Protein ID | Ophio5|2220 |
Gene name | |
Location | scaffold_191:14967..16016 |
Strand | + |
Gene length (bp) | 1049 |
Transcript length (bp) | 924 |
Coding sequence length (bp) | 921 |
Protein length (aa) | 307 |
SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
---|---|---|
No | 1 - 12 | 0.45 |
Domain # | Start | End | Length |
---|---|---|---|
1 | 131 | 153 | 22 |
Expression values
Label | Description | Expression (RPKM) | Confidence interval (low) | Confidence interval (high) |
---|---|---|---|---|
SC16a | Pure fungal culture | 7.57 | 2.11 | 13.02 |
CcL | In ants, during behavior modification | 5.03 | 1.14 | 8.91 |
CcD | In ants, recently dead | 3.18 | 0.39 | 5.98 |
Differential expression
Label1 | Label2 | Q-value | Significant difference |
---|---|---|---|
SC16a | CcL | 0.295748 | no |
SC16a | CcD | 0.034925 | yes |
CcL | CcD | 0.302593 | no |
Type of sequence | Sequence |
---|---|
Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
Protein | >Ophio5|2220 MAVHPTDAAAQGMAIHGLRFINDEWNDSISNGDVFTVRWNQSLSKVGSGLGVFQVTYPKDGVVVYELVSNLTDAI EGDGASCKWTPQNLDKKGLYAMWLTSGQANHPNWTLSPPWVPKAGAGSQSSPWAAPFLIPVICLLGLYAISLTGY LVYRRRKKARMERAMANSNAIRGRSFSVTSPITAHVLAGPETGIEKSGVVGMVNASPIISRDSRLSSSGIRRSRT AQPDDDDDDDDDDDDDDDRLRLPRHPRGRGIRIVTTGGPSSEAEERLLMTPVHSAGSTTSSAQQTPVGRNFSRPV QTQRSFA |
Coding | >Ophio5|2220 ATGGCCGTTCATCCAACAGACGCCGCCGCTCAGGGCATGGCCATCCACGGCCTTCGCTTCATCAACGATGAGTGG AACGACAGCATCTCTAACGGCGACGTCTTCACCGTCCGATGGAACCAGTCTCTGTCCAAAGTCGGCTCCGGCCTG GGTGTGTTCCAAGTAACGTATCCGAAGGACGGCGTCGTCGTCTACGAGCTGGTATCGAATCTAACTGATGCCATC GAGGGCGACGGCGCCTCGTGTAAATGGACGCCGCAGAATCTGGACAAGAAGGGCCTCTATGCCATGTGGCTCACG TCTGGACAAGCCAATCATCCCAATTGGACTCTGTCGCCTCCTTGGGTCCCCAAAGCAGGGGCCGGATCGCAGAGC TCCCCGTGGGCGGCGCCCTTTCTCATCCCCGTCATATGTCTGCTCGGCCTCTACGCCATCTCTTTGACAGGCTAC CTGGTCTATCGCCGTCGGAAAAAGGCCAGGATGGAGAGGGCCATGGCGAATTCCAACGCCATTCGCGGTCGCAGC TTCTCCGTCACTTCGCCCATCACGGCGCATGTTCTCGCTGGACCCGAGACCGGCATCGAGAAGAGCGGCGTCGTC GGCATGGTCAACGCTAGCCCGATCATCAGTAGAGACAGCCGTCTCAGCTCGTCCGGAATCCGTCGCTCAAGGACA GCTCAACCCGACGATGATGATGATGATGACGACGACGACGACGACGACGACGACAGGCTCCGGCTTCCCCGGCAC CCAAGAGGTCGCGGAATCCGCATCGTCACCACCGGTGGCCCGAGCTCTGAAGCCGAGGAAAGGCTTTTGATGACG CCCGTCCATAGCGCCGGATCAACAACGTCCAGCGCGCAACAAACTCCCGTCGGCCGCAACTTTTCCCGGCCTGTA CAAACACAAAGAAGCTTTGCA |
Transcript | >Ophio5|2220 ATGGCCGTTCATCCAACAGACGCCGCCGCTCAGGGCATGGCCATCCACGGCCTTCGCTTCATCAACGATGAGTGG AACGACAGCATCTCTAACGGCGACGTCTTCACCGTCCGATGGAACCAGTCTCTGTCCAAAGTCGGCTCCGGCCTG GGTGTGTTCCAAGTAACGTATCCGAAGGACGGCGTCGTCGTCTACGAGCTGGTATCGAATCTAACTGATGCCATC GAGGGCGACGGCGCCTCGTGTAAATGGACGCCGCAGAATCTGGACAAGAAGGGCCTCTATGCCATGTGGCTCACG TCTGGACAAGCCAATCATCCCAATTGGACTCTGTCGCCTCCTTGGGTCCCCAAAGCAGGGGCCGGATCGCAGAGC TCCCCGTGGGCGGCGCCCTTTCTCATCCCCGTCATATGTCTGCTCGGCCTCTACGCCATCTCTTTGACAGGCTAC CTGGTCTATCGCCGTCGGAAAAAGGCCAGGATGGAGAGGGCCATGGCGAATTCCAACGCCATTCGCGGTCGCAGC TTCTCCGTCACTTCGCCCATCACGGCGCATGTTCTCGCTGGACCCGAGACCGGCATCGAGAAGAGCGGCGTCGTC GGCATGGTCAACGCTAGCCCGATCATCAGTAGAGACAGCCGTCTCAGCTCGTCCGGAATCCGTCGCTCAAGGACA GCTCAACCCGACGATGATGATGATGATGACGACGACGACGACGACGACGACGACAGGCTCCGGCTTCCCCGGCAC CCAAGAGGTCGCGGAATCCGCATCGTCACCACCGGTGGCCCGAGCTCTGAAGCCGAGGAAAGGCTTTTGATGACG CCCGTCCATAGCGCCGGATCAACAACGTCCAGCGCGCAACAAACTCCCGTCGGCCGCAACTTTTCCCGGCCTGTA CAAACACAAAGAAGCTTTGCATAA |
Gene | >Ophio5|2220 ATGGCCGTTCATCCAACAGACGCCGCCGCTCAGGGCATGGCCATCCACGGCCTTCGCTTCATCAACGATGAGTGG AACGACAGCATCTCTAACGGCGACGTCTTCACCGTCCGATGGAACCAGTCTCTGTCCAAAGTCGGCTCCGGCCTG GGTGTGTTCCAAGTAACGTATCCGAAGGACGGCGTCGTCGTCTACGAGCTGGTATCGAATCTAACTGGTCTGTAG CCCGCCGTGCTGCTTTTGTACCCTTCACCTCACTGACCGAGTGACGTGATAGATGCCATCGAGGGCGACGGCGCC TCGTGTAAATGGACGCCGCAGAATCTGGACAAGAAGGGCCTCTATGCCATGTGGCTCACGTCTGGACAAGCCAAT CATCCCAATTGGACTCTGTCGCCTCCTTGGGTCCCCAAAGCAGGGGTTGGTTCCCCTTCCCCGTCTCCCCTCGTT CTGAGTGTCCGTCTAATCAAGACGTCAATTTCAAGGCCGGATCGCAGAGCTCCCCGTGGGCGGCGCCCTTTCTCA TCCCCGTCATATGTCTGCTCGGCCTCTACGCCATCTCTTTGACAGGCTACCTGGTCTATCGCCGTCGGAAAAAGG CCAGGATGGAGAGGGCCATGGCGAATTCCAACGCCATTCGCGGTCGCAGCTTCTCCGTCACTTCGCCCATCACGG CGCATGTTCTCGCTGGACCCGAGACCGGCATCGAGAAGAGCGGCGTCGTCGGCATGGTCAACGCTAGCCCGATCA TCAGTAGAGACAGCCGTCTCAGCTCGTCCGGAATCCGTCGCTCAAGGACAGCTCAACCCGACGATGATGATGATG ATGACGACGACGACGACGACGACGACGACAGGCTCCGGCTTCCCCGGCACCCAAGAGGTCGCGGAATCCGCATCG TCACCACCGGTGGCCCGAGCTCTGAAGCCGAGGAAAGGCTTTTGATGACGCCCGTCCATAGCGCCGGATCAACAA CGTCCAGCGCGCAACAAACTCCCGTCGGCCGCAACTTTTCCCGGCCTGTACAAACACAAAGAAGCTTTGCATAA |