© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Ophio5|2156 |
| Gene name | |
| Location | scaffold_189:22936..23625 |
| Strand | + |
| Gene length (bp) | 689 |
| Transcript length (bp) | 636 |
| Coding sequence length (bp) | 633 |
| Protein length (aa) | 211 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|Q6DHQ1|HVCN1_DANRE | Voltage-gated hydrogen channel 1 OS=Danio rerio GN=hvcn1 PE=2 SV=1 | 4 | 201 | 8.0E-13 |
| sp|Q5F4C0|HVCN1_CHICK | Voltage-gated hydrogen channel 1 OS=Gallus gallus GN=HVCN1 PE=2 SV=1 | 40 | 178 | 7.0E-08 |
| sp|Q5M7E9|HVCN1_XENLA | Voltage-gated hydrogen channel 1 OS=Xenopus laevis GN=hvcn1 PE=2 SV=1 | 91 | 188 | 5.0E-07 |
| sp|Q5M8L8|HVCN1_XENTR | Voltage-gated hydrogen channel 1 OS=Xenopus tropicalis GN=hvcn1 PE=2 SV=1 | 91 | 191 | 1.0E-06 |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 66 | 0.5 |
| Domain # | Start | End | Length |
|---|---|---|---|
| 1 | 55 | 77 | 22 |
| 2 | 87 | 109 | 22 |
| 3 | 116 | 138 | 22 |
| 4 | 143 | 162 | 19 |
Expression values
| Label | Description | Expression (RPKM) | Confidence interval (low) | Confidence interval (high) |
|---|---|---|---|---|
| SC16a | Pure fungal culture | 17.66 | 5.72 | 29.59 |
| CcL | In ants, during behavior modification | 1.42 | 0.00 | 3.28 |
| CcD | In ants, recently dead | 0.19 | 0.00 | 0.68 |
Differential expression
| Label1 | Label2 | Q-value | Significant difference |
|---|---|---|---|
| SC16a | CcL | 0.002236 | yes |
| SC16a | CcD | 0.269661 | no |
| CcL | CcD | 1.000000 | no |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Ophio5|2156 MTDSDAASAPLLPSHARSYDASSSPPPPSGSGLRARLAHMRAAAARSLSSRRKHFAIMAIVSLDVFALLVEVFIR LIACETGQAREPWVLIMISVLGTIGLVISCLFMVELAACLLVYGFGYLCSWFHLFDAVVIVISFIVDVGLRGVAG SIGSLVVVLRLWRLAKLSEEVVLGASERMDLLEHHLEEVQSENKQLRAQLGLDSVDHSSHA |
| Coding | >Ophio5|2156 ATGACCGACTCCGACGCCGCGTCGGCTCCCCTGCTACCGTCCCATGCCCGCTCTTACGATGCGTCGTCATCTCCG CCGCCGCCTTCGGGGTCCGGCCTGCGCGCCCGCCTTGCCCATATGCGCGCCGCGGCCGCGAGAAGCCTCTCGTCG CGCCGCAAGCACTTTGCCATCATGGCCATTGTCAGCCTCGATGTCTTCGCCCTGCTCGTCGAAGTCTTCATCCGG CTTATCGCGTGCGAGACGGGTCAGGCCCGAGAGCCCTGGGTGCTGATCATGATTTCTGTTCTCGGCACCATCGGC CTTGTCATTAGCTGCCTCTTCATGGTTGAGCTCGCCGCCTGCTTACTCGTCTATGGCTTTGGTTATCTCTGCTCC TGGTTCCACCTTTTTGACGCAGTCGTCATCGTCATCAGCTTCATCGTCGACGTGGGTCTGCGTGGAGTCGCTGGT TCCATAGGCTCCCTCGTCGTCGTCCTTCGACTATGGCGTCTTGCCAAGCTGTCGGAGGAAGTTGTCTTGGGGGCA TCGGAGAGAATGGACTTGTTGGAACACCATCTGGAGGAGGTCCAAAGCGAGAACAAGCAGTTGAGGGCTCAACTA GGACTGGACTCCGTAGACCATTCTAGCCACGCA |
| Transcript | >Ophio5|2156 ATGACCGACTCCGACGCCGCGTCGGCTCCCCTGCTACCGTCCCATGCCCGCTCTTACGATGCGTCGTCATCTCCG CCGCCGCCTTCGGGGTCCGGCCTGCGCGCCCGCCTTGCCCATATGCGCGCCGCGGCCGCGAGAAGCCTCTCGTCG CGCCGCAAGCACTTTGCCATCATGGCCATTGTCAGCCTCGATGTCTTCGCCCTGCTCGTCGAAGTCTTCATCCGG CTTATCGCGTGCGAGACGGGTCAGGCCCGAGAGCCCTGGGTGCTGATCATGATTTCTGTTCTCGGCACCATCGGC CTTGTCATTAGCTGCCTCTTCATGGTTGAGCTCGCCGCCTGCTTACTCGTCTATGGCTTTGGTTATCTCTGCTCC TGGTTCCACCTTTTTGACGCAGTCGTCATCGTCATCAGCTTCATCGTCGACGTGGGTCTGCGTGGAGTCGCTGGT TCCATAGGCTCCCTCGTCGTCGTCCTTCGACTATGGCGTCTTGCCAAGCTGTCGGAGGAAGTTGTCTTGGGGGCA TCGGAGAGAATGGACTTGTTGGAACACCATCTGGAGGAGGTCCAAAGCGAGAACAAGCAGTTGAGGGCTCAACTA GGACTGGACTCCGTAGACCATTCTAGCCACGCATGA |
| Gene | >Ophio5|2156 ATGACCGACTCCGACGCCGCGTCGGCTCCCCTGCTACCGTCCCATGCCCGCTCTTACGATGCGTCGTCATCTCCG CCGCCGCCTTCGGGGTCCGGCCTGCGCGCCCGCCTTGCCCATATGCGCGCCGCGGCCGCGAGAAGCCTCTCGTCG CGCCGCAAGCACTTTGCCATCATGGCCATTGTCAGCCTCGATGTCTTCGCCCTGCTCGTCGAAGTCTTCATCCGG CTTATCGCGTGCGAGACGGGTCAGGCCCGAGAGCCCTGGGTGCTGATCATGATTTCTGTTCTCGGCACCATCGGC CTTGTCATTAGCTGCCTCTTCATGGTTGAGCTCGCCGCCTGCTTACTCGTCTATGGCTTTGGGTAATGGCTTCAT CTCATGCACATCTTCTCGTCCTGCTGACTCGTGGCCCAAGTTATCTCTGCTCCTGGTTCCACCTTTTTGACGCAG TCGTCATCGTCATCAGCTTCATCGTCGACGTGGGTCTGCGTGGAGTCGCTGGTTCCATAGGCTCCCTCGTCGTCG TCCTTCGACTATGGCGTCTTGCCAAGCTGTCGGAGGAAGTTGTCTTGGGGGCATCGGAGAGAATGGACTTGTTGG AACACCATCTGGAGGAGGTCCAAAGCGAGAACAAGCAGTTGAGGGCTCAACTAGGACTGGACTCCGTAGACCATT CTAGCCACGCATGA |