© 2022 - Robin Ohm - Utrecht University - The Netherlands
Built with Python Django and Wagtail
| Protein ID | Ophio5|230 |
| Gene name | |
| Location | scaffold_1042:2318..3484 |
| Strand | - |
| Gene length (bp) | 1166 |
| Transcript length (bp) | 780 |
| Coding sequence length (bp) | 777 |
| Protein length (aa) | 259 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF02517 | Rce1-like | Type II CAAX prenyl endopeptidase Rce1-like | 4.6E-13 | 156 | 257 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|O94448|RCE1_SCHPO | Probable CAAX prenyl protease 2 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPAC1687.02 PE=3 SV=1 | 17 | 256 | 2.0E-31 |
| sp|Q9U1H8|FACE2_DROME | CAAX prenyl protease 2 OS=Drosophila melanogaster GN=Sras PE=2 SV=3 | 42 | 256 | 1.0E-20 |
| sp|P57791|FACE2_MOUSE | CAAX prenyl protease 2 OS=Mus musculus GN=Rce1 PE=2 SV=1 | 47 | 257 | 6.0E-20 |
| sp|Q9Y256|FACE2_HUMAN | CAAX prenyl protease 2 OS=Homo sapiens GN=RCE1 PE=1 SV=1 | 47 | 257 | 3.0E-19 |
| sp|Q8GW19|FACE2_ARATH | CAAX prenyl protease 2 OS=Arabidopsis thaliana GN=FACE2 PE=2 SV=2 | 153 | 256 | 5.0E-19 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|O94448|RCE1_SCHPO | Probable CAAX prenyl protease 2 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPAC1687.02 PE=3 SV=1 | 17 | 256 | 2.0E-31 |
| sp|Q9U1H8|FACE2_DROME | CAAX prenyl protease 2 OS=Drosophila melanogaster GN=Sras PE=2 SV=3 | 42 | 256 | 1.0E-20 |
| sp|P57791|FACE2_MOUSE | CAAX prenyl protease 2 OS=Mus musculus GN=Rce1 PE=2 SV=1 | 47 | 257 | 6.0E-20 |
| sp|Q9Y256|FACE2_HUMAN | CAAX prenyl protease 2 OS=Homo sapiens GN=RCE1 PE=1 SV=1 | 47 | 257 | 3.0E-19 |
| sp|Q8GW19|FACE2_ARATH | CAAX prenyl protease 2 OS=Arabidopsis thaliana GN=FACE2 PE=2 SV=2 | 153 | 256 | 5.0E-19 |
| sp|Q03530|RCE1_YEAST | CAAX prenyl protease 2 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=RCE1 PE=1 SV=1 | 21 | 256 | 1.0E-11 |
| sp|G5EEP3|FACE2_CAEEL | CAAX prenyl protease 2 homolog OS=Caenorhabditis elegans GN=fce-2 PE=2 SV=1 | 46 | 256 | 4.0E-09 |
| sp|A6H7A0|FACE2_BOVIN | CAAX prenyl protease 2 OS=Bos taurus GN=RCE1 PE=2 SV=1 | 47 | 208 | 2.0E-08 |
| sp|B0BMW8|FACE2_RAT | CAAX prenyl protease 2 OS=Rattus norvegicus GN=Rce1 PE=2 SV=1 | 47 | 208 | 6.0E-08 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0071586 | CAAX-box protein processing | Yes |
| GO:0004222 | metalloendopeptidase activity | Yes |
| GO:0016020 | membrane | Yes |
