© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Ophio5|2254 |
| Gene name | |
| Location | scaffold_193:13124..15237 |
| Strand | + |
| Gene length (bp) | 2113 |
| Transcript length (bp) | 1956 |
| Coding sequence length (bp) | 1953 |
| Protein length (aa) | 651 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF05277 | DUF726 | Protein of unknown function (DUF726) | 3.3E-107 | 277 | 634 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|Q9US10|YK68_SCHPO | Uncharacterized membrane protein C6F6.13c OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPAC607.08c PE=3 SV=1 | 174 | 635 | 6.0E-69 |
| sp|Q91WU4|TMCO4_MOUSE | Transmembrane and coiled-coil domain-containing protein 4 OS=Mus musculus GN=Tmco4 PE=2 SV=2 | 213 | 635 | 2.0E-56 |
| sp|Q5TGY1|TMCO4_HUMAN | Transmembrane and coiled-coil domain-containing protein 4 OS=Homo sapiens GN=TMCO4 PE=2 SV=1 | 213 | 635 | 2.0E-54 |
| sp|Q499U8|TMCO4_RAT | Transmembrane and coiled-coil domain-containing protein 4 OS=Rattus norvegicus GN=Tmco4 PE=2 SV=1 | 199 | 635 | 3.0E-53 |
| sp|O14244|YELD_SCHPO | Uncharacterized membrane protein C6F6.13c OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPAC6F6.13c PE=3 SV=1 | 195 | 629 | 2.0E-48 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|Q9US10|YK68_SCHPO | Uncharacterized membrane protein C6F6.13c OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPAC607.08c PE=3 SV=1 | 174 | 635 | 6.0E-69 |
| sp|Q91WU4|TMCO4_MOUSE | Transmembrane and coiled-coil domain-containing protein 4 OS=Mus musculus GN=Tmco4 PE=2 SV=2 | 213 | 635 | 2.0E-56 |
| sp|Q5TGY1|TMCO4_HUMAN | Transmembrane and coiled-coil domain-containing protein 4 OS=Homo sapiens GN=TMCO4 PE=2 SV=1 | 213 | 635 | 2.0E-54 |
| sp|Q499U8|TMCO4_RAT | Transmembrane and coiled-coil domain-containing protein 4 OS=Rattus norvegicus GN=Tmco4 PE=2 SV=1 | 199 | 635 | 3.0E-53 |
| sp|O14244|YELD_SCHPO | Uncharacterized membrane protein C6F6.13c OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPAC6F6.13c PE=3 SV=1 | 195 | 629 | 2.0E-48 |
| sp|Q20035|TMCO4_CAEEL | Uncharacterized membrane protein F35D11.3 OS=Caenorhabditis elegans GN=F35D11.3 PE=3 SV=2 | 205 | 634 | 4.0E-45 |
| sp|P43564|YFD4_YEAST | Uncharacterized membrane protein YFL034W OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=YFL034W PE=1 SV=2 | 204 | 635 | 2.0E-40 |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 15 | 0.45 |
| Domain # | Start | End | Length |
|---|---|---|---|
| 1 | 285 | 307 | 22 |
| 2 | 322 | 344 | 22 |
| 3 | 461 | 483 | 22 |
Expression values
| Label | Description | Expression (RPKM) | Confidence interval (low) | Confidence interval (high) |
|---|---|---|---|---|
| SC16a | Pure fungal culture | 36.81 | 20.04 | 53.58 |
| CcL | In ants, during behavior modification | 24.31 | 12.49 | 36.12 |
| CcD | In ants, recently dead | 17.74 | 8.58 | 26.89 |
Differential expression
| Label1 | Label2 | Q-value | Significant difference |
|---|---|---|---|
| SC16a | CcL | 0.075303 | no |
| SC16a | CcD | 0.001217 | yes |
| CcL | CcD | 0.211863 | no |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Ophio5|2254 MAPLCADPRQVVIALDVTQRLSLLQLVQDITSYMISQLEAPTDQLGPVSPGEENDGVGGGTGPSLDAQQQKLTSI EKPTQEASTGKVAQETSSDKPPQEAATNNPPHKPSIGRAAQDAKSIQLAAMDNLRQWRDEFLPRLRDIAEVKDSS AIEAERQARREKLKKEDAETTESSSPEDVTQLQSLYRPMPTPLTELPPQDRREALTCTLLLLLATGKYSAHSRAL MLYLASALALPPTFVNEQEGEIAKSLMESSNADGKENMSAEAEAAKRQEENKLSRYWKVGLASVAGAAVIGVTGG LAAPLVAGAISGIMGGVGLGGVASFLGIFWANGALVGALFGAYGAKMTGEMMDNYAKEVEDFRFIPLDQDQQQTD QPSEKTDKGQQQAKAEQRRLRVTIGINGWLSSESDIQKPWLVLGADSEAFALRYELKTLLGLGSALNDLVHSLAW KTVKRELVKRTALATLLAALWPVQILAAASTSIDNPFQRARHRSRKAGRLLADALVNRVQGERPVALVGYSLGAS AIHACLQELADRRAFGLVDSVVLIGAPAPAASDHWRALRPVVSGTIFNVYSENDLVLGLVYRLHALDYGVAGLQP VHGVPALRNVDFSAHVTGHLRYPLLTADILRRCGFLPPQVVNTQQAGGESP |
| Coding | >Ophio5|2254 ATGGCGCCCCTCTGCGCGGACCCGCGTCAAGTCGTCATCGCACTCGACGTTACTCAGCGCCTCTCGCTCCTCCAA CTCGTCCAGGATATCACCTCGTACATGATATCCCAGCTCGAAGCGCCAACCGATCAGCTTGGCCCCGTCTCCCCA GGAGAGGAAAATGATGGGGTCGGCGGCGGAACAGGGCCATCGCTTGACGCGCAGCAGCAAAAGCTGACGTCCATC GAGAAGCCTACGCAAGAGGCGTCCACCGGCAAGGTCGCGCAAGAGACGTCATCCGACAAGCCTCCCCAAGAGGCG GCCACCAACAACCCCCCTCATAAGCCGTCCATCGGTAGAGCTGCCCAAGATGCCAAGAGCATACAGCTAGCGGCC ATGGATAATCTCAGGCAATGGAGAGACGAATTCCTCCCCCGACTGCGCGACATCGCCGAGGTCAAGGACAGCTCC GCCATCGAAGCCGAGCGGCAGGCCAGGCGAGAGAAGCTGAAGAAAGAGGACGCAGAAACGACCGAGAGCAGCTCA CCAGAAGACGTGACGCAGCTGCAGTCCCTCTACCGTCCCATGCCCACACCCCTGACCGAGCTCCCCCCGCAAGAC AGACGCGAAGCTCTCACCTGCACCCTCCTGCTCCTCCTCGCAACGGGGAAATACTCGGCCCACTCGCGCGCCCTG ATGCTATACCTTGCGTCCGCCCTGGCACTACCCCCCACCTTCGTCAACGAGCAAGAAGGCGAGATAGCCAAGTCG CTTATGGAGTCTTCGAATGCAGACGGTAAGGAAAACATGTCCGCCGAGGCCGAAGCCGCCAAGCGTCAAGAGGAG AACAAGCTCAGTCGGTACTGGAAAGTCGGCCTCGCGTCCGTGGCGGGAGCGGCCGTCATCGGCGTCACGGGCGGT CTGGCGGCGCCGCTCGTGGCCGGCGCCATCAGCGGCATCATGGGCGGTGTCGGCCTGGGCGGAGTCGCTAGCTTT CTCGGTATCTTCTGGGCGAATGGTGCGCTGGTCGGGGCCCTGTTTGGCGCGTACGGCGCAAAGATGACGGGCGAG ATGATGGACAACTACGCAAAAGAAGTCGAAGACTTCCGCTTCATCCCCCTGGACCAAGACCAGCAGCAGACAGAC CAGCCGTCAGAGAAGACAGACAAAGGCCAACAGCAAGCCAAGGCAGAGCAGCGCCGGCTCCGCGTCACCATCGGC ATCAACGGCTGGCTCAGCTCGGAAAGCGACATCCAGAAACCCTGGCTCGTGCTCGGCGCCGACTCGGAAGCGTTC GCTCTACGGTACGAGCTCAAGACTCTTCTCGGCCTCGGCTCGGCCCTCAACGACCTCGTCCACTCGCTCGCTTGG AAGACGGTCAAGCGGGAACTCGTCAAGCGCACCGCCCTCGCCACCCTCCTCGCAGCATTGTGGCCCGTCCAGATC CTGGCGGCGGCATCGACCTCCATCGACAACCCCTTTCAGCGCGCCCGTCACCGATCCCGCAAGGCGGGCCGTCTC CTGGCCGACGCCCTCGTCAATAGAGTGCAGGGAGAGCGTCCGGTAGCCCTGGTGGGCTACTCGCTAGGCGCTTCC GCCATACATGCATGTCTGCAGGAACTCGCCGACCGGCGCGCCTTCGGCCTCGTCGACTCCGTCGTCCTCATCGGG GCGCCCGCCCCCGCCGCCTCGGACCATTGGCGCGCCTTGCGTCCCGTCGTGTCCGGTACCATCTTCAACGTCTAC TCGGAGAATGACCTCGTCCTCGGCCTCGTCTATCGTTTGCATGCCCTCGATTATGGCGTCGCCGGCCTGCAGCCC GTTCATGGTGTGCCCGCTCTTCGGAACGTAGACTTCTCCGCTCATGTTACAGGCCATTTGCGCTACCCGCTGCTG ACGGCTGATATCCTTCGTCGCTGCGGCTTCCTCCCCCCCCAAGTTGTTAATACGCAGCAAGCAGGAGGCGAATCT CCA |
| Transcript | >Ophio5|2254 ATGGCGCCCCTCTGCGCGGACCCGCGTCAAGTCGTCATCGCACTCGACGTTACTCAGCGCCTCTCGCTCCTCCAA CTCGTCCAGGATATCACCTCGTACATGATATCCCAGCTCGAAGCGCCAACCGATCAGCTTGGCCCCGTCTCCCCA GGAGAGGAAAATGATGGGGTCGGCGGCGGAACAGGGCCATCGCTTGACGCGCAGCAGCAAAAGCTGACGTCCATC GAGAAGCCTACGCAAGAGGCGTCCACCGGCAAGGTCGCGCAAGAGACGTCATCCGACAAGCCTCCCCAAGAGGCG GCCACCAACAACCCCCCTCATAAGCCGTCCATCGGTAGAGCTGCCCAAGATGCCAAGAGCATACAGCTAGCGGCC ATGGATAATCTCAGGCAATGGAGAGACGAATTCCTCCCCCGACTGCGCGACATCGCCGAGGTCAAGGACAGCTCC GCCATCGAAGCCGAGCGGCAGGCCAGGCGAGAGAAGCTGAAGAAAGAGGACGCAGAAACGACCGAGAGCAGCTCA CCAGAAGACGTGACGCAGCTGCAGTCCCTCTACCGTCCCATGCCCACACCCCTGACCGAGCTCCCCCCGCAAGAC AGACGCGAAGCTCTCACCTGCACCCTCCTGCTCCTCCTCGCAACGGGGAAATACTCGGCCCACTCGCGCGCCCTG ATGCTATACCTTGCGTCCGCCCTGGCACTACCCCCCACCTTCGTCAACGAGCAAGAAGGCGAGATAGCCAAGTCG CTTATGGAGTCTTCGAATGCAGACGGTAAGGAAAACATGTCCGCCGAGGCCGAAGCCGCCAAGCGTCAAGAGGAG AACAAGCTCAGTCGGTACTGGAAAGTCGGCCTCGCGTCCGTGGCGGGAGCGGCCGTCATCGGCGTCACGGGCGGT CTGGCGGCGCCGCTCGTGGCCGGCGCCATCAGCGGCATCATGGGCGGTGTCGGCCTGGGCGGAGTCGCTAGCTTT CTCGGTATCTTCTGGGCGAATGGTGCGCTGGTCGGGGCCCTGTTTGGCGCGTACGGCGCAAAGATGACGGGCGAG ATGATGGACAACTACGCAAAAGAAGTCGAAGACTTCCGCTTCATCCCCCTGGACCAAGACCAGCAGCAGACAGAC CAGCCGTCAGAGAAGACAGACAAAGGCCAACAGCAAGCCAAGGCAGAGCAGCGCCGGCTCCGCGTCACCATCGGC ATCAACGGCTGGCTCAGCTCGGAAAGCGACATCCAGAAACCCTGGCTCGTGCTCGGCGCCGACTCGGAAGCGTTC GCTCTACGGTACGAGCTCAAGACTCTTCTCGGCCTCGGCTCGGCCCTCAACGACCTCGTCCACTCGCTCGCTTGG AAGACGGTCAAGCGGGAACTCGTCAAGCGCACCGCCCTCGCCACCCTCCTCGCAGCATTGTGGCCCGTCCAGATC CTGGCGGCGGCATCGACCTCCATCGACAACCCCTTTCAGCGCGCCCGTCACCGATCCCGCAAGGCGGGCCGTCTC CTGGCCGACGCCCTCGTCAATAGAGTGCAGGGAGAGCGTCCGGTAGCCCTGGTGGGCTACTCGCTAGGCGCTTCC GCCATACATGCATGTCTGCAGGAACTCGCCGACCGGCGCGCCTTCGGCCTCGTCGACTCCGTCGTCCTCATCGGG GCGCCCGCCCCCGCCGCCTCGGACCATTGGCGCGCCTTGCGTCCCGTCGTGTCCGGTACCATCTTCAACGTCTAC TCGGAGAATGACCTCGTCCTCGGCCTCGTCTATCGTTTGCATGCCCTCGATTATGGCGTCGCCGGCCTGCAGCCC GTTCATGGTGTGCCCGCTCTTCGGAACGTAGACTTCTCCGCTCATGTTACAGGCCATTTGCGCTACCCGCTGCTG ACGGCTGATATCCTTCGTCGCTGCGGCTTCCTCCCCCCCCAAGTTGTTAATACGCAGCAAGCAGGAGGCGAATCT CCATAG |
| Gene | >Ophio5|2254 ATGGCGCCCCTCTGCGCGGACCCGCGTCAAGTCGTCATCGCACTCGACGTTACTCAGCGCCTCTCGCTCCTCCAA CTCGTCCAGGATATCACCTCGTACATGATATCCCAGCTCGAAGCGCCAACCGATCAGCTTGGCCCCGTCTCCCCA GGAGAGGAAAATGATGGGGTCGGCGGCGGAACAGGGCCATCGCTTGACGCGCAGCAGCAAAAGCTGACGTCCATC GAGAAGCCTACGCAAGAGGCGTCCACCGGCAAGGTCGCGCAAGAGACGTCATCCGACAAGCCTCCCCAAGAGGCG GCCACCAACAACCCCCCTCATAAGCCGTCCATCGGTAGAGCTGCCCAAGATGCCAAGAGCATACAGCTAGCGGCC ATGGATAATCTCAGGCAATGGAGAGACGAATTCCTCCCCCGACTGCGCGACATCGCCGAGGTCAAGGACAGCTCC GCCATCGAAGCCGAGCGGCAGGCCAGGCGAGAGAAGCTGAAGAAAGAGGACGCAGAAACGACCGAGAGCAGCTCA CCAGAAGACGTGACGCAGCTGCAGTCCCTCTACCGTCCCATGCCCACACCCCTGACCGAGCTCCCCCCGCAAGAC AGACGCGAAGCTCTCACCTGCACCCTCCTGCTCCTCCTCGCAACGGGGAAATACTCGGCCCACTCGCGCGCCCTG ATGCTATACCTTGCGTCCGCCCTGGCACTACCCCCCACCTTCGTCAACGAGCAAGAAGGCGAGATAGCCAAGTCG CTTATGGAGTCTTCGAATGCAGACGGTAAGGAAAACATGTCCGCCGAGGCCGAAGCCGCCAAGCGTCAAGAGGAG AACAAGCTCAGTCGGTACTGGAAAGTCGGCCTCGCGTCCGTGGCGGGAGCGGCCGTCATCGGCGTCACGGGCGGT CTGGCGGCGCCGCTCGTGGCCGGCGCCATCAGCGGCATCATGGGCGGTGTCGGCCTGGGCGGAGTCGCTAGCTTT CTCGGTATCTTCTGGGCGAATGGTGCGCTGGTCGGGGCCCTGTTTGGCGCGTACGGCGCAAAGATGACGGTGAGA ATCGGTTTCTTTCTTTTTTTTTTTCCTTCCCGGTAAGGGGGGGGGGTTCCGTGGACATGCCCAAGCTGAGAAGAA TGTCCTCATGTCCCAGGGCGAGATGATGGACAACTACGCAAAAGAAGTCGAAGACTTCCGCTTCATCCCCCTGGA CCAAGACCAGCAGCAGACAGACCAGCCGTCAGAGAAGACAGACAAAGGCCAACAGCAAGCCAAGGCAGAGCAGCG CCGGCTCCGCGTCACCATCGGCATCAACGGCTGGCTCAGCTCGGAAAGCGACATCCAGAAACCCTGGCTCGTGCT CGGCGCCGACTCGGAAGCGTTCGCTCTACGGTACGAGCTCAAGACTCTTCTCGGCCTCGGCTCGGCCCTCAACGA CCTCGTCCACTCGCTCGCTTGGAAGACGGTCAAGCGGGAACTCGTCAAGCGCACCGCCCTCGCCACCCTCCTCGC AGCATTGTGGCCCGTCCAGATCCTGGCGGCGGCATCGACCTCCATCGACAACCCCTTTCAGCGCGCCCGTCACCG ATCCCGCAAGGCGGGCCGTCTCCTGGCCGACGCCCTCGTCAATAGAGTGCAGGGAGAGCGTCCGGTAGCCCTGGT GGGCTACTCGCTAGGCGCTTCCGCCATACATGCATGTCTGCAGGAACTCGCCGACCGGCGCGCCTTCGGCCTCGT CGACTCCGTCGTCCTCATCGGGGCGCCCGCCCCCGCCGCCTCGGACCATTGGCGCGCCTTGCGTCCCGTCGTGTC CGGTACCATCTTCAACGTCTACTCGGAGAATGACCTCGTCCTCGGCCTCGTCTATCGTTTGCATGCCCTCGATTA TGGCGTCGCCGGCCTGCAGCCCGTTCATGGTGTGCCCGCTCTTCGGAACGTAGACTTCTCCGCTCATGTTACAGG CCATTTGCGCTACCCGCTGCTGACGGCTGATATCCTTCGTCGCTGCGGCTTCCTCGTACGTCCCGCTGACGCGCA GGAGCAGCCTGATTCCGACACTGCGGCTGATGGCGAGCAGCCCCCCCAAGTTGTTAATACGCAGCAAGCAGGAGG CGAATCTCCATAG |