Fungal Genomics

at Utrecht University

General Properties

Protein IDOphio5|2276
Gene name
Locationscaffold_194:30467..31619
Strand+
Gene length (bp)1152
Transcript length (bp)1152
Coding sequence length (bp)1149
Protein length (aa) 383

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PFAM Domains

PFAM Domain ID Short name Long name E-value Start End
PF04261 Dyp_perox Dyp-type peroxidase family 8.4E-81 78 372

Swissprot hits

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Swissprot ID Swissprot Description Start End E-value
sp|P76536|YFEX_ECOLI Probable deferrochelatase/peroxidase YfeX OS=Escherichia coli (strain K12) GN=yfeX PE=1 SV=2 126 371 2.0E-39
sp|Q66BP4|EFEB_YERPS Deferrochelatase/peroxidase EfeB OS=Yersinia pseudotuberculosis serotype I (strain IP32953) GN=efeB PE=3 SV=1 122 368 1.0E-09
sp|Q1CHD5|EFEB_YERPN Deferrochelatase/peroxidase EfeB OS=Yersinia pestis bv. Antiqua (strain Nepal516) GN=efeB PE=3 SV=1 122 368 3.0E-09
sp|Q7CI09|EFEB_YERPE Deferrochelatase/peroxidase EfeB OS=Yersinia pestis GN=efeB PE=3 SV=1 122 368 3.0E-09
sp|Q0TJ48|EFEB_ECOL5 Deferrochelatase/peroxidase EfeB OS=Escherichia coli O6:K15:H31 (strain 536 / UPEC) GN=efeB PE=3 SV=1 122 368 1.0E-08
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Swissprot ID Swissprot Description Start End E-value
sp|P76536|YFEX_ECOLI Probable deferrochelatase/peroxidase YfeX OS=Escherichia coli (strain K12) GN=yfeX PE=1 SV=2 126 371 2.0E-39
sp|Q66BP4|EFEB_YERPS Deferrochelatase/peroxidase EfeB OS=Yersinia pseudotuberculosis serotype I (strain IP32953) GN=efeB PE=3 SV=1 122 368 1.0E-09
sp|Q1CHD5|EFEB_YERPN Deferrochelatase/peroxidase EfeB OS=Yersinia pestis bv. Antiqua (strain Nepal516) GN=efeB PE=3 SV=1 122 368 3.0E-09
sp|Q7CI09|EFEB_YERPE Deferrochelatase/peroxidase EfeB OS=Yersinia pestis GN=efeB PE=3 SV=1 122 368 3.0E-09
sp|Q0TJ48|EFEB_ECOL5 Deferrochelatase/peroxidase EfeB OS=Escherichia coli O6:K15:H31 (strain 536 / UPEC) GN=efeB PE=3 SV=1 122 368 1.0E-08
sp|A1A9S3|EFEB_ECOK1 Deferrochelatase/peroxidase EfeB OS=Escherichia coli O1:K1 / APEC GN=efeB PE=3 SV=1 122 371 2.0E-08
sp|Q8XAS4|EFEB_ECO57 Deferrochelatase/peroxidase EfeB OS=Escherichia coli O157:H7 GN=efeB PE=1 SV=1 122 368 2.0E-08
sp|Q1RDJ8|EFEB_ECOUT Deferrochelatase/peroxidase EfeB OS=Escherichia coli (strain UTI89 / UPEC) GN=efeB PE=3 SV=1 122 368 2.0E-08
sp|Q8CW71|EFEB_ECOL6 Deferrochelatase/peroxidase EfeB OS=Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC) GN=efeB PE=2 SV=1 122 368 2.0E-08
sp|P31545|EFEB_ECOLI Deferrochelatase/peroxidase EfeB OS=Escherichia coli (strain K12) GN=efeB PE=1 SV=2 122 368 2.0E-08
sp|Q31Z86|EFEB_SHIBS Deferrochelatase/peroxidase EfeB OS=Shigella boydii serotype 4 (strain Sb227) GN=efeB PE=3 SV=1 122 368 2.0E-08
sp|Q3Z396|EFEB_SHISS Deferrochelatase/peroxidase EfeB OS=Shigella sonnei (strain Ss046) GN=efeB PE=3 SV=1 122 368 3.0E-08
sp|Q83LK4|EFEB_SHIFL Deferrochelatase/peroxidase EfeB OS=Shigella flexneri GN=efeB PE=3 SV=1 122 368 6.0E-08
sp|Q0T616|EFEB_SHIF8 Deferrochelatase/peroxidase EfeB OS=Shigella flexneri serotype 5b (strain 8401) GN=efeB PE=3 SV=1 122 368 6.0E-08
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GO

GO Term Description Terminal node
GO:0004601 peroxidase activity Yes
GO:0020037 heme binding Yes
GO:0005488 binding No
GO:0097159 organic cyclic compound binding No
GO:0016491 oxidoreductase activity No
GO:0003824 catalytic activity No
GO:0016684 oxidoreductase activity, acting on peroxide as acceptor No
GO:0003674 molecular_function No
GO:0046906 tetrapyrrole binding No
GO:0016209 antioxidant activity No
GO:1901363 heterocyclic compound binding No

SignalP

[Help with interpreting these statistics]
SignalP signal predicted Location
(based on Ymax)		 D score
(significance: > 0.45)
No 1 - 26 0.45

Transmembrane Domains

(None)

Transcription Factor Class

(None)

Expression data

Analysis 1: Expression analysis during behavioral modification. Published in De Bekker et al., 2017.