| GO:0043170 | macromolecule metabolic process | No |
| GO:0004175 | endopeptidase activity | No |
| GO:0008150 | biological_process | No |
| GO:1901564 | organonitrogen compound metabolic process | No |
| GO:0044238 | primary metabolic process | No |
| GO:0006508 | proteolysis | No |
| GO:0008152 | metabolic process | No |
| GO:0003674 | molecular_function | No |
| GO:0008233 | peptidase activity | No |
| GO:0071704 | organic substance metabolic process | No |
| GO:0140096 | catalytic activity, acting on a protein | No |
| GO:0110165 | cellular anatomical entity | No |
| GO:0016787 | hydrolase activity | No |
| GO:0008237 | metallopeptidase activity | No |
| GO:0019538 | protein metabolic process | No |
| GO:0005575 | cellular_component | No |
| GO:0016485 | protein processing | No |
| GO:0051604 | protein maturation | No |
| GO:0006807 | nitrogen compound metabolic process | No |
| GO:0003824 | catalytic activity | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 19 | 0.5 |
| Domain # | Start | End | Length |
|---|---|---|---|
| 1 | 15 | 37 | 22 |
| 2 | 57 | 79 | 22 |
| 3 | 117 | 139 | 22 |
| 4 | 234 | 256 | 22 |
Expression values
| Label | Description | Expression (RPKM) | Confidence interval (low) | Confidence interval (high) |
|---|---|---|---|---|
| SC16a | Pure fungal culture | 132.00 | 72.95 | 191.06 |
| CcL | In ants, during behavior modification | 107.12 | 58.05 | 156.19 |
| CcD | In ants, recently dead | 83.04 | 44.04 | 122.04 |
Differential expression
| Label1 | Label2 | Q-value | Significant difference |
|---|---|---|---|
| SC16a | CcL | 0.385229 | no |
| SC16a | CcD | 0.034007 | yes |
| CcL | CcD | 0.288881 | no |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Ophio5|230 MSLAYFYSWHTGLSKAQAYGLLLGYCAIYVLPLHSLLAAKLSPSRSRDDPKVIRARVRAVSFSTTACSLITFFIL RQTIPVSDSRPGSASGLPSLGSQSVLHLMGCWPPGLLETAKASLLTVFLFAGPIFECLFLDGVWKQWLRLAPLQR LWNDWPTWRNTVVGPVTEEFLFRSAAVPLLLLADADLKSIIFRSPLVFGLAHVHHFYEFRISQPYTPVSAAIARS AFQFSYTSIFGIYATFIFLRTGSLLAVICVHTTR |
| Coding | >Ophio5|230 ATGTCTTTGGCATATTTCTACTCTTGGCACACCGGCCTGAGCAAGGCACAAGCGTACGGCCTACTGTTGGGCTAT TGCGCCATCTACGTCTTACCACTACACAGTCTATTGGCTGCCAAGCTCTCACCATCACGATCCAGAGATGACCCC AAAGTAATTCGGGCTAGAGTGCGTGCAGTGTCTTTCTCAACGACGGCGTGCTCTCTTATTACTTTCTTTATTCTC CGGCAGACCATCCCGGTCTCCGACTCTCGGCCGGGTTCTGCTTCGGGGCTTCCAAGTCTCGGCTCACAGTCTGTC TTGCATCTCATGGGATGCTGGCCGCCGGGCCTACTCGAGACCGCCAAAGCCTCACTCCTTACTGTTTTTCTCTTC GCTGGCCCTATATTCGAGTGCTTATTTTTGGATGGGGTATGGAAGCAGTGGCTGCGGCTCGCACCCCTGCAGCGT CTTTGGAACGACTGGCCAACTTGGCGAAATACTGTTGTTGGCCCGGTCACTGAGGAGTTTCTCTTCCGCTCCGCT GCTGTACCTTTACTACTACTCGCAGATGCTGACTTGAAAAGCATCATTTTTCGGTCCCCCTTGGTATTTGGCCTT GCCCATGTCCATCATTTCTACGAGTTTCGCATCAGTCAACCCTACACACCTGTTTCTGCCGCCATAGCCCGCTCT GCCTTCCAGTTTTCTTACACAAGCATTTTTGGCATCTACGCTACCTTCATTTTTTTGCGTACAGGGTCTCTCCTG GCTGTCATCTGCGTACATACGACCCGA |
| Transcript | >Ophio5|230 ATGTCTTTGGCATATTTCTACTCTTGGCACACCGGCCTGAGCAAGGCACAAGCGTACGGCCTACTGTTGGGCTAT TGCGCCATCTACGTCTTACCACTACACAGTCTATTGGCTGCCAAGCTCTCACCATCACGATCCAGAGATGACCCC AAAGTAATTCGGGCTAGAGTGCGTGCAGTGTCTTTCTCAACGACGGCGTGCTCTCTTATTACTTTCTTTATTCTC CGGCAGACCATCCCGGTCTCCGACTCTCGGCCGGGTTCTGCTTCGGGGCTTCCAAGTCTCGGCTCACAGTCTGTC TTGCATCTCATGGGATGCTGGCCGCCGGGCCTACTCGAGACCGCCAAAGCCTCACTCCTTACTGTTTTTCTCTTC GCTGGCCCTATATTCGAGTGCTTATTTTTGGATGGGGTATGGAAGCAGTGGCTGCGGCTCGCACCCCTGCAGCGT CTTTGGAACGACTGGCCAACTTGGCGAAATACTGTTGTTGGCCCGGTCACTGAGGAGTTTCTCTTCCGCTCCGCT GCTGTACCTTTACTACTACTCGCAGATGCTGACTTGAAAAGCATCATTTTTCGGTCCCCCTTGGTATTTGGCCTT GCCCATGTCCATCATTTCTACGAGTTTCGCATCAGTCAACCCTACACACCTGTTTCTGCCGCCATAGCCCGCTCT GCCTTCCAGTTTTCTTACACAAGCATTTTTGGCATCTACGCTACCTTCATTTTTTTGCGTACAGGGTCTCTCCTG GCTGTCATCTGCGTACATACGACCCGATAA |
| Gene | >Ophio5|230 ATGTCTTTGGCATATTTCTACTCTTGGCACACCGGCCTGAGCAAGGCACAAGCGTACGGCCTACTGGTAAGTCCG TTTCATCATCGAAGCCTAGTAACGGCCAGGGGTAGCCAGAGTAAAGCAAGGCAAGGTGAATGGCCACGATGGGTA GCTCGGACAGCGGTTTGCTTGTCACCTGATGAGCCCGGACGTTTCTTTTGCTCGATTATACGGAGACGAAGTTTA GGCTTCATACCTCGTGTTGCACTTCCCAATATGGCCAGTCAAGCAGTTCGTGATAGCTAATCTTTTACAAAGTTG GGCTATTGCGCCATCTACGTCTTACCACTACACAGTCTATTGGCTGCCAAGCTCTCACCATCACGATCCAGAGAT GACCCCAAAGTAATTCGGGCTAGAGTGCGTGCAGTGTCTTTCTCAACGACGGCGTGCTCTCTTATTACTTTCTTT ATTCTCCGGCAGACCATCCCGGTCTCCGACTCTCGGCCGGGTTCTGCTTCGGGGCTTCCAAGTCTCGGCTCACAG TCTGTCTTGCATCTCATGGGATGCTGGCCGCCGGGCCTACTCGAGACCGCCAAAGCCTCACTCCTTACTGTTTTT CTCTTCGCTGGCCCTATATTCGAGTGCTTATTTTTGGATGGGGTATGGAAGCAGTGGCTGCGGCTCGCACCCCTG CAGCGTCTTTGGAACGACTGGCCAACTTGGCGAAATACTGTTGTTGTAGGTTCATGTCGTTGCTATCAGATCGTG CATGTTGCTAATGCTACCTTCTTTTCAACGTGTTGTTACTGATGAGTGCTCCTCTAGGGCCCGGTCACTGAGGAG TTTCTCTTCCGCTCCGCTGCTGTACCTTTACTACTACTCGCAGATGCTGACTTGAAAAGCATCATTTTTCGGTCC CCCTTGGTATTTGGCCTTGCCCATGTCCATCATTTCTACGAGTTTCGCATCAGTCAACCCTACACACCTGTTTCT GCCGCCATAGCCCGCTCTGCCTTCCAGTTTTCTTACACAAGCATTTTTGGCATCTACGCTACCTTCATTTTTTTG CGTACAGGGTCTCTCCTGGCTGTCATCTGCGTACATACGGTATGCAATTCTCTGGGACTTCCAAGGGTTTGGGGC TTTGTAGAGCCATACTGGTTGTCTTGTGACAGACCCGATAA |