© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Ophio5|2117 |
| Gene name | |
| Location | scaffold_186:27860..28239 |
| Strand | + |
| Gene length (bp) | 379 |
| Transcript length (bp) | 312 |
| Coding sequence length (bp) | 309 |
| Protein length (aa) | 103 |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| Yes | 1 - 18 | 0.45 |
Expression values
| Label | Description | Expression (RPKM) | Confidence interval (low) | Confidence interval (high) |
|---|---|---|---|---|
| SC16a | Pure fungal culture | 9.92 | 0.31 | 19.53 |
| CcL | In ants, during behavior modification | 44.83 | 9.09 | 80.58 |
| CcD | In ants, recently dead | 37.53 | 9.85 | 65.20 |
Differential expression
| Label1 | Label2 | Q-value | Significant difference |
|---|---|---|---|
| SC16a | CcL | 0.002047 | yes |
| SC16a | CcD | 0.004810 | yes |
| CcL | CcD | 0.681586 | no |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Ophio5|2117 MKFASAFALTLATVAVAHHQSGDGPGLTARDNVLVRRKECSGTRSAEDKCSGKRAKPQNSFHNCKNTDGKCCAKN KDGSGGLDVSRGQGRDDCGYCFTGKCKA |
| Coding | >Ophio5|2117 ATGAAGTTCGCATCTGCCTTTGCCCTGACGCTGGCGACCGTGGCCGTCGCTCATCATCAGTCCGGCGACGGGCCG GGGCTCACGGCGCGGGATAACGTGCTGGTGCGCCGCAAGGAGTGTAGCGGAACGAGGAGCGCCGAAGATAAATGC AGCGGCAAGCGGGCTAAACCTCAAAATTCGTTCCATAACTGTAAGAACACTGATGGAAAATGCTGCGCGAAGAAC AAGGATGGAAGTGGTGGGCTGGATGTCAGTCGGGGTCAAGGTCGGGACGATTGTGGCTATTGCTTCACGGGGAAG TGCAAGGCT |
| Transcript | >Ophio5|2117 ATGAAGTTCGCATCTGCCTTTGCCCTGACGCTGGCGACCGTGGCCGTCGCTCATCATCAGTCCGGCGACGGGCCG GGGCTCACGGCGCGGGATAACGTGCTGGTGCGCCGCAAGGAGTGTAGCGGAACGAGGAGCGCCGAAGATAAATGC AGCGGCAAGCGGGCTAAACCTCAAAATTCGTTCCATAACTGTAAGAACACTGATGGAAAATGCTGCGCGAAGAAC AAGGATGGAAGTGGTGGGCTGGATGTCAGTCGGGGTCAAGGTCGGGACGATTGTGGCTATTGCTTCACGGGGAAG TGCAAGGCTTGA |
| Gene | >Ophio5|2117 ATGAAGTTCGCATCTGCCTTTGCCCTGACGCTGGCGACCGTGGCCGTCGCTCATCATCAGTCCGGCGACGGGCCG GGGCTCACGGCGCGGGATAACGTGCTGGTGCGCCGCAAGGAGTGTAGCGGAACGAGGAGCGCCGAAGATAAATGC AGCGGCAAGCGGGCTAAACCTCAAAATTCGTTCCATAACTGGTAAGCTTGCCGATAATTCCTCCCGTCATCGACG AATCACCCGCTCAACTCTCATCACTCGCCGCAGTAAGAACACTGATGGAAAATGCTGCGCGAAGAACAAGGATGG AAGTGGTGGGCTGGATGTCAGTCGGGGTCAAGGTCGGGACGATTGTGGCTATTGCTTCACGGGGAAGTGCAAGGC TTGA |