAACAGGCTCTGCTGCGGCAGTGGCTGACGGAGATG AAAAGCTTCGGCTTCAAGCACGTCTCCCGCGTTCTCGACACGCTCGAGTTCGCATGGCGGCAGCACCGCGCAAGC GACTACGACGAACTCGAGGCCATGATATCGAGCAATCTGGTGCCGTGA |
| Gene | >Ophio5|231 ATGGTCAAGCCCGAGCCCGAGGCCGAGACGGCACCGCTGCCGCCGCGGCAGCGGAAATGGCACCCTCGCGTCTTT ACCGGCTGTGTCAACTGCCGGAGGCGCCATGTCAAGTGCGACGAGCGAACGCCTTCTTGTACCAACTGCACGCGT CTGAGCCTTCCCTGCAACTTCGACCGCCGCTTCGTCTTCAAGGCGGTGCGGCCGAGTAGTCGTCCGACCCCAACG GCAACGACGGCGGCGGCGGCGGCGGCGGCGGCGGGTCCCCCGACGGCGACGACCCGGCGACGGAGGAGGTCGGCC CCACACCGGGTCTCGGCCGGGTCTACGTCGAGCAATTACGAAGACGAAGACGAGGGTGATGGAGAGGAGGAGGAA GACGACGAGGTTGAAAGTGATGAGCACGCCGTTCAGGTCATGCCGCCGGTGTCAGGGTTAGGTATCGCCGGTCCC GCTCCGTCCTCCGGCTGGGTCGCTTCTTCTTCTTCACCGGCGCCGACCTTGACTCTCCCGGCGCCAGACTGCCGC GACGCCCTCTACTACCACCACTTCCTGCACACCGTCTCGTCCTACCTCATCATCTACGACACGCCAGCCAACGCC AACCCTTACCGCCAACTACTTCCACAGCTCATCGGCGGCGGGGCCGGCCTCCTCCGGGACGCCATGCGCTCCTTC GGGGCCATGCATCTCTCGGGTCTGACCGGAGTACCGGACCGACGCGCGCATCGCAACACGGCGGTGCGAACGTAC GCCAGCGTCGTCACCCGATTGCGGGATGCCGTCTCGGCGCCCCAGGCTCAGGCTGACCTGGAGCTGCTGGCCACC AGCCTGCTGCTGTGCATGCTGGAGCAGATGTCGTCTGCTGACGCGTCGTGGAAGATTCATCTGGTCGGAGCCGGT CAGATCTTTCGCACGCTGTATAGCCCGCGTACGGCCGACGTGGCCGGAGCGGGGACGGGATCCTCGTCGCTGTTG CTGCTCCCGCTGCGACGCTTCCTCGTCTCCACCATGTCCTATCTCGACGTTGCCGCCGCCTGTGCCACGGGCGGA GGACCGTTGATTCCGGGCGATTACTGGGAGACGCTGGGGGGCGGGTGGGAGTATAATCTCGGGGCGCCGAGTCTC GTCCGTGCTCCCTCGGCGGCCGTGGACCGCACCATGGCTCAGCTTCGCAGCTCGTGTTCGCGTGTCATGTCGATT CGGACGGATATCAGCCGCTTCGCCAGGCTGTTGCGCTCGGGTCTGGATCGTCGCCAGAGCGACATGTTCCGGGGG GATATTGCTCATCGCATCCGTAACTGGCATGACAGCGTACCGGACATCTTTTTACGATTCGACGACGAGCCGGCG ACGACGGCGACGACGACGACGGGCGACGATGAGAACTTGGACGCTCTCACGGCCGCTGCCTGCATCTTATCGTAC GCCCTCGCCTGCACCATCTACCTCGAGCGCGTCGCCTCCCGCCGCGTCGGCAGCGCCGCCCTGGACCCGACCATC CAGCACGCCGTGGACCGTATCCTGACACTCGTCGGCAGCTTCTCCCGCGGAGTCCATCGTCTGGCCATGCTATGG GCGCTACTGACGGGCGGCATCGCAACCGTCGACACAAACCAACAGGCTCTGCTGCGGCAGTGGCTGACGGAGATG AAAAGCTTCGGCTTCAAGGTACTTTTTTTATTTTTATTTTTTCCCCTCCCTTTCTTTCCGTTTTATCCCTCTCCT TCCCTTTGCCAAGATAGAGGGAGAAAAAGACAGAGCGTGTGCGTGTGTGTGTGTGTGTGAGAGAGAGAGAGAGAG AGAGAGAAAGACAGAGAGAGAGAGAGAGGTGTTGATTGATTAATTGATTGCCCCCTGTCCAGCACGTCTCCCGCG TTCTCGACACGCTCGAGTTCGCATGGCGGCAGCACCGCGCAAGCGACTACGACGAACTCGAGGCCATGATATCGA GCAATCTGGTGCCGTGA |