© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Ophio5|215 |
| Gene name | |
| Location | scaffold_104:16406..17229 |
| Strand | + |
| Gene length (bp) | 823 |
| Transcript length (bp) | 717 |
| Coding sequence length (bp) | 714 |
| Protein length (aa) | 238 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF01086 | Clathrin_lg_ch | Clathrin light chain | 5.8E-82 | 5 | 236 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|Q9USP6|CLC1_SCHPO | Clathrin light chain OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=clc1 PE=1 SV=1 | 4 | 237 | 2.0E-44 |
| sp|P17891|CLC1_YEAST | Clathrin light chain OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=CLC1 PE=1 SV=1 | 1 | 235 | 1.0E-23 |
| sp|Q9VWA1|CLC_DROME | Clathrin light chain OS=Drosophila melanogaster GN=Clc PE=2 SV=1 | 24 | 229 | 3.0E-07 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0030132 | clathrin coat of coated pit | Yes |
| GO:0030130 | clathrin coat of trans-Golgi network vesicle | Yes |
| GO:0016192 | vesicle-mediated transport | Yes |
| GO:0005198 | structural molecule activity | Yes |
| GO:0006886 | intracellular protein transport | Yes |
| GO:0032991 | protein-containing complex | No |
| GO:0003674 | molecular_function | No |
| GO:0051179 | localization | No |
| GO:0006810 | transport | No |
| GO:0098797 | plasma membrane protein complex | No |
| GO:0051234 | establishment of localization | No |
| GO:0071705 | nitrogen compound transport | No |
| GO:0033036 | macromolecule localization | No |
| GO:0070727 | cellular macromolecule localization | No |
| GO:0030117 | membrane coat | No |
| GO:0030118 | clathrin coat | No |
| GO:0008150 | biological_process | No |
| GO:0030125 | clathrin vesicle coat | No |
| GO:0045184 | establishment of protein localization | No |
| GO:0009987 | cellular process | No |
| GO:0051641 | cellular localization | No |
| GO:0051649 | establishment of localization in cell | No |
| GO:0008104 | protein localization | No |
| GO:0005575 | cellular_component | No |
| GO:0046907 | intracellular transport | No |
| GO:0071702 | organic substance transport | No |
| GO:0098796 | membrane protein complex | No |
| GO:0030120 | vesicle coat | No |
| GO:0015031 | protein transport | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 66 | 0.45 |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Ophio5|215 MADRFPSLEDFDSGAQTEVQAPTIDAAADDFLAREKAVLGADADQFATVEDDVAFAEPGGDLLGEADAAQSSFES QFPDLTSPSAGVAGGPPGVSTMTGPSVSYNTGYQTHVEDEEEPQVIKEWRERRNEQISKRAEQFAAQREETIKEA QQNIDDFYENYNTKKEKGIAQTRKEAEQFLANQEDTVSGGTSWDRIAKLVDVSGKGIRGGAAGSGKERFREMLTS LRKDEKAPGATGY |
| Coding | >Ophio5|215 ATGGCGGACCGTTTCCCTTCTCTTGAGGATTTCGACTCCGGAGCGCAGACCGAGGTCCAGGCCCCTACGATAGAC GCCGCCGCTGACGACTTTCTCGCCCGCGAAAAAGCTGTACTGGGCGCCGACGCAGATCAGTTCGCGACCGTCGAA GATGACGTCGCATTTGCAGAGCCTGGCGGCGACCTCTTAGGAGAGGCCGACGCTGCCCAATCCTCCTTTGAGTCT CAGTTCCCCGACCTCACCAGCCCTTCAGCCGGTGTCGCTGGCGGTCCACCGGGAGTCAGTACCATGACCGGGCCG TCCGTGAGTTACAACACGGGTTACCAAACCCACGTTGAGGACGAAGAGGAGCCTCAGGTTATCAAGGAGTGGCGG GAACGCCGCAACGAGCAGATCTCCAAGAGAGCGGAGCAATTCGCAGCTCAGCGCGAAGAGACGATCAAGGAGGCT CAACAAAACATTGACGACTTCTACGAAAACTACAACACGAAGAAGGAGAAGGGCATCGCACAGACTCGCAAGGAG GCAGAGCAGTTCCTGGCAAATCAGGAGGACACAGTATCTGGCGGAACAAGCTGGGACCGCATCGCCAAGCTGGTC GATGTCAGCGGCAAAGGGATCAGAGGGGGGGCTGCCGGGTCTGGGAAAGAGCGCTTTCGTGAAATGCTGACTAGC CTGAGGAAAGATGAGAAAGCTCCCGGGGCGACAGGCTAC |
| Transcript | >Ophio5|215 ATGGCGGACCGTTTCCCTTCTCTTGAGGATTTCGACTCCGGAGCGCAGACCGAGGTCCAGGCCCCTACGATAGAC GCCGCCGCTGACGACTTTCTCGCCCGCGAAAAAGCTGTACTGGGCGCCGACGCAGATCAGTTCGCGACCGTCGAA GATGACGTCGCATTTGCAGAGCCTGGCGGCGACCTCTTAGGAGAGGCCGACGCTGCCCAATCCTCCTTTGAGTCT CAGTTCCCCGACCTCACCAGCCCTTCAGCCGGTGTCGCTGGCGGTCCACCGGGAGTCAGTACCATGACCGGGCCG TCCGTGAGTTACAACACGGGTTACCAAACCCACGTTGAGGACGAAGAGGAGCCTCAGGTTATCAAGGAGTGGCGG GAACGCCGCAACGAGCAGATCTCCAAGAGAGCGGAGCAATTCGCAGCTCAGCGCGAAGAGACGATCAAGGAGGCT CAACAAAACATTGACGACTTCTACGAAAACTACAACACGAAGAAGGAGAAGGGCATCGCACAGACTCGCAAGGAG GCAGAGCAGTTCCTGGCAAATCAGGAGGACACAGTATCTGGCGGAACAAGCTGGGACCGCATCGCCAAGCTGGTC GATGTCAGCGGCAAAGGGATCAGAGGGGGGGCTGCCGGGTCTGGGAAAGAGCGCTTTCGTGAAATGCTGACTAGC CTGAGGAAAGATGAGAAAGCTCCCGGGGCGACAGGCTACTGA |
| Gene | >Ophio5|215 ATGGCGGACCGTTTCCCTTCTCTTGAGGATTTCGACTCCGGAGGTCAGTAGTCCCCTAAAGACGTCGCATTCAAG CTAACGCGTCCTTCTTGCAGCGCAGACCGAGGTCCAGGCCCCTACGATAGACGCCGCCGCTGACGACTTTCTCGC CCGCGAAAAAGCTGTACTGGGCGCCGACGCAGATCAGTTCGCGACCGTCGAAGATGACGTCGCATTTGCAGAGCC TGGCGGCGACCTCTTAGGAGAGGCCGACGCTGCCCAATCCTCCTTTGAGTCTCAGTTCCCCGACCTCACCAGCCC TTCAGCCGTAAGTAACGCGCACGCGCTCGAAACGCTACAGTATTGATGAAGCTTCTGGCAGGGTGTCGCTGGCGG TCCACCGGGAGTCAGTACCATGACCGGGCCGTCCGTGAGTTACAACACGGGTTACCAAACCCACGTTGAGGACGA AGAGGAGCCTCAGGTTATCAAGGAGTGGCGGGAACGCCGCAACGAGCAGATCTCCAAGAGAGCGGAGCAATTCGC AGCTCAGCGCGAAGAGACGATCAAGGAGGCTCAACAAAACATTGACGACTTCTACGAAAACTACAACACGAAGAA GGAGAAGGGCATCGCACAGACTCGCAAGGAGGCAGAGCAGTTCCTGGCAAATCAGGAGGACACAGTATCTGGCGG AACAAGCTGGGACCGCATCGCCAAGCTGGTCGATGTCAGCGGCAAAGGGATCAGAGGGGGGGCTGCCGGGTCTGG GAAAGAGCGCTTTCGTGAAATGCTGACTAGCCTGAGGAAAGATGAGAAAGCTCCCGGGGCGACAGGCTACTGA |