© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Ophio5|2208 |
| Gene name | |
| Location | scaffold_190:23915..24595 |
| Strand | - |
| Gene length (bp) | 680 |
| Transcript length (bp) | 600 |
| Coding sequence length (bp) | 597 |
| Protein length (aa) | 199 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF13639 | zf-RING_2 | Ring finger domain | 1.1E-08 | 123 | 170 |
| PF12861 | zf-ANAPC11 | Anaphase-promoting complex subunit 11 RING-H2 finger | 5.1E-05 | 118 | 172 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|P38239|YBR2_YEAST | Uncharacterized RING finger protein YBR062C OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=YBR062C PE=1 SV=2 | 102 | 173 | 1.0E-15 |
| sp|O43164|PJA2_HUMAN | E3 ubiquitin-protein ligase Praja-2 OS=Homo sapiens GN=PJA2 PE=1 SV=4 | 82 | 189 | 4.0E-07 |
| sp|A5WWA0|ZNRF3_DANRE | E3 ubiquitin-protein ligase ZNRF3 OS=Danio rerio GN=znrf3 PE=1 SV=2 | 125 | 181 | 4.0E-07 |
| sp|Q5R4R1|PJA2_PONAB | E3 ubiquitin-protein ligase Praja-2 OS=Pongo abelii GN=PJA2 PE=2 SV=1 | 82 | 189 | 4.0E-07 |
| sp|Q80U04|PJA2_MOUSE | E3 ubiquitin-protein ligase Praja-2 OS=Mus musculus GN=Pja2 PE=1 SV=2 | 82 | 170 | 1.0E-06 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|P38239|YBR2_YEAST | Uncharacterized RING finger protein YBR062C OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=YBR062C PE=1 SV=2 | 102 | 173 | 1.0E-15 |
| sp|O43164|PJA2_HUMAN | E3 ubiquitin-protein ligase Praja-2 OS=Homo sapiens GN=PJA2 PE=1 SV=4 | 82 | 189 | 4.0E-07 |
| sp|A5WWA0|ZNRF3_DANRE | E3 ubiquitin-protein ligase ZNRF3 OS=Danio rerio GN=znrf3 PE=1 SV=2 | 125 | 181 | 4.0E-07 |
| sp|Q5R4R1|PJA2_PONAB | E3 ubiquitin-protein ligase Praja-2 OS=Pongo abelii GN=PJA2 PE=2 SV=1 | 82 | 189 | 4.0E-07 |
| sp|Q80U04|PJA2_MOUSE | E3 ubiquitin-protein ligase Praja-2 OS=Mus musculus GN=Pja2 PE=1 SV=2 | 82 | 170 | 1.0E-06 |
| sp|Q63364|PJA2_RAT | E3 ubiquitin-protein ligase Praja-2 OS=Rattus norvegicus GN=Pja2 PE=2 SV=1 | 82 | 170 | 2.0E-06 |
| sp|O55176|PJA1_MOUSE | E3 ubiquitin-protein ligase Praja-1 OS=Mus musculus GN=Pja1 PE=1 SV=3 | 82 | 170 | 2.0E-06 |
| sp|Q5SSZ7|ZNRF3_MOUSE | E3 ubiquitin-protein ligase ZNRF3 OS=Mus musculus GN=Znrf3 PE=1 SV=1 | 102 | 185 | 3.0E-06 |
| sp|Q84TF5|RHA4A_ARATH | RING-H2 zinc finger protein RHA4a OS=Arabidopsis thaliana GN=RHA4A PE=2 SV=1 | 120 | 195 | 3.0E-06 |
| sp|Q8NG27|PJA1_HUMAN | E3 ubiquitin-protein ligase Praja-1 OS=Homo sapiens GN=PJA1 PE=1 SV=2 | 82 | 170 | 3.0E-06 |
| sp|Q9CY62|RN181_MOUSE | E3 ubiquitin-protein ligase RNF181 OS=Mus musculus GN=Rnf181 PE=1 SV=1 | 101 | 173 | 4.0E-06 |
| sp|Q4KLR8|ZNRF3_XENLA | E3 ubiquitin-protein ligase ZNRF3 OS=Xenopus laevis GN=znrf3 PE=2 SV=1 | 110 | 177 | 5.0E-06 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0031145 | anaphase-promoting complex-dependent catabolic process | Yes |
| GO:0005680 | anaphase-promoting complex | Yes |
| GO:0008270 | zinc ion binding | Yes |
| GO:0061630 | ubiquitin protein ligase activity | Yes |
| GO:0097602 | cullin family protein binding | Yes |
| GO:0046872 | metal ion binding | No |
| GO:0044260 | cellular macromolecule metabolic process | No |
| GO:1990234 | transferase complex | No |
| GO:0003674 | molecular_function | No |
| GO:0044237 | cellular metabolic process | No |
| GO:0043169 | cation binding | No |
| GO:0043167 | ion binding | No |
| GO:0008152 | metabolic process | No |
| GO:0019941 | modification-dependent protein catabolic process | No |
| GO:1902494 | catalytic complex | No |
| GO:0031461 | cullin-RING ubiquitin ligase complex | No |
| GO:0030163 | protein catabolic process | No |
| GO:0004842 | ubiquitin-protein transferase activity | No |
| GO:0044238 | primary metabolic process | No |
| GO:0006508 | proteolysis | No |
| GO:0005515 | protein binding | No |
| GO:0043161 | proteasome-mediated ubiquitin-dependent protein catabolic process | No |
| GO:0032991 | protein-containing complex | No |
| GO:0000151 | ubiquitin ligase complex | No |
| GO:1901564 | organonitrogen compound metabolic process | No |
| GO:0008150 | biological_process | No |
| GO:0043170 | macromolecule metabolic process | No |
| GO:0051603 | proteolysis involved in protein catabolic process | No |
| GO:0140513 | nuclear protein-containing complex | No |
| GO:0043632 | modification-dependent macromolecule catabolic process | No |
| GO:0003824 | catalytic activity | No |
| GO:0006807 | nitrogen compound metabolic process | No |
| GO:1901575 | organic substance catabolic process | No |
| GO:0009057 | macromolecule catabolic process | No |
| GO:0000152 | nuclear ubiquitin ligase complex | No |
| GO:0044248 | cellular catabolic process | No |
| GO:0019787 | ubiquitin-like protein transferase activity | No |
| GO:0006511 | ubiquitin-dependent protein catabolic process | No |
| GO:0046914 | transition metal ion binding | No |
| GO:1901565 | organonitrogen compound catabolic process | No |
| GO:0016740 | transferase activity | No |
| GO:0005575 | cellular_component | No |
| GO:0019538 | protein metabolic process | No |
| GO:0009056 | catabolic process | No |
| GO:0140535 | intracellular protein-containing complex | No |
| GO:0010498 | proteasomal protein catabolic process | No |
| GO:0009987 | cellular process | No |
| GO:0005488 | binding | No |
| GO:0140096 | catalytic activity, acting on a protein | No |
| GO:0071704 | organic substance metabolic process | No |
| GO:0061659 | ubiquitin-like protein ligase activity | No |
| GO:0044265 | cellular macromolecule catabolic process | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 43 | 0.45 |
Expression values
| Label | Description | Expression (RPKM) | Confidence interval (low) | Confidence interval (high) |
|---|---|---|---|---|
| SC16a | Pure fungal culture | 57.61 | 26.25 | 88.96 |
| CcL | In ants, during behavior modification | 61.03 | 27.84 | 94.21 |
| CcD | In ants, recently dead | 42.35 | 17.68 | 67.01 |
Differential expression
| Label1 | Label2 | Q-value | Significant difference |
|---|---|---|---|
| SC16a | CcL | 0.864213 | no |
| SC16a | CcD | 0.283284 | no |
| CcL | CcD | 0.190650 | no |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Ophio5|2208 MATQYEVEHNVELSAPRRSSRRVDMTSFFSLINSMDSPPGGSRTNPHATPTPFDAAALFRLLRDQLRSLHNTAPT DGNRNFLEQLMVSLEDDIHDPPAQLPGASQQFVDALDRVARKRLARDDDCAICKVPYLDDEWCLVVELPCAGRHR FDLECVAPWLRSKGTCPMCRERVGDAKSKQPVVPVTEDDDEDDTDMMYA |
| Coding | >Ophio5|2208 ATGGCCACACAGTACGAAGTCGAGCACAACGTTGAGCTCTCGGCGCCTCGGCGATCATCGCGCCGTGTCGATATG ACTTCCTTCTTCTCGCTCATCAACTCGATGGACTCGCCTCCAGGCGGCTCCCGTACGAACCCGCACGCCACGCCC ACTCCATTCGACGCCGCCGCCCTCTTCCGCCTGCTGCGCGACCAGCTGCGCTCTCTGCATAACACGGCGCCCACA GACGGCAACCGTAATTTTCTCGAGCAGCTCATGGTCTCGCTCGAAGACGACATTCACGATCCGCCCGCTCAGCTG CCCGGTGCTTCCCAGCAGTTTGTCGATGCTCTCGACCGCGTGGCTCGCAAGCGTCTGGCTCGCGACGACGATTGC GCCATATGCAAGGTCCCGTATCTTGATGACGAATGGTGTCTTGTCGTTGAGCTGCCGTGCGCTGGCCGTCATCGC TTCGACCTTGAGTGCGTCGCCCCTTGGCTGCGCAGCAAGGGCACTTGTCCCATGTGTCGTGAGCGCGTGGGCGAC GCCAAGAGCAAGCAGCCGGTTGTACCTGTCACCGAAGACGACGATGAAGATGATACGGATATGATGTACGCC |
| Transcript | >Ophio5|2208 ATGGCCACACAGTACGAAGTCGAGCACAACGTTGAGCTCTCGGCGCCTCGGCGATCATCGCGCCGTGTCGATATG ACTTCCTTCTTCTCGCTCATCAACTCGATGGACTCGCCTCCAGGCGGCTCCCGTACGAACCCGCACGCCACGCCC ACTCCATTCGACGCCGCCGCCCTCTTCCGCCTGCTGCGCGACCAGCTGCGCTCTCTGCATAACACGGCGCCCACA GACGGCAACCGTAATTTTCTCGAGCAGCTCATGGTCTCGCTCGAAGACGACATTCACGATCCGCCCGCTCAGCTG CCCGGTGCTTCCCAGCAGTTTGTCGATGCTCTCGACCGCGTGGCTCGCAAGCGTCTGGCTCGCGACGACGATTGC GCCATATGCAAGGTCCCGTATCTTGATGACGAATGGTGTCTTGTCGTTGAGCTGCCGTGCGCTGGCCGTCATCGC TTCGACCTTGAGTGCGTCGCCCCTTGGCTGCGCAGCAAGGGCACTTGTCCCATGTGTCGTGAGCGCGTGGGCGAC GCCAAGAGCAAGCAGCCGGTTGTACCTGTCACCGAAGACGACGATGAAGATGATACGGATATGATGTACGCCTGA |
| Gene | >Ophio5|2208 ATGGCCACACAGTACGAAGGTAGCCTACCTACTCACCTAACTACCAAACCAACCTAAACCGATTCCCTCCATCCA TGGCGACGCTGACAAGACGCAAAGTCGAGCACAACGTTGAGCTCTCGGCGCCTCGGCGATCATCGCGCCGTGTCG ATATGACTTCCTTCTTCTCGCTCATCAACTCGATGGACTCGCCTCCAGGCGGCTCCCGTACGAACCCGCACGCCA CGCCCACTCCATTCGACGCCGCCGCCCTCTTCCGCCTGCTGCGCGACCAGCTGCGCTCTCTGCATAACACGGCGC CCACAGACGGCAACCGTAATTTTCTCGAGCAGCTCATGGTCTCGCTCGAAGACGACATTCACGATCCGCCCGCTC AGCTGCCCGGTGCTTCCCAGCAGTTTGTCGATGCTCTCGACCGCGTGGCTCGCAAGCGTCTGGCTCGCGACGACG ATTGCGCCATATGCAAGGTCCCGTATCTTGATGACGAATGGTGTCTTGTCGTTGAGCTGCCGTGCGCTGGCCGTC ATCGCTTCGACCTTGAGTGCGTCGCCCCTTGGCTGCGCAGCAAGGGCACTTGTCCCATGTGTCGTGAGCGCGTGG GCGACGCCAAGAGCAAGCAGCCGGTTGTACCTGTCACCGAAGACGACGATGAAGATGATACGGATATGATGTACG CCTGA |