Expression values

Label Description Expression (RPKM) Confidence interval (low) Confidence interval (high)
SC16a Pure fungal culture 216.89 112.23 321.54
CcL In ants, during behavior modification 176.45 67.08 285.82
CcD In ants, recently dead 70.22 38.30 102.13

Differential expression

Label1 Label2 Q-value Significant difference
SC16a CcL 0.487588 no
SC16a CcD 0.000286 yes
CcL CcD 0.001851 yes

Sequences

Type of sequenceSequence
Locus Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein >Ophio5|2276
MEVPIRACNRALIIVFRPTPSATLARRYRLDPQHHRLLSRPLLRYPASGATRRTFSTRTAPAMSPPGAAPRAQAV
DGPLTQSAAFLVLSVLPGAEAAGTVRSALAGIEGLAKTVSFRDAGTSFSVTVGIGSEAWDRLTGGAARPAELHPF
RPVAGQTHTAVSTAGDVLVHIRSDRRDLCFEFERQLMKRLDGAVRVDDQTVGFRYFDQRDLLGFVDGTANPVGPA
RPASTLVTAAEDEAAVSGSYVVVQKYLHDMAAWDRLPAEKQEAIVGRTKMDNVELDDAAADEQKSHKTLATVEDD
QGVEHDILRDNMPFGAPGSGEFGTYFIGYSSRLWVMERMLDRMFIGDPPGKHDRILDYSKPVTGTVFFVPSAGFL
ANLDGGDD
Coding >Ophio5|2276
ATGGAGGTGCCGATCCGCGCGTGTAACAGAGCTCTTATTATTGTCTTCCGGCCAACTCCGAGTGCAACGCTGGCA
AGGCGCTATCGACTCGATCCGCAGCATCACCGTCTCCTCTCTCGGCCTCTCCTCCGATATCCCGCCTCCGGCGCC
ACCCGGCGCACTTTCTCTACTCGAACAGCGCCGGCTATGAGCCCCCCCGGCGCCGCTCCCCGCGCCCAGGCCGTC
GACGGCCCGCTTACGCAATCGGCCGCATTCCTGGTGCTGTCGGTGCTACCCGGAGCCGAAGCCGCCGGCACGGTC
CGGTCCGCTTTGGCCGGCATCGAGGGTCTGGCCAAGACGGTCAGCTTCCGCGACGCCGGCACCTCCTTCTCCGTC
ACCGTCGGCATTGGCAGCGAGGCCTGGGATCGGCTGACGGGCGGAGCGGCCCGGCCGGCGGAGCTACATCCATTC
CGGCCCGTTGCTGGCCAGACTCACACGGCGGTATCGACGGCCGGCGACGTACTTGTTCATATTCGTTCCGACCGG
CGCGACCTTTGCTTCGAGTTCGAGCGCCAGCTGATGAAGCGTCTTGACGGAGCCGTGCGAGTCGACGATCAGACC
GTCGGCTTCCGCTATTTCGATCAGCGCGATCTCCTCGGCTTTGTCGACGGCACTGCGAATCCCGTAGGTCCGGCC
CGACCGGCCTCGACCCTCGTCACGGCGGCTGAAGACGAGGCTGCGGTGTCCGGCAGCTACGTCGTCGTCCAGAAG
TATCTCCATGATATGGCTGCCTGGGACCGTCTCCCGGCCGAGAAGCAGGAAGCCATCGTTGGCCGCACCAAGATG
GACAATGTCGAGCTGGATGACGCGGCCGCCGACGAGCAGAAATCACACAAGACGCTGGCTACCGTCGAGGACGAT
CAAGGGGTCGAGCACGACATTCTTCGCGATAATATGCCCTTTGGCGCCCCCGGCTCCGGCGAGTTTGGCACCTAC
TTCATCGGTTACTCGAGCCGGCTCTGGGTCATGGAACGAATGCTGGACCGCATGTTCATTGGCGATCCTCCGGGG
AAGCACGACCGCATCCTCGACTATTCCAAGCCCGTCACCGGCACCGTCTTCTTCGTGCCCTCTGCTGGCTTTCTA
GCCAATCTTGATGGCGGCGACGAC
Transcript >Ophio5|2276
ATGGAGGTGCCGATCCGCGCGTGTAACAGAGCTCTTATTATTGTCTTCCGGCCAACTCCGAGTGCAACGCTGGCA
AGGCGCTATCGACTCGATCCGCAGCATCACCGTCTCCTCTCTCGGCCTCTCCTCCGATATCCCGCCTCCGGCGCC
ACCCGGCGCACTTTCTCTACTCGAACAGCGCCGGCTATGAGCCCCCCCGGCGCCGCTCCCCGCGCCCAGGCCGTC
GACGGCCCGCTTACGCAATCGGCCGCATTCCTGGTGCTGTCGGTGCTACCCGGAGCCGAAGCCGCCGGCACGGTC
CGGTCCGCTTTGGCCGGCATCGAGGGTCTGGCCAAGACGGTCAGCTTCCGCGACGCCGGCACCTCCTTCTCCGTC
ACCGTCGGCATTGGCAGCGAGGCCTGGGATCGGCTGACGGGCGGAGCGGCCCGGCCGGCGGAGCTACATCCATTC
CGGCCCGTTGCTGGCCAGACTCACACGGCGGTATCGACGGCCGGCGACGTACTTGTTCATATTCGTTCCGACCGG
CGCGACCTTTGCTTCGAGTTCGAGCGCCAGCTGATGAAGCGTCTTGACGGAGCCGTGCGAGTCGACGATCAGACC
GTCGGCTTCCGCTATTTCGATCAGCGCGATCTCCTCGGCTTTGTCGACGGCACTGCGAATCCCGTAGGTCCGGCC
CGACCGGCCTCGACCCTCGTCACGGCGGCTGAAGACGAGGCTGCGGTGTCCGGCAGCTACGTCGTCGTCCAGAAG
TATCTCCATGATATGGCTGCCTGGGACCGTCTCCCGGCCGAGAAGCAGGAAGCCATCGTTGGCCGCACCAAGATG
GACAATGTCGAGCTGGATGACGCGGCCGCCGACGAGCAGAAATCACACAAGACGCTGGCTACCGTCGAGGACGAT
CAAGGGGTCGAGCACGACATTCTTCGCGATAATATGCCCTTTGGCGCCCCCGGCTCCGGCGAGTTTGGCACCTAC
TTCATCGGTTACTCGAGCCGGCTCTGGGTCATGGAACGAATGCTGGACCGCATGTTCATTGGCGATCCTCCGGGG
AAGCACGACCGCATCCTCGACTATTCCAAGCCCGTCACCGGCACCGTCTTCTTCGTGCCCTCTGCTGGCTTTCTA
GCCAATCTTGATGGCGGCGACGACTGA
Gene >Ophio5|2276
ATGGAGGTGCCGATCCGCGCGTGTAACAGAGCTCTTATTATTGTCTTCCGGCCAACTCCGAGTGCAACGCTGGCA
AGGCGCTATCGACTCGATCCGCAGCATCACCGTCTCCTCTCTCGGCCTCTCCTCCGATATCCCGCCTCCGGCGCC
ACCCGGCGCACTTTCTCTACTCGAACAGCGCCGGCTATGAGCCCCCCCGGCGCCGCTCCCCGCGCCCAGGCCGTC
GACGGCCCGCTTACGCAATCGGCCGCATTCCTGGTGCTGTCGGTGCTACCCGGAGCCGAAGCCGCCGGCACGGTC
CGGTCCGCTTTGGCCGGCATCGAGGGTCTGGCCAAGACGGTCAGCTTCCGCGACGCCGGCACCTCCTTCTCCGTC
ACCGTCGGCATTGGCAGCGAGGCCTGGGATCGGCTGACGGGCGGAGCGGCCCGGCCGGCGGAGCTACATCCATTC
CGGCCCGTTGCTGGCCAGACTCACACGGCGGTATCGACGGCCGGCGACGTACTTGTTCATATTCGTTCCGACCGG
CGCGACCTTTGCTTCGAGTTCGAGCGCCAGCTGATGAAGCGTCTTGACGGAGCCGTGCGAGTCGACGATCAGACC
GTCGGCTTCCGCTATTTCGATCAGCGCGATCTCCTCGGCTTTGTCGACGGCACTGCGAATCCCGTAGGTCCGGCC
CGACCGGCCTCGACCCTCGTCACGGCGGCTGAAGACGAGGCTGCGGTGTCCGGCAGCTACGTCGTCGTCCAGAAG
TATCTCCATGATATGGCTGCCTGGGACCGTCTCCCGGCCGAGAAGCAGGAAGCCATCGTTGGCCGCACCAAGATG
GACAATGTCGAGCTGGATGACGCGGCCGCCGACGAGCAGAAATCACACAAGACGCTGGCTACCGTCGAGGACGAT
CAAGGGGTCGAGCACGACATTCTTCGCGATAATATGCCCTTTGGCGCCCCCGGCTCCGGCGAGTTTGGCACCTAC
TTCATCGGTTACTCGAGCCGGCTCTGGGTCATGGAACGAATGCTGGACCGCATGTTCATTGGCGATCCTCCGGGG
AAGCACGACCGCATCCTCGACTATTCCAAGCCCGTCACCGGCACCGTCTTCTTCGTGCCCTCTGCTGGCTTTCTA
GCCAATCTTGATGGCGGCGACGACTGA

© 2022 - Robin Ohm - Utrecht University - The Netherlands

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