Fungal Genomics

at Utrecht University

General Properties

Protein IDOphio5|216
Gene name
Locationscaffold_104:17494..17800
Strand-
Gene length (bp)306
Transcript length (bp)207
Coding sequence length (bp)204
Protein length (aa) 68

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PFAM Domains

PFAM Domain ID Short name Long name E-value Start End
PF02238 COX7a Cytochrome c oxidase subunit VII 6.1E-20 6 60

Swissprot hits

(None)

GO

(None)

SignalP

[Help with interpreting these statistics]
SignalP signal predicted Location
(based on Ymax)
D score
(significance: > 0.45)
No 1 - 39 0.5

Transmembrane Domains

Domain # Start End Length
1 34 56 22

Transcription Factor Class

(None)

Expression data

Analysis 1: Expression analysis during behavioral modification. Published in De Bekker et al., 2017.

Click here for more information

Sequences

Type of sequenceSequence
Locus Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein >Ophio5|216
MIDKKNTVIDHQRFYQHAFQRHTRLWMINPRSRLYMTPYLIMLWGGLGATLYAAGRKVCGYNTWFGEN
Coding >Ophio5|216
ATGATCGACAAGAAGAACACGGTGATCGATCACCAGCGCTTCTATCAGCATGCGTTTCAAAGGCATACTCGCTTG
TGGATGATTAATCCACGATCTCGCCTGTACATGACGCCGTACCTCATCATGCTCTGGGGCGGTTTGGGAGCTACA
CTGTACGCCGCTGGTCGGAAGGTCTGTGGTTACAACACATGGTTCGGGGAGAAT
Transcript >Ophio5|216
ATGATCGACAAGAAGAACACGGTGATCGATCACCAGCGCTTCTATCAGCATGCGTTTCAAAGGCATACTCGCTTG
TGGATGATTAATCCACGATCTCGCCTGTACATGACGCCGTACCTCATCATGCTCTGGGGCGGTTTGGGAGCTACA
CTGTACGCCGCTGGTCGGAAGGTCTGTGGTTACAACACATGGTTCGGGGAGAATTAA
Gene >Ophio5|216
ATGATCGACAAGAAGAACACGGTGATCGATCACCAGCGCTTCTATCAGCATGCGTTTCAAAGGCATACTCGCTTG
TGGATGATTGTACGGCTTCAGATGGGAGCCGCTTGGTTCTGATACTGACAAGGTTTCCAGAATCCACGATCTCGC
CTGTACATGACGCCGTACCTCATCATGCTCTGGGGCGGTTTGGGAGGTATGCATCAAGACCGCAGCCTTCGATTC
GTGTCTGACGAGCTTGCAGCTACACTGTACGCCGCTGGTCGGAAGGTCTGTGGTTACAACACATGGTTCGGGGAG
AATTAA

© 2022 - Robin Ohm - Utrecht University - The Netherlands

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