Fungal Genomics

at Utrecht University

General Properties

Protein IDOphio5|2225
Gene name
Locationscaffold_191:24702..25266
Strand-
Gene length (bp)564
Transcript length (bp)291
Coding sequence length (bp)288
Protein length (aa) 96

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PFAM Domains

PFAM Domain ID Short name Long name E-value Start End
PF04911 ATP-synt_J ATP synthase j chain 4.3E-26 46 95

Swissprot hits

Swissprot ID Swissprot Description Start End E-value
sp|O13931|ATP18_SCHPO ATP synthase subunit J, mitochondrial OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=atp18 PE=4 SV=1 36 90 1.0E-12
sp|P81450|ATP18_YEAST ATP synthase subunit J, mitochondrial OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=ATP18 PE=1 SV=1 44 95 3.0E-08

GO

GO Term Description Terminal node
GO:0045263 proton-transporting ATP synthase complex, coupling factor F(o) Yes
GO:0015078 proton transmembrane transporter activity Yes
GO:0015986 proton motive force-driven ATP synthesis Yes
GO:1901293 nucleoside phosphate biosynthetic process No
GO:0009152 purine ribonucleotide biosynthetic process No
GO:0009987 cellular process No
GO:0071704 organic substance metabolic process No
GO:0009165 nucleotide biosynthetic process No
GO:0006754 ATP biosynthetic process No
GO:0009142 nucleoside triphosphate biosynthetic process No
GO:0015075 ion transmembrane transporter activity No
GO:0022890 inorganic cation transmembrane transporter activity No
GO:0008152 metabolic process No
GO:0006793 phosphorus metabolic process No
GO:0009206 purine ribonucleoside triphosphate biosynthetic process No
GO:0005215 transporter activity No
GO:0009145 purine nucleoside triphosphate biosynthetic process No
GO:0003674 molecular_function No
GO:0044237 cellular metabolic process No
GO:0006164 purine nucleotide biosynthetic process No
GO:0044281 small molecule metabolic process No
GO:0008150 biological_process No
GO:0006725 cellular aromatic compound metabolic process No
GO:0018130 heterocycle biosynthetic process No
GO:1901564 organonitrogen compound metabolic process No
GO:0046390 ribose phosphate biosynthetic process No
GO:1901566 organonitrogen compound biosynthetic process No
GO:0032991 protein-containing complex No
GO:0033177 proton-transporting two-sector ATPase complex, proton-transporting domain No
GO:0006796 phosphate-containing compound metabolic process No
GO:0046034 ATP metabolic process No
GO:0044238 primary metabolic process No
GO:0046483 heterocycle metabolic process No
GO:0009201 ribonucleoside triphosphate biosynthetic process No
GO:1901576 organic substance biosynthetic process No
GO:0006139 nucleobase-containing compound metabolic process No
GO:0009141 nucleoside triphosphate metabolic process No
GO:0009260 ribonucleotide biosynthetic process No
GO:0019438 aromatic compound biosynthetic process No
GO:0009117 nucleotide metabolic process No
GO:0009058 biosynthetic process No
GO:0044249 cellular biosynthetic process No
GO:0022857 transmembrane transporter activity No
GO:0006753 nucleoside phosphate metabolic process No
GO:0098796 membrane protein complex No
GO:0034641 cellular nitrogen compound metabolic process No
GO:0090407 organophosphate biosynthetic process No
GO:0006807 nitrogen compound metabolic process No
GO:0009150 purine ribonucleotide metabolic process No
GO:1901362 organic cyclic compound biosynthetic process No
GO:0009144 purine nucleoside triphosphate metabolic process No
GO:0015318 inorganic molecular entity transmembrane transporter activity No
GO:0009205 purine ribonucleoside triphosphate metabolic process No
GO:0072521 purine-containing compound metabolic process No
GO:1901135 carbohydrate derivative metabolic process No
GO:0072522 purine-containing compound biosynthetic process No
GO:0006163 purine nucleotide metabolic process No
GO:0019693 ribose phosphate metabolic process No
GO:0009199 ribonucleoside triphosphate metabolic process No
GO:0034654 nucleobase-containing compound biosynthetic process No
GO:1901360 organic cyclic compound metabolic process No
GO:0019637 organophosphate metabolic process No
GO:0008324 cation transmembrane transporter activity No
GO:1901137 carbohydrate derivative biosynthetic process No
GO:0009259 ribonucleotide metabolic process No
GO:0005575 cellular_component No
GO:0044271 cellular nitrogen compound biosynthetic process No
GO:0055086 nucleobase-containing small molecule metabolic process No

SignalP

[Help with interpreting these statistics]
SignalP signal predicted Location
(based on Ymax)		 D score
(significance: > 0.45)
No 1 - 58 0.5

Transmembrane Domains

Domain # Start End Length
1 55 77 22

Transcription Factor Class

(None)

Expression data

Analysis 1: Expression analysis during behavioral modification. Published in De Bekker et al., 2017.

Expression values

Label Description Expression (RPKM) Confidence interval (low) Confidence interval (high)
SC16a Pure fungal culture 640.22 347.15 933.30
CcL In ants, during behavior modification 477.90 254.88 700.92
CcD In ants, recently dead 857.20 466.02 1248.38

Differential expression

Label1 Label2 Q-value Significant difference
SC16a CcL 0.218672 no
SC16a CcD 0.220678 no
CcL CcD 0.007640 yes

Sequences

Type of sequenceSequence
Locus Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein >Ophio5|2225
MAASATSPARRNNLEKTGHRRKAAKKKHATSTAPTMAWLGIEPLKKFPAPFLKPMAPFFAAGVIIAYGVNSLQGA
LMETDEWKNDPRNPKVKAGGH
Coding >Ophio5|2225
ATGGCAGCTTCAGCTACTTCCCCGGCTCGACGCAACAATCTCGAAAAGACCGGTCATCGCCGCAAAGCCGCGAAG
AAGAAACACGCAACAAGCACAGCACCGACAATGGCTTGGCTCGGCATCGAACCTCTGAAAAAATTTCCGGCTCCC
TTCCTGAAGCCGATGGCGCCCTTCTTCGCGGCTGGCGTCATCATAGCCTACGGAGTCAACTCGCTCCAGGGCGCC
CTGATGGAAACCGACGAGTGGAAGAACGACCCTCGGAACCCCAAAGTCAAGGCTGGCGGCCAC
Transcript >Ophio5|2225
ATGGCAGCTTCAGCTACTTCCCCGGCTCGACGCAACAATCTCGAAAAGACCGGTCATCGCCGCAAAGCCGCGAAG
AAGAAACACGCAACAAGCACAGCACCGACAATGGCTTGGCTCGGCATCGAACCTCTGAAAAAATTTCCGGCTCCC
TTCCTGAAGCCGATGGCGCCCTTCTTCGCGGCTGGCGTCATCATAGCCTACGGAGTCAACTCGCTCCAGGGCGCC
CTGATGGAAACCGACGAGTGGAAGAACGACCCTCGGAACCCCAAAGTCAAGGCTGGCGGCCACTGA
Gene >Ophio5|2225
ATGGCAGCTTCAGCTACTTCCCCGGCTCGACGCAACAATCTCGAAAAGACCGGTCATCGCCGCAAAGCCGCGAAG
AAGAAACACGCAACAAGCACAGCACCGACAATGGCTTGGCTCGGCATCGAACCTCTGAAAAAATTTCCGGCTCCC
TTCCGTACGCCCCAAGTCCAGCTCCGCGGCAAACAAGATGCTGACCTCGATGCGTGCTAATTGCAGTGAAGCCGA
TGGCGCCCTTCTTCGCGGCTGGTACGTGCTTTCTCGCAAATGGCAAATCCTCCAGCAGCAATCATCTTGGGATGA
CTCGAGTTGGGCGTGGTGGCTGACGGCGGCGTAGGCGTCATCATAGCCTACGGAGTCAACTCGCTCCAGGGCGCC
CTGATGGAAAGTACGAGCTTCTGTTTCTCGCACTTCCTTACGTGGCAATCTTTGCCCCCTTCTCTACGCCCTTTC
AGCTCGAAAGTTGCCGTTGAACCGTGGTCAGAAGGCGAGGCTGACGGAGCTATAACAGCCGACGAGTGGAAGAAC
GACCCTCGGAACCCCAAAGTCAAGGCTGGCGGCCACTGA

© 2022 - Robin Ohm - Utrecht University - The Netherlands

